Phylogenetic Inference

10/26/98


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Table of Contents

Phylogenetic Inference

Our Goals

Watch Out

Phylogenetic Models

Steps in Analysis

Choice of Input Data

rRNA Genes

Multiple Alignment Method

Typical Alignment Method

Substitution Models

Tree-Building Methods

Distance Methods

Which Distance Method?

Character Methods

Searching for Trees

Tree Search Algorithms

Evaluating Trees

Rooting Trees

Tree Congruence

Common Software

Phylogenetic Stories

Phylogenetic Resources

Practicalities

Trees

Author: cstaben

Email: staben@pop.uky.edu

Home Page: www.uky.edu/Classes/BIO520/BIO520WWW/

Other information:
Lab 7, parts 7 and 9 cannot be done due to a holdup on the PHD Server. Wednesday class postponed.

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