DNA Sequence Manipulations

9/1/98


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Table of Contents

DNA Sequence Manipulations

Editing-Basics

Text-Cautions

DNA Sequence Files

Common formats

Genbank

GB2

GB3

GB4

GB5

GB6

GB7

GB8

GB9

GB10

ASN1

FASTA

Multiple Sequence Files

Sequence Manager

Sequence Manager Limitations

File conversions

Entrez

What’s Missing in DNA sequence files?

“Real” DNA editing

Plasmid Constructions

Plasmids-challenges

Paradigm

Simple manipulations

Sequence Searches

Pattern Matches

How do you search?

WordSearch

Ktup=2

Ktup=3

ktuple

Standard Searches

Restriction Sites MAP

Repeats

Consensus sites

User-defined sites

Known Sites

Your own sites

 Author: cstaben

Email: staben@pop.uky.edu

Home Page: www.uky.edu/Classes/BIO520/BIO520WWW/

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