LOCUS Vair.necat 7872 bp RNA RNA 02-JUL-1998 DEFINITION Vairimorpha necatrix (microsporidian). REFERENCE 1 AUTHORS Vossbrinck,C.R., Maddox,J.V., Friedman,S., Debrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) COMMENT Corresponding GenBank entry: M24612|g162548 common_name= microsporidian NB: 'G' offset at 300r E.coli intentional BASE COUNT 401 a 172 c 293 g 378 u 6628 others ORIGIN 1 .........C ACCAGGU-UG A--U-UC-UG CC-UG-AC-G UA--GACGCU -AUU-CCC-U 61 AA-GAUUAA- -CCCAUGC-A UGU----UU- -----UU--- -------GAU AUGG------ 121 ---------- ---------- ---------- ---------- ---------- ---AA----- 181 A-A-----AU GGA-CUGC-U -C-AGUA-AU -ACUC-ACUU -UA-UUUAA- -UGUA-U--- 241 -UAAAUUA-- ---------- ---------- ---------- ---GU-AUAA C-U-GCGU-- 301 UA-AA--GUG UAGCAUA-AG --AC---AU- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------A -UAC-AGU-A AGAGU-GAGA 1141 --CCU-AUC- AG-CU--AG- -UUGUUA-AG -GUAA-UGG- CUU----AAC A-AGGC-AA- 1201 UGA-CGGG-U -AACGGUAUU A-CUUUGUAA -UAUU-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACUAAG- 1741 UC-UAAGGAU -UGCA-GCA- GGG-GC--GA A-ACUU-GAC C-UA-UGGAU ----UUU--- 1801 -A-UCUGA-G GCA-G--UUA UGG------- -----GAAGU ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- -------AAU AUUCU----- 1981 --AUUGU-UU CAUA-UUGUA AAAGUAUAUG -------AG- G-UG-AUUAA UUGGAG-GG- 2041 -CAA-A-U-C -AAGU-G-CC A-GC-A-GCC -GCGG-UAA- UACUUGU-U- CCAAG-AG-U 2101 GUG-UAUG-- AUGAUUGA-U --GCAGUU-- ----AAAAAG UCCGUAGUUU ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --AUAUUUAA G--------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ------AAGC A-AUAU---- ---------G 3421 AGGUGU-AC- UG--UA-U-A GUUG-G-G-A G-A-GAG-AU GAAA-UGU-G ACGACCCU-G 3481 AC-U-GG-AC GAAC-AGAAG C-GAAA--GC U---GUAC-A C-UUG----- ---UAUGUAU 3541 U-U--UU-UG A-AC-AA-GG A-CGUAA--G CUGGAG-GAG -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- UGUAGUUCC- A--GC-AG-U -AAACUAU-G -CCGACG-A- UGU------- 3661 ---------- ----GAUAUG A--------- -U-------- ---------- --AUUA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---A----UU --G-UAUU-- ---------- --------AG A-UGA----- 3901 ---------- UAGAAA-UU- U----GAG-U UUU-UUGG-C -UCU-GGGGA -UAG-UAUGA 3961 U-C-GCAA-G AU-UGAA-AA UU-AAA---- --GAAA-UUG -ACGGAA-GA A-UA--CCA- 4021 GA-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAU-U-- GU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CG -CGA-G---G UAACUUA-CC -AAUAU---- ---------- ---------- 4561 ---------- ---------- ---------- -UU------U AUUC--AGAG A-----AGA- 4621 UU----UUC- ----GAUCU- ---GA---GA AUGAUAA-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UU- UCA--AUGGA -U-GCU-GUG A-AGUU--UU --GA-UUAAU U--UCACC-A 5161 AG-ACG-U-G AGACC-CU-U U--------- ---------- ---------- -----UA--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUA A------UA- 5521 ---------- ---------- ---------- ---------- -GA---CAG- --AC-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AAUCA-GU-G U---AGGAAG -GAAAGGAU- UAAAACAGG- UCCG-UU-AU 5701 GCCC-UC--- -AG-ACA-UU U-UGGG-CUG -CACGCGCAA UA-CAAU-A- ---------- 5761 ---------G AUAUAUAA-- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---U-C-UU- 5941 UAU-GGGAU- AAU---AU-U U-UGUAAG-- --AGAUAUU- UG-AA-C-UU GGA-AUUGC- 6001 U-AGUA-A-A U-UUU-AU-U AAAUAA--GU A-GAAU-U-G -AAUGUGU-C CC-UGUUCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- U-C-UAAGA- U---GAUA-U G-UG-U-UG- 6121 UGAAAU---- ---------- --UAG-U--- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ----GAAA-- ---------- ---------- 6241 ---------- ---------- ---------A C-UA------ -------C-U UGAA-CAA-U 6301 A-U-GU-AUU AG-AUCU--- GAU-AUAAG- UCGUAA--C- AUGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UGCU-GUU- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -AGAA-CCA- UUAGCAG-GA UCAUAA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Ecyz.bien2 7872 bp RNA RNA 02-JUL-1998 DEFINITION Enterocytozoon bieneusi str. M6 (microsporidian). REFERENCE 1 AUTHORS Hariskeerl,R.A., Schuitema,A.R.J, Van Gool,T. and Terpstra,W.J. TITLE Genetic evidence for the occurrence of extra-intestinal Enterocytozoon bieneusi infections JOURNAL Nucleic Acids Res. 21, 4150-4150 (1993) COMMENT Former RDP Sids: Encz.bien2 Corresponding GenBank entry: L16868|g348111 biol_source= maxillary sinus mucosa infection common_name= microsporidian isolate_name= M6 NB: former name Encephalitozoon bieneusi BASE COUNT 361 a 247 c 375 g 311 u 6578 others ORIGIN 1 .........C ACCAGGU-UG A--U-UC-UG CC-UG-AC-G UA--GAUGCU -AGU-CUC-U 61 GA-GAUUAA- -GCCAUGC-A UGUC-A-GU- ---------- -------GAA GCCUUA---- 121 ---------- ----CGGUGG A--------- ---------- ---------- ---------- 181 A-C----GGC GAA-CGGC-U -C-AGUA-AU -GUUG-CGGU -AA-UUUGG- -UCUC-UG-- 241 UGU------- ---------- ---------- --------GU -A-AA-CUAA C-C-ACGG-- 301 UA-AC--CUG UGGC-UA-A- --AAGC---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------G -GAG-AAU-A AGGCG-CAAC 1141 --CCU-AUC- AG-CU--UG- -UUGGUA-GU -GUAA-AGG- ACU----ACC A-AGGC-CA- 1201 UGA-CGGG-U -AACGGGAAA U-CAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UGG C-UCCCACG- 1741 UC-CAAGGAC -GGCA-GCA- GGC-GC--GA A-ACUU-GUC C-AC-UCCU- ----UACG-- 1801 ---GGGGA-G ACA-G--UCA UGA------- -----GAC-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- -------GUG AGUAUAAG-- 1981 ------A-CC UGAG-UGUAA AGAC------ ----CUUAGG GUGA-AGCAA UUGGAG-GG- 2041 -CAA-GCU-U -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- CUCCAAC-U- CCAAG-AG-U 2101 GUC-UAUG-- GUGGAUGC-U --GCAGUU-- ----AAAGGG UCCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --UGAAUGCA AUUAAAUGUC G-UUGUUC-A AUA-G-CG-A -UG------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---AGUUUGC U---A-AUGU UUGC--GGAA C-GGAU---- ---------A 3421 GGGAGU-GU- AG--UA-U-A GACU-G-G-C G-A-AGA-AU GAAA-UCU-C AAGACCCA-G 3481 UU-U-GG-AC UAAC-GGAGG C-GAAG--GC G---ACAC-U C-UUA----- ---GACGUAU 3541 C-U--UA-GG A-UC-AA-GG A-CGAAG--G CAGGAG-UAU -CGAA-AGUG --AUUA-G-A 3601 CAC-C-GC-- UGUAGUUCC- U--GC-AG-U -AAACUAU-G -CCGACA--- GCC------- 3661 ---------- ----UGUGUG U--------- ---------- ---------- --GAGA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --------AU --A-CGUG-- ---------- --------GG C-GG------ 3901 ---------- GAGAAA-UC- U----UAG-U GUU-CGGG-C -UCU-GGGGA -UAG-UACGC 3961 U-C-GCAA-G GG-UGAA-AC UU-AAAGC-- --GAAA-UUG -ACGGAA-GG A-CA--CUA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAU-U-- GU-GCUG-C- UU-AA-UUUA 4501 -ACUCAA-CG -CGG-G---A AAACUUA-CC -AGGGU---- ---------- ---------- 4561 ---------- ---------- ---------- -C--A-AG-U CAUUC--GUU GAU------- 4621 CG----AAUA ----CG---- --UGA--GAA UGGC-AG-GA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UG- GAA--AUUGA -U-GGG-GCG A-CCUUU-AG --CU-UAAAU G--CUUA--A 5161 AC-CAG-U-G AGACC-UC-C UU-------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ---------- ---------- ---------- -GA---CAG- G-UG-UU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -CUGU-AA-C A-C-AGGAGG -GUGGAGGC- UAUAACAGG- UCCG-UG-AU 5701 GCCC-UU--- -AG-AUA-UC C-UGGG-CAG -CAAGCGCAA UA-CAAU-AU -CUC-----U 5761 ----U-CA-- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 -G--UAGA-- C--------- ------AAAG --UG-A---U -UU----GA- GA-U-G-AG- 5941 U---AGGAU- CUA---CG-U U-UGUAAA-- --UACGUAG- UG-AA-U-AA GGA-AUUCC- 6001 U-AGUA-A-C G-GUG-CC-U CAUCAA--GG C-AUGG-U-G -AAUGUGU-C CC-UGUUCUU 6061 UGUA-CACAC C--GC-CCGU C-A-C-U-A- U-U-UCAGA- U---GGUC-A U-AG-G-GA- 6121 UGAAGA---- ---------- --GC------ ---------- ---------- ---------- 6181 ---------- ---------- ---------- ----UUCG-- ---------- ---------- 6241 ---------- ---------- ---------- --GC------ -------U-C UGAA-UAU-C 6301 U-A-UG-GCU AG-AUAA--- AGU-ACAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCA-GUU- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -AGAA-CCA- UUAGCAG-GA UCAUAA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Amsp.cali2 7872 bp RNA RNA 02-JUL-1998 DEFINITION Amblyospora californica (microsporidian). REFERENCE 1 AUTHORS Baker,M.D., Vossbrinck,C.R., Becnel,J.J. and Maddox,J.V. TITLE Molecular Phylogenetic Position of Amblyospora Hazard & Oldacre (Microspora: Amblyosporidae) and its implication for the evolution of the Microsporidia JOURNAL Unpublished (1997) COMMENT Corresponding GenBank entry: U68473 common_name= microsporidian BASE COUNT 351 a 261 c 393 g 333 u 6534 others ORIGIN 1 .........C ACCAGGU-UG A--U-UC-UG CC-UG-AC-U GU--GACGCU -AGC-CUC-G 61 GG-GAUUAA- -GCCAUGC-A AGU-CUGUG- -AAG-UUUC- -------GU- UAU------- 121 ---------- ---------- ---------- ---------- ---------- G-AAA----- 181 C-A-----GU GAA-CGGC-U -C-AGUA-AA -ACAC-GUCU -A--UCUAC- -CCAC-UU-- 241 GUCUAAUAUA A--------- ---------- ---------- ---------- C-C-CCGG-- 301 GA-AA--CUG UGG------- -------CUA A--------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ------UAUU -GUG-GAU-G AGGGC-GUGA 1141 --CCU-AUC- AG-CU--AG- -UCGGUA-CG -GUAA-AGG- CGU----ACG G-AGGC-GA- 1201 UGA-CGGG-U -AACGGGGAA U-AUGGGUUU -UAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UGG C-UACCAC-- 1741 UC-CAAGGAC -GGCA-G-A- -GC-GC--GA A-ACUU-ACC C-AA-UGA-- ----ACA--- 1801 ----UUGA-G GUA-G--UUA CGG------- -----GGUGU ---------- ---------- 1861 ---------- -GACAUU--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- -------CUA UGA-CC---- 1981 --------GU GUGU-UAAAA GCAG------ ------GGU- --UA-AGACA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAAU UUCCAGC-U- CCAAU-AG-C 2101 GUC-UGUG-- UUUAUUGC-U --GCGGUU-- ----AAAACG UGCGUAGUCU ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --GGUCUAUG GCUUGGGUGU A-AUCCGU-G CUU-U-UC-U -AGUACGGGU 2941 U-AUUUCAGG UACCUAGACC UU-------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---GA-GA-C G-GGGA---- ---------U 3421 GUGGUA-AU- GU--UA-U-U UGGU-A-G-C G-A-GAG-GU GAAA-UUC-G AUGACCUA-C 3481 CA-A-GG-AG CAAC-AGAGG C-GAAA--GC G---AUUA-C C-AGG----- ---AACCGAU 3541 C-U--GA-CG A-UC-AA-GC G-CGUGA--G CAGGAU-UAU -CGAA-GAGG --AUUA-G-A 3601 GAC-C-CA-- CGUA-UUCC- UU-GC-AG-U -AAACGAU-G -CCUACA--- GUG------- 3661 ---------- ----UGGUGC ---------- ---------- ---------- --UUAAUU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------G --C-AUUG-- ---------- --------CG C-GAA----- 3901 ---------- -CGAAA-GC- -----UAG-U GUA-UGGG-C -UCC-GGGGA -UAG-UACGG 3961 A-C-GCAA-G UU-U-AA-AC UU-GAA---- --GAAA-UUG -ACGGAA-GG A-CA--CCA- 4021 CA-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-U-- GU-GCGG-G- UU-AA-UUUG 4501 -ACUCAA-CG -CGG-----A AACCUUA-CC -CGAGC---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G--U-A AUAG-UCCU- ---------- 4621 AAGAUGUAUG UGCAGAGC-- ---A-GAGC- AUUA--C--C ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-CG- UUA--ACACC -U-GGA-GUG A-UCUGU-CU --GA-UUAAA U--UCGGU-A 5161 AC-GUG-U-G AGAGG-UU-G AGCCC--GAU ---------- -GAAC-UA-- -----GC-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---UGCACAA U-----AGC- 5521 ---UA----- ---------- -CAUA----- ---G-UUGGG -GA---CUG- C-AU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -GUGA-GC-A U-G-AGGAAG -UAGCGCCC- GAUAACAGG- UCUG-UG-AU 5701 GCCC-GU--- -AG-AUG-UC C-GGGG-CUC -CACGCGCAC UA-CAAU-GA -GGUGU---- 5761 ----G-G--U U--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------U 5881 AU--CUUA-- GU-G------ ---------- ---U-U---- -UA-AC-AC- CU-C-G-UA- 5941 GUU-GGGAU- UGA---UG-C U-UGUAAC-- --AGUGUCA- UG-AA-C-GU GGA-AUUCC- 6001 U-AGUA-G-U U-GGU-AG-U CACUAA--CG A-CUAA-C-G -AAUGCGU-C CC-UGUUCUU 6061 UGUA-CACAC C--GC-CCGU C-G-U-U-A- U-C-UAAGA- UGG-AAGU-G C-G--G--G- 6121 UGAAGA-CAC -GAUG----- --GCA-G-UA GG-------- -CUAGGG--- ---------- 6181 ---------- ---------- ---------U AACUUAGU-- --CU-AUAGU GUAA------ 6241 ---------- ---------- -AA--A-C-G G-GC---CUU A---GUGG-A AGAA-UCC-G 6301 U-G-CA-CGU AA-AAUU--- GGU....... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Trcm.vagls 7872 bp RNA RNA 02-JUL-1998 DEFINITION Trichomonas vaginalis (trichomonad). REFERENCE 1 AUTHORS Gunderson,J., Hinkle,G., Leipe,D., Morrison,H.G., Stickel,S.K., Odelson,D.A., Breznak,J.A., Nerad,T.A., Muller,M. and Sogin,M.L. TITLE Phylogeny of trichomonads inferred from small-subunit rRNA sequences JOURNAL J. Euk. Microbiol. 42, 411-415 (1995) COMMENT Corresponding GenBank entry: U17510|g687613 common_name= trichomonad BASE COUNT 401 a 331 c 435 g 411 u 6294 others ORIGIN 1 .........U ACUUGGU-UG A--U-CC-UG CC-AA--G-G A-AGCACACU -UAG-GUC-A 61 UA-GAUUAA- -GCCAUGC-A AGU-GUUAGU ---------- -------UCA GG-------- 121 ---------- ----UAACGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UAGC-U -C-AUUA-AU -ACGC-UCAG -AA-UCUAU- -UUGG-CG-- 241 GCGACCAACA GGUCUUA--- ---------- --------AA -U-GG-AUAG C-A-GCAG-- 301 CA-ACU-CUG GUGCUAA-U- --ACAUGCGA UU-------- ---------- ---------- 361 --G-UUUC-- -------UCC A--------- ---------- ---------- -----GAUGU 421 GAAUUA---- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---UGGA--- 541 ---GGA-AA- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------A GUUGA----- -------CC- U----C---- 1021 ---------- ---------A UCA------- ---------- ---------- ---------- 1081 ---------- ---------- --------G- -A-GG-CACG -CCA-UUC-G ACUGA-GUGA 1141 --CCU-AUC- AG-CU--UG- -UACUUA-GG -GUCU-UUA- CCU----AGG U-AGGC-UA- 1201 UCA-CGGG-U -AACGGGCGG U-UACCGUCG -GACUGCCGG A-GAAGG-CG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UAG C-GACUAUA- 1741 UC-CACGGGU -AGCA-GCA- GGC-GC--GA A-ACUU-UCC C-AC-UCGAG ----ACU--- 1801 -U-UCGGA-G GAG-GUAAU- GAC------- -----CAGU- -UCCA----- UUG-GU---- 1861 -GCC------ --UUUU---- -G-G-U---- -A--CU-GU- -GGA------ ---------- 1921 ---------- ---------- ---------- ---------- -------UAG GGGUA----- 1981 ------C-GG UUUU-CCACC G--------- -------UAC CGAA-ACCUA GCAGAG-GG- 2041 -CCA-G-U-C -UGGU-G-CC A-GC-A-GCU -GCGG-UAA- UUCCAGC-U- CUGCG-AG-U 2101 UUGC-UC--- CAUAUUGU-U --GCAGUU-- ----AAAACG C-CGUAGUCU ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAAUU 2221 G-G--C-CA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ------GCAA ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- UG-GU----- ------CGUA CG-------- 2821 ---------- ---------- -UAUU----- ---------- ---------- ---------- 2881 ---UU---UA --CGUUCACU GUG-AACAAA U-CAGGAC-G CUU-A-GA-G -UAUGGCC-- 2941 A-CA------ ---------- ---------- ---------- ---------- -UGAAUGA-C 3001 U-CAGCG-CA G-UAUGAA-G UCU-UU---- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------GUUU UCUUCCGAAA A-CAA-GCUC AAUGA-GAGC C-AUC----- ---------G 3421 GGGGUA-GA- UC--UA-U-C UCAU-G-A-C G-A-GUG-GU GGAA-UAC-U UUGACUC-AU 3481 GA-G-AG-AG AAGCUGA-GG C-GAAG--GC G---UCUA-C C-UAG----- ----AGGGUU 3541 U-C--UGUCG A-UC-AA-GG G-CGAGA--G UAGGAG-UAU -CCAA-CAGG --AUUA-G-A 3601 GAC-C-CU-- GGUAGUUCC- U--AC-CU-U -AAACGAU-G -CCGACA-G- GAG------- 3661 -----UU--- ----UGUCAU U--------- ---------- ---------- --UGUU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --------AA --U-GGCA-- ----GAA--- --------UC U-UUG----- 3901 ---------- GAGAAA-UC- A----UAG-U UCU-UGGG-C -UCU-GGGGG -AAC-UACGA 3961 C-C-GCAA-G GC-UGAA-AC UU-GAA---- --GGAA-UUG -ACGGAA-GG G-CA---CA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GUGG-C- UU-AA-UUUG 4501 -AAUCAA-CA -CGG-G---G AAACUUA-CC -AGGAC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AU-G UUUU-UUAUG ACU-G-ACA- 4621 GG--CUUCGG G---UCUUU- CAGGAUA-U- UGUU-UU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UG- GUG--GUGCG -U-GGG-UUG A-CCUGU-CU AGCG-UUGAU U--CAGCU-A 5161 AC-GAG-C-G AGAUU-AU-C G-CCA--AUU AUUUA-C-UU U-----GCC- -----GA-A- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GUC C-----UUC- 5521 --GGU----U --A--A-A-- ------GU-U C-UA-AUUGG -GA---CUC- C-CU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 --------GA UUUUA-GC-A G-G-UGGAAG -AGGGUAGC- AAUAACAGG- UCCG-UG-AU 5701 GCCCUUU--- -AG-AUG-CU C-UGGG-CUG -CACGCGUGC UA-CAAU-GU -UAGGA-U-C 5761 AA-UA-GG-A CU-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCG ------A-GC 5881 CU--GAGA-- GG-GU----G --CGC--UAC --UC-UUAUA -AU-CC-CU- AA-C-G-UA- 5941 GUU-GGGAU- UGA---CG-U U-UGUAAUC- --AGCGUCA- UG-AA-C-CA GGA-AUC-C- 6001 U-CGUA-A-A U-GUG-UG-U CAACAA--CG C-ACGU-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GGAU-G A-CU-C-GG- 6121 UGAAAU-CAC -CGGA----- --UGC-U--- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ----UACG-- ---------- ---------- 6241 ---------- ---------- ---------A G-CA---GAA A---GUGA-U UAAA-UCA-C 6301 G-U-UA-UCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AACG-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCCGUUG-GA UCAGUU~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Trtr.foet2 7872 bp RNA RNA 02-JUL-1998 DEFINITION Tritrichomonas foetus ATCC 30924 (parasitic protozoan which causes bovine trichomoniasis). REFERENCE 1 AUTHORS Gunderson,J., Hinkle,G., Leipe,D., Morrison,H.G., Stickel,S.K., Odelson,D.A., Breznak,J.A., Nerad,T.A., Muller,M. and Sogin,M.L. TITLE Phylogeny of trichomonads inferred from small-subunit rRNA sequences JOURNAL J. Eukaryot. Microbiol. 42 (4), 411-415 (1995) COMMENT Corresponding GenBank entry: U17509|g687612 common_name= parasitic protozoan which causes bovine trichomoniasis BASE COUNT 410 a 334 c 430 g 395 u 6303 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UG-A AG--CACACU -UCG-GUC-A 61 UA-GAUUAA- -GCCAUGC-A AGU----GU- -----UA-GU U------CAG GC-------- 121 ---------- ---------- ---------- ---------- --------AA C--GAA---- 181 A-C----UGC GAA-CAGC-U -C-AUUA-AC -ACGC-UCAG -AA-UCUAC- -UUGG-UG-- 241 GCGACCUUUC AGGUCUUA-- ---------- --------UU -U-GG-AUAG C-A-GCAG-- 301 UA-AUU-CUG GUGCUAA-U- --ACAUG--- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- --------CG -AUUG----- ---------- --UUUCA--- ---------- 601 ---------- ---------- ---------- ---------- -------CUG AGUUGAGAAA 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CAG------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-GGA A--------- --AA-GUUGA ---------- -------CC- C--------- 1021 ---------- ---------U CC-------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -G-GG-CACA -CCA-AUC-G AUUGA-GCGA 1141 --CCU-AUCA UG-CU--AG- -UACUUA-GG -GUCU-UUA- CCU----AGG U-AGGC-UA- 1201 UCA-CGGG-U -AACGGGCGG U-UACCGUCG -GACUGCCGG A-GAAGG-CG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UAG C-GACUAUA- 1741 UC-CACGGGU -AGCA-GCA- GGC-GC--GA A-ACUU-ACC C-AC-UCGAG ----ACC--- 1801 -U-UCGGA-G GUG-G--UAA UGA------- -----CCAGU -UACAUGU-- ---------- 1861 -CAACC---- -UUUUU---G GU-U-G-UU- --------U- -GUA------ ---------- 1921 ---------- ---------- ---------- ---------- -------UAG GAUUGCACU- 1981 ---------- --UU-UCC-- ---------- ---AGUGCAG UGAA-ACCUA GCAGAG-GG- 2041 -CCA-G-U-C -UGGU-G-CC A-GC-A-GCU -GCGG-UAA- UUCCAGC-U- CUGCG-AG-U 2101 UUG-CUCC-- CAUAUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCA ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAAC- 2221 --U--G---- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- CU----GCAA ------AGG- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---CG----- ----UACG-- ---------- 2821 ---------- ----AAC--- -AUCU----- -GUU------ ---------- ---------- 2881 ---------- --CGUUCACU GUG-AACAAA U-CAGGAC-G CUU-A-GU-G -U-AUGG--- 2941 U-UUUAG--- ---------- ---------- ---------- ---------- --GAAUGA-C 3001 U-UAGCG-CA G-UAUGAU-A UCU-UU---- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- -ACC--UUUG G-UAA--GAU CAAUG-AGAG C-CACC---- ---------G 3421 GGGGUA-GA- UC--UA-U-U UCAU-G-G-C G-A-ACG-GU GGAA-UGU-U UUGACCCA-U 3481 GA-G-AG-AG AAAC-GAAGG C-GAAA--GC G---UCUA-C C-UAG----- ---AGGGUUU 3541 C-U--GU-CG A-UC-AA-GG G-CGAGA--G UAGGAG-UAU -CCAA-CCGG --AUCA-G-A 3601 GAC-C-CG-- GGUAGUUCC- U--AC-CU-U -AAACGAU-G -CCGACA-G- GGG------- 3661 -----C---- ----UUGUCC U--------- -U-------- ---------- --UUAUG--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---A----GG --G-CAGG-- -----A---- --------CC U-UAG----- 3901 ---------- GAGAAA-UC- AU---AGU-U C-U-UGGG-C -UCU-GGGGG -AAC-UACGA 3961 C-C-GCAA-G GC-UGAA-AC UU-GAA---- --GGAA-UUG -ACGGAA-GG G-CA---CA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GUGG-C- UU-AA-UUUG 4501 -AAUCAA-CA -CGG-G---G AAACUUA-CC -AGGAC---- ---------- ---------- 4561 ---------- ---------- ---------- -UA-G-AU-G UU--UUUAAU GAC-UGACA- 4621 GG--CUUCGG G---UCUUUC AGGAUAU--- GACU-UU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UG- GUG--GCGCG -U-GGG-UUG A-CCUGU-CA AGCG-UUGAU U--CAGAU-A 5161 AC-GAG-C-G AGAUU-AU-C G-CCA--AUU AAAUA-C-UC G-----UUU- -----CU-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU A-----CAG- 5521 --AGA----- --U-AG-A-- ------GU-U C-UA-AUUGG -GA---CUC- C-CU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 --------GU AUCAA-GC-A G-G-AGGAAG -AGGGUAGC- AAUAACAGG- UCCG-UG-AU 5701 GUCCUUU--- -AG-AUG-CU C-UGGG-CUG -CACGCGCGC UA-CAAU-GU -UAGGA-U-C 5761 AA-AG-AGAU ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCU GU-------C 5881 CU--GAAA-- AG-G----CU ACAGC-UAC- -UCU-C-GCA -AU-AC-CU- AA-C-G-UA- 5941 GUU-GGGAU- UGA---GG-A U-UGUAAUC- --AUUCUCA- UG-AA-C-CA GGA-AUCCC- 6001 U-UGUA-A-A U-GCG-UG-U CAACAG--CG C-GCGU-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-C-ACCGA- UU--GGAU-G A-CU-C-GG- 6121 UGAAAU-UAU -CGGA----- --CCU----- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ----UGCG-- ---------- ---------- 6241 ---------- ---------- ---------- A-GG---AAA G---GUAA-U UAAA-UCA-C 6301 G-U-UA-UCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AACG-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Hxmt.inflt 7872 bp RNA RNA 02-JUL-1998 DEFINITION Hexamita inflata ATCC 50268 (diplomonad). REFERENCE 1 AUTHORS Leipe,D.D., Gunderson,J.H., Nerad,T.A. and Sogin,M.L. TITLE Small subunit ribosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree JOURNAL Mol. Biochem. Parasitol. 59, 41-48 (1993) COMMENT Corresponding GenBank entry: L07836|g308770 common_name= diplomonad BASE COUNT 392 a 346 c 452 g 362 u 6320 others ORIGIN 1 .........A ACCUGGU-CG A--U-CC-UG CC-AG-RA-G GG---AAGCU AAGA-UUA-- 61 AG-GAUUAA- -GCCAUGC-A UGC-CA-GGU ---------- -------AUA AGCUA----A 121 UACAC----- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-AA -UCAG-UUGA -AA-UGUCU- -CGUG-CU-- 241 UUAUUCGUA- ---------- ---------- --------GU -C-GG-CUAA U-A-CGGG-- 301 CA-AC--UCU CUUACUA-A- --UCGUGCUU CGUUA----- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------C AUCGGUAGUG AGAGCGAUCU CGGGUUGAUU UAYGUUGUAA 1081 AAAUGACUGU UAGGC----- ---------- -------AGG -CAC-GAU-C AGCUU-CUGA 1141 --CGC-AUC- AU-UA--AG- -UAGGAG-AA -GUAA-AGG- UUA----UCC U-AUGA-GU- 1201 UCA-CGCG-U -A-CGGAGAA U-UAGGGUUC -GACU-CCGG A-GAAUG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UCAUAGU- 1741 UC-UAAGGGA -GGCA-GCA- GGC-GC--GG A-AAUU-GCC C-AA-UGUAC ----AAAC-- 1801 -G-UACGA-G GCA-G--UGA -CG------- ----AAAAAU -CUUG----- -U--CC---- 1861 -GGC------ --UUAG---- -G-C-C---- -G--GUAUU- -AAG------ ---------- 1921 ---------- ---------- ---------- ---------- -------CUG AGYGA----- 1981 ---------- AGGY-GYACC ACA------- -------UCG CGAA-CGCAA UUAGUG-GG- 2041 -AGA-G-C-A -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAUC-A- CUGAU-AG-C 2101 UUU-CUCU-- UACGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGCCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- --------UU GUUAGCCCCG ---------- ---------- ---------- 2881 ---------- --CGUGUCAC UUUGAGAAAA U-CGGAGU-G UUC-A-UU-A -CAGGGAAAC 2941 C-GCUGCACA GU-------- ---------- ---------- ---------- -ACAGCAA-A 3001 G-AAUGA-CA U-UGCUCC-C CGG-CGA--- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ----CGGGGG G-UAC-GGAG UAUA--UGGC G-GCGC---- ---------G 3421 GGACUG-AU- AG--UA-U-U UGGU-G-G-G G-A-CAG-GU GAAA-UAG-G AUGAUCCA-C 3481 CA-A-GG-AC UUUC-AACAG C-GAAG--GC A---GUCG-G U-AAG----- ---CGCCGUC 3541 C-A--GY-UG G-UC-AA-GA G-CGAAA--G UGUGAG-GAU -AGAC-GAUG --AUUA-G-A 3601 AAC-C-GU-- UUUAUUUCA- C--GC-CU-U -AAACGAU-A -CCAUCU-C- AGA------- 3661 -----AG--- ----CGGGCU ---------- ---------- ---------- --CAGA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------A --G-UCCG-- -----CA--- --------UC U-CAA----- 3901 ---------- GGGAAA-CC- GC---AAG-G UUU-CGGG-U -UCU-GGGGG -AAG-UAUGA 3961 U-U-GCAA-G AU-UGAA-AC UU-GAA---- --GGUA-UUG -ACGGAA-AG A-UA--CCA- 4021 CA-A-GACGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-U-- CU-GCGG-C- UC-AA-UUUG 4501 -ACUCAA-CA -CGC-A---- AAUCUUA-CC -AGACC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AU-G CU-U-UACGG AG--CAACA- 4621 GA--UUAAGA GU--UCUUUU G-CGAUU-G- GGCA-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GC-UC- CUA--GUUCG -U-GGU-GUA A-ACUGU-CU --GC-CUUAU U--GCGUU-A 5161 AC-GAG-C-G AGACA-AC-C A--------- ---------- --------C- -----CC-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CAGCC U-----GGG- 5521 --G------- ---------- ---------- ---------- -GG---AGCG C-CU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUGA-GC-A G-G-ACGAAY -GUGGUUGC- UCUAGCAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-ACA-CU C-UGGG-CCG -CACGCGUAC UA-CAAU-GU -C-GGC---U 5761 R---C-AC-A GCCGGUUC-- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----CG--G 5881 CC--UGAA-- GG-C----CC --GGCCAUUC GUGU-G--AA -CC-GC-C-- GA-C-G-UG- 5941 GUA-GGGAU- CGG---AG-A U-UGGAAUU- U-UUCUCCG- UG-AA-C-GA GGA-AUGUC- 6001 U-UGUA-G-G U-CUG-CG-U UAUUAG--CG C-GGGC-U-G -ACUAUGU-C CC-UGUCUUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- CUU-GGAU-G U-UU-U-GG- 6121 UGAGUU-GUC -CAGA----- --GUG-C-GC GCCU------ ---------- ---------- 6181 ---------- ---------- ---------- ----CGCG-- ---------- ---------- 6241 ---------- ---------- -GC--A-U-G C-AC----GA A--GUUCU-G CGAA-CCC-C 6301 A-A-UG-UCU GG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-C---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UGCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCCCCGG~~ ~~ // LOCUS Giar.intes 7872 bp RNA RNA 02-JUL-1998 DEFINITION Giardia intestinalis (diplomonad). REFERENCE 1 AUTHORS Upcroft,J.A., Healey,A., Mitchell,R., Boreham,P.F.L. and Upcroft,P. TITLE Antigen expression from the ribosomal DNA of Giardia intestinalis JOURNAL Nucleic Acids Res. 18, 7077-7081 (1990) REFERENCE 2 AUTHORS Healey,A., Mitchell,R., Upcroft,J.A., Boreham,P.F.L. and Upcroft,P. TITLE Complete nucleotide sequence of the ribosomal RNA tandem repeat unit from Giardia intestinalis JOURNAL Nucleic Acids Res. 18, 4006-4006 (1990) COMMENT Corresponding GenBank entry: X52949|g9351 clone= pKG1, pKG2, pMG1, pMG2 dev_stage= trophozoite common_name= diplomonad cell_line= BRIS/83/HEPU/106 NB: X52949 (4929...5566,1..814) BASE COUNT 228 a 536 c 557 g 139 u 6412 others ORIGIN 1 GCGCCCGGCC AUCCGGU-CG A--U-CC-UG CC-GG-AG-C GC--GACGCU -CUC-CCC-A 61 AG-GACGAA- -GCCAUGC-A UGC-C--CGC -----UC--- -------ACC CGG------- 121 ---------- ---------- ---------- ---------- ---------- ---GA---CG 181 C-G-----GC GGA-CGGC-U -C-AGGA-CA -ACGG-UUGC -AC-CCCCC- -GCGG-CG-- 241 GUCCCUGCUA ---------- ---------- --------GC -C-GG-ACAC C-G-CUGG-- 301 CA-AC--CCG GCGCCAA-G- --ACGUGCGC GCAAG----- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------G GCGGGCGCCC GCGGGCGAGC AGCGUGACGC AGCGAC---- 1081 ---------- ---------- ---------- -------GGC -CCG-CCC-G GGCUU-CCGG 1141 --GGC-AUC- AC-CC--GG- -UCGGCG-CG -GUCG-CGG- CGC----GCC G-AGGG-CC- 1201 CGA-CGCC-U -GGCGGAGAA U-CAGGGUUC -GACU-CCGG A-GAGCG-GG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -CGAGA-CGG C-CCGCACA- 1741 UC-CAAGGAC -GGCA-GCA- GGC-GC--GG A-ACUU-GCC C-AA-UGCGC ----GGC--- 1801 -G-CGCGA-G GCA-G--CGA CGG------- -----GGAGC -GC------- ---------- 1861 ---------- --GCGA---- ---------- ---------- --GC------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAG GCGGG----- 1981 ---------- --CC-CACAG CC-------- -------CCC G-CC-GCGGA GCCGAG-GG- 2041 -CAA-GGU-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CGGCG-AG-C 2101 GUC-GCGC-- GGCGCUGC-U --GCAGUU-- ----GAAACG CCCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --GCCCCCCG CCG-CCACGA G-GAAACG-G GAG-C-GC-U -CCAGGCAGG 2941 C-CCGUUGGA CCCGCCGCGU GGGACCGCGC AGCGGGC-CG GCGCGCCGCG GCAGCCCCGA 3001 GG-------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ------AGAG C-GGGC---- ---------G 3421 GGGGCA-CC- GG--UA-C-C GGCC-G-G-G G-A-CGG-GU GAAA-CAG-G AUGAUCCC-G 3481 CC-G-AG-AC CGCC-GGCCG C-GCAG--GC G---CCUG-C C-AAG----- ---ACCGCCU 3541 C-U--GU-CA A-UM-AA-GG G-CGAAG--G CCGGGG-GCU -AGAA-GGCG --AUCA-G-A 3601 CAC-C-AC-- CGUAUUCCC- G--GC-CG-U -AAACGGU-G -CCGCCC-C- GCG------- 3661 ---------- ----GCCGGC G--------- ---------- ---------- --CGCGCGUC 3721 C--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --------CG --C-CGGC-- ---------- --------CG C-CCA----- 3901 ---------- GGGAAA-CC- GGG--A-G-G CUC-CGGG-C -UCU-GGGGG -GAG-UAUGG 3961 C-C-GCAA-G GC-UGAA-AC UU-GAA---- --GGCA-UUG -ACGGAG-GG G-UA--CCA- 4021 CC-A-GACGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-U-- CU-GCGG-C- UC-AA-UCUG 4501 -ACUCAA-CG -CGC-G---- CACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-GACG-C GC-G--GAGG AC--CGACA- 4621 GC---CGGGC GC--GCUUUC G-CGAUC-G- CGCG-GG-CG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GC-UC- CCA--GCCCG -U-GGC-GCG A-GCCGU-CU --GC-UCCAU U--GCGAC-A 5161 AC-GAG-C-G AGACC-CC-G G--------- ---------- ------CCG- -----CG-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------GC G-----CCG- 5521 --CGG----- ---------- ---------- ---------- -GA---CGG- C-CC-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -GCGA-GC-G G-G-AGGACG -G-CGGGGC- GAUAGCAGG- UCUG-UG-AU 5701 GCCC-UC--- -AG-ACG-CC C-UGGG-CCG -CACGCGCGC UA-CACU-GG -CGGGG---C 5761 CA-GC-CG-- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCG -----CG--- 5881 -C--GCGA-- G-------GA --CGC----G --CG-G---A -GC-CC-CC- GC-C-G-UG- 5941 GCC-GGGAC- CGC---GG-G C-UGGAAC-- --GCCCCCG- CG-CA-C-CA GGA-AUGUC- 6001 U-UGUA-G-G C-GCC-CG-C CCCCAC--CG C-GCGC-C-G -GACGCGU-C CC-UGCCCCU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- CU--GGGC-G C-GG-C-GG- 6121 CGAGCG-CCC -C-------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- -------GGA CGCGCGAA-- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---GGGCC-G CGAG-CCC-C 6301 C-G-CG-CCU GG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUUCCGUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAUG-GA UCCCUC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Phys.pceph 7872 bp RNA RNA 02-JUL-1998 DEFINITION Physarum polycephalum str. CL (acellular slime mold). REFERENCE 1 AUTHORS Johansen,T., Johansen,S. and Haugli,F.B. TITLE Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: secondary structure and evolutionary implications JOURNAL Curr. Genet. 14, 265-273 (1988) COMMENT Corresponding GenBank entry: X13160|g3229 common_name= acellular slime mold isolate_name= CL BASE COUNT 484 a 462 c 560 g 458 u 5908 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G UG--UAUGCU -UCU-CCU-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUCCGA ---------- -------AUA GAAGAGCAAG 121 UCUCUCUGAA ---------- ---------- ---------- ---------- ---------U 181 C-U-----GC GAA-CGGC-U -C-CGCA-UA -CCAG-UUGU -AA-ACCAU- -AGCA-AG-- 241 CAAGCCGCGU UGUUGCCGCA AGGCGACGGC GCGGUUCACA -G-GG-AUAA C-C-CUGG-- 301 UA-AUU-CUG AGGCUAA-U- --ACAAGAAC GUA------- ---------- ---------- 361 --C-CACC-- -----CGCUU C--------- ---------- ---------- -----GACCC 421 GUAA------ ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GGGGAG- 541 ---GGC-GG- ---GGG--UU -GUGU-GACC C--------- --AGGUCG-- ---------- 601 ---------- ---------- ---------- ---------- ---------- CAAAUAUUAA 661 CUGGGAGUGG CCACA----- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ----CG-AUC U--GACCACC AUAC--CAAA CGGUUAU--- -------CC- G----CU--- 1021 -UC-----GA AA-------G CUUCGGUGAG UAACGGCGGA ---------- ---------- 1081 ---------- ---------- -UUUCUGGG- -U-GG-CUCU -CGC-UGU-G UGCUU-CUGA 1141 --CCU-AUC- AA-CU--AG- -AUGGCA-GC -GUAA-CGGA CAU----GCC A-UGGU-AA- 1201 CAA-CGGG-U --ACAGAGGA U-AAGGGUUC -GAUC-CUGG A-GAGUG-GG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UUG C-UCACACU- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-ACGU-UCC C-AU-UGGGC ----AAA--- 1801 -G-CUCGA-G GGC-G--UUA GGG------- -----GACAU -AU-GAAU-- -GC-CU---- 1861 -GCC------ --UUAU---- -G-G-U---- -G--GG-CAA -UUC------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGGGA----- 1981 --------CU GUUU-UAAAC AUCCUA---- -------UCG A-GU-AACAA UUAGAG-GA- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-CCC -GCGG-UAA- UUCCAGC-U- CUAAU-AG-C 2101 AUA-CGUU-- AAAGUUGU-U --GCGGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GCUCC 2221 A-G--A-CC- ----UUCAGA GCCUUGAUUC GGGACACUGG GUCAGCUGCU CUUCUCCAAG 2281 AGCGCGCCAA CUACUGAUGA UAGGGGACGU C--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- GG-UCAAUCG UGCCCUGGGC UGUCUCCCCC 2821 -C-CGGGGGA -GU-CAC--- AGGGUC---- -GUUC-AGC- -GGUCUUCGC GA-UCGC-GG 2881 --UUCG--GC --UCGGCUCG GGG-UACCAA U-CACCAU-G AUU-A-AA-C -CGUAGU--- 2941 G-ACCAA-AG C--------- ---------- ---------- ACGUCUUUAG ACGGGCACGG 3001 CACAGCA-UG G-GACGAA-- ACGC--ACC- G-GG-CUCGC CU-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- -----UU--U UUUUGCGGGG G--------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------CG UGA---CUCG G-UAA--AAG CGAAA-GGGA U-GUUC---- ---------- 3421 GAGGGU-GA- CC-GAA-U-U GCUG-G-G-C G-A-GUG-GU GAAA-UAC-G UUGACCCU-A 3481 GC-A-AG-UC GACC-AAAGG C-GUAA--GC A---GUCA-U C-AAG----- ---GGCAUUC 3541 C-C--GU-UG A-UC-AA-GA G-CGAAA--G UUAAGG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-UA-U -AAAUGAU-G -CAGACC-A- GGG------- 3661 -----AU--- ----AGGA-- -----C---- -AG-U----- ---------- --GUCCAUCU 3721 CG-------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -ACU--CU-- ----UCCG-- ----GA---- --------CC U-UG------ 3901 ---------- GAGAAA-UC- AC---GAG-U CUA-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA---CA- 4021 CA-A-AGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AU-A CA-C-GUAUG AAA-G-UCA- 4621 AG--CUGAAA GA--CUUUA- CUCAAUG-A- UGUA-AG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GUC-GU-UC- UUA--GUUCG -U-GGA-UUG A-UUUGU-CU --GG-UUUAU U--CCGAU-A 5161 AC-GAG-C-G AGACC-CC-G G-CGUUCCUA AUAGG-G-GU G-G---CAG- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- --------CC AGACCGGUCG CAAGACAGGU UAGCUCGCCA C--------- 5521 --CUG--AAG --U-UA-U-- ---G--CU-U C-UU-AGACG -UA---UCA- G-AG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GAUAA-GG-U U-C-UUGAAA -U--GGGUU- AAUAACAGG- UCAG-UC-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGU UA-CAAU-GG -CAUGU-A-A 5761 AA-CG-AG-U GCUUGAACAA GGCGUCC--- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CAC --------GG 5881 CC--GAAA-- GG-UC----- --GUG-GUAA --C--CCUU- -AGUCC-CU- GC-U-U-UG- 5941 ACU-GGGAC- AGA---UC-U U-UGCAAUU- A-UUGGUCU- CA-AA-C-GA GGA-AUUUU- 6001 U-AGUA-A-U C-GCA-GG-U CAUUAA--CC U-GCGU-U-G -AAUGCGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-G- C-U-ACCGA- UU--GGGU-U U-UA-C-AG- 6121 UUACGC-GUU -CGGA----- --GGA-C-GA UGUUUUC--- -GGGUCU--- ---------- 6181 ---------- ---------- ---------- ----UAAC-- --GG-GCUCC G---G----- 6241 ---------- -----GGCGU CGG--C-C-A A-AG---UUC U-----AA-C U--A-CUG-U 6301 A-C-GG-CCU AG-AGGA--- AGC-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AAUC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGUUUG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Entm.hist4 7872 bp RNA RNA 02-JUL-1998 DEFINITION Entamoeba histolytica (dysentery amoeba). REFERENCE 1 AUTHORS Sehgal,D., Mittal,V., Ramachandran,S., Dhar,S.K., Bhattacharya,A. and Bhattacharya,S. TITLE Nucleotide sequence organisation and analysis of the nuclear ribosomal DNA circle of the protozoan parasite Entamoeba histolytica JOURNAL Mol. Biochem. Parasitol. 67 (2), 205-214 (1994) REFERENCE 2 AUTHORS Ramachandran,S., Bhattacharya,A. and Bhattacharya,S. TITLE Nucleotide sequence analysis of the rRNA transcription unit IMSS JOURNAL Nucleic Acids Res. 21 (8), 2011 (1993) COMMENT Corresponding GenBank entry: X65163|g415339 (bases 522 to 2468) common_name= dysentery amoeba BASE COUNT 662 a 294 c 445 g 546 u 5925 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-U UA--UAUGCU -GAU-GUU-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AAGACCAA-G 121 UA-------- ----GGAUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GGA-CGGC-U -C-AUUA-UA -ACAG-UAAU -AG-UU-UC- -UUUGGUU-- 241 A-GUAAAAUA ---------- ---------- --------CA -A-GG-AUAG C-U-UUGU-- 301 GA-AUG-AUA AAGAUAA-U- --ACUUGAGA CGAU------ ---------- ---------- 361 -----CCA-- ----GUUUGU A--------- ---------- ---------- -----UUAG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---UACAAAA 541 ---UGG---- -CCAAUU-CA -UUC--AAUG AAUU------ --GAGAA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- AUGACA---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UCU A--AGUGAGU UA-G-GAUGC CACGACAA-- -------UU- G----UA--- 1021 -GA----ACA C--------A CA-------- ---------- ---------- ---------- 1081 ---------- ---------- --GUGUUUAA -C-AA-GUAA CCAA-UG-AG AAUUU-CUGA 1141 --UCU-AUC- AA-UC--AG- -UUGGUA-GU -AUCG-AGG- ACU----ACC A-AGAU-UA- 1201 UAA-CGGA-U -AACGAGGAA U-UGGGGUUC -GACA-UCGG A-GAGGG-AG -C-UUU---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -ACAGA-UGG C-UACCACU- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AC-UUUCG ----AAU--- 1801 -U-GAAGA-G GUA-G--UGA CGA------- ---CACAUAA -CUCU----- -AG-AG---- 1861 -UUGA----- -GUAAAA--- UC-A-A---- -U--UCUUGA --AG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGUAGGAG 1981 G--------- ---U-AAAU- ---------- -UCUCCUACG A-A--AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-U 2101 GUA-UAUU-- AAAGUUGC-U --GUGAUU-- ----AAAACG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUA 2221 A-A--A-UG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------U- G----GUUUU A------UA- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- CA-UU-UUGA AGACUUUAUG UAA-GUAAAG 2821 UUUCUAGAA- -AU-GUUA-- AAUUAAAAU- -CAAA-GAA- GGAAACAAUU CA--AGU-AA 2881 UUGAGU--UG --UUAUUACU UUG-AAUAAA A-UAAGGU-G UUU-A-AA-G -CAAAAC--- 2941 A-UUA----- ---------- ---------- ---------- ---UGUUAA- -UGAAUAU-U 3001 C-AAGCA-UG G-GACAAU-G CUG-AGGGG- A-UG-UCAA- -UAAG----- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------ACA UUUC---GAG A-GAA-GGAU UAAAA-GGAA C-AAUU---- ---------G 3421 GGGUGA-UU- CA--GA-A-A AUAA-C-G-G G-A-GAG-GU GAAA-AUC-C AUGAUCGC-U 3481 AU-A-AG-AU GCAC-GAGAG C-GAAA--GC A---UUUC-A C-UCA----- ---ACUGUGU 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCU- A--AC-UA-U -AAACGAU-G -UCAACC-A- AGG------- 3661 -----AU--- ----UGGAUG A----A---- -----AUUCA GAUGUAC--- --AAAGAUAG 3721 AGAAGCAUUG UUUCUAGAUC UGA------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- -----GUAUA 3841 UC-----AAU -AUUACC-UU --G-UUCA-- ----GAA--- --------CU U-AAA----- 3901 ---------- GAGAAA-UC- UU---GAG-U UUA-UGGA-C -UUC-AGGGG -GAG-UAUGG 3961 U-C-ACAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA---CA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AAGAC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-A-AC-A GU-A-GAAGG AAU-G-ACA- 4621 GA--UUAAGA GU--UCUUU- CAUGAUU-U- AUUG-GG-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CA --GG-UUAAU U--CCGGU-A 5161 AC-GAA-C-G AGACU-GA-A A-CCU-AUUA A-UUA-G-UU U-UC---UG- -----CC-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ------AUAA GACAGAAAUG UUCGCAAGAA C-----AGG- 5521 --UG---CGU --A--A-G-- UACCA-CU-U C-UU-AAAGG -GA---CA-- CAUU-UCAAU 5581 UGUCCUAUUU UAAUUGU--- ---------- --A-GUUAUC UAAUUUCGGU UAGACCUCUU 5641 UUAACGUGGG AAAAA-GA-A A-A-AGGAAG -CAUUCAGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-ACA-UC U-UGGG-CCG -CACGCGCGC UA-CAAU-GG -AGUUA-C-U 5761 AG-AG-AG-U AUUUUAUCAU UUACACCUUA UUUAUUAGGC UUUGUCUAAU AAUUAAGGAU 5821 AGUAAGUGGU GUA------- ---------- ---------- -------CCG ------A-GA 5881 UU--GAAAU- AG-UU----A --AGG-AAAA --CU-C-AAA -AG-AA-CG- UA-C-A-UG- 5941 ACA-GGGAU- AAA---UG-A U-UGGAAUU- A-UUUGUUU- UG-AA-C-GA GGA-AUUCC- 6001 U-UGUA-A-U A-UCG-AG-U CAUUAA--CU C-GAGA-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-A A-AG-A-GG- 6121 UGAAAU-UCU -AGGA----- --UUC-U-GU CU-------- ---------- ---------- 6181 ---------- ---------- ---------- -----UAU-- ---------- ---------- 6241 ---------- ---------- -AG--A-U-A G-AA----AA A---UGGAUU UAAA-UCU-C 6301 C-U-UA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Naeg.grube 7872 bp RNA RNA 02-JUL-1998 DEFINITION Naegleria gruberi str. NEG-M ATCC 30224 (schizopyrenid amoeba). REFERENCE 1 AUTHORS Clark,C.G. and Cross,G.A. TITLE Small subunit ribosomal RNA sequence from Naegleria gruberi supports the polyphyletic origin of amoebas JOURNAL Mol. Biol. Evol. 5, 512-518 (1988) COMMENT Corresponding GenBank entry: M18732|g159721 common_name= schizopyrenid amoeba isolate_name= NEG-M BASE COUNT 516 a 429 c 535 g 539 u 5853 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-C UA--UAUGCU -UGU-CUC-A 61 AA-GCCUAA- -GCCAUGC-A AAU-GUAAGA U--------- -------CAA UCAUAUGCGG 121 UUUCGGCCGU GUAUAAUGAU A--------- ---------- ---------- --------GU 181 C-U-----GU GGA-AGGC-U -C-AUUA-UA -ACAG-UUAU -AC-UC---- -CUAG-CCAC 241 UGGAAAGUUU A--------- ---------- --------CA -A-GG-AUAC C-A-CCGU-- 301 UA-ACU-GCA GCGAUA--U- --ACUUGUUC CCU------- ---------- ---------- 361 --UCGGGG-- ---------- ---------- ---------- ---------- -----UGG-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---UAA-UA- ---GUAU-UU GUGCU-GAAG ---------- --CCUAG--C UA-UUGUAAC 601 C-UAG----- ---------- ---------- -------UUU UUCGGGUGUG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CAUAUUCGG 901 GGGA------ ---------- ---------- ---------- ---------- ---------- 961 -----U-UAG GAAUCGACCG CUAG-CAGGU GCCU------ -------UC- GGGCGC---- 1021 -GG----GAA AG-------U GAAUUAACAA GGUUUUCAUA AGGCCUUUCA GGUUUGCU-- 1081 ---------- ---------- -UUUUCUAG- -U-GGCCAGG -CAG-AG--G AGUUU-CUUA 1141 --CCU-AUC- AG-CU--CG- -UUGUUU-GU -UUAA-AGG- ACA----AAC C-AGGC-UU- 1201 UGA-CGGG-U --ACGGGGAA U-CAGUGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UCG C-UACCACA- 1741 UC-UAAGGAC -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCUC- ---AAUAC-- 1801 ---GAGGA-G GUA-G--UGA CAA------- -----GCUAU -AGUGAC--U CCA-CACCAU 1861 UCGGUG--GG GAGGUAUU-G UC-U-UC--- -U--GACGAU -UUU------ ---------- 1921 ---------- ---------- ---------- ---------- -------CCA UGAUUUGGGU 1981 ---------- ---G-UAGAU A--------- --ACCCUUAG A-GU-AGCCA UUGGAG-GA- 2041 -AAA-G-U-C -UGGU-G-CC A-GC-A-CCC -GCGG-UAA- UUCCAGC-U- CCAAG-AG-C 2101 GUA-UAUU-- AAUACUGC-U --GUAGUU-- ----AAAACG CCCGUAGUAU ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----ACCUA 2221 A-G--A-GU- ----GGGUGU GUAGUAAUUA GUUUUACCAG AGGACGGUUG GCGAGAGUUU 2281 AUCACUCUUG UUUGCCUACU UUUGGUAGAC UUUAGUCGGG CUG------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- GA-UC----- UUUGGUCCUC GUC-UGACAG 2821 UU--GCUAC- -GU-ACUU-- ACUUACCA-- -CGGU-UCA- UCCGU---GA GG--CCC--U 2881 U--GG----C --UUGCAACU GUA-AAUAAA U-CGUUGU-G CUU-A-AA-G -C-GGGC--- 2941 U-AUGA---- ---------- ---------- --------UA CUCUGCC--- -AGAGCGA-U 3001 U-UAGCA-UG G-GACUGC-A GAGU-AGCU- G-UA-UUUG- -A-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- GCGAAGGUUG CA--CCU--C GGUGUGGCUG GAGCUUG--- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GUA CAGC--GCUU G-UAA-UGGA GCUCA-GGGU --GA------ ---------- 3421 -GGCCC--C- GG-GUA-C-C AUGA-G-G-C U-A-GAG-GU GAAA-UUC-U GAGACCCU-C 3481 AU-G-UG-AC CAAC-UAAGG C-GAAA--GC UGUCGUGG-G C-CAC----- ---CACAAGC 3541 U-C--GU-CU A-UC-AG-GG A-CAAAA--G UUGGGG-GAU -CGAA-GACG --AUUA-G-A 3601 UAC-C-GU-- CGUAGUCCC- A--AC-UA-U -AAACGAU-A -CCAACC-G- AGU------- 3661 -----AU--- ----UUGGGA -----A---- -GA------- ---------- --CACUAUCC 3721 CAGCCA---- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --UC-----U --U-CUCA-- ----GAA--- --------CU C-AA------ 3901 ---------- GGGAAA-CC- UU---AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUAG 3961 U-C-GCAA-G AC-CGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-AG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-U-- CU-GCGG-C- UU-AA-UUCG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -AG-G-AC-A CA-A-GUUUG AUU-G-ACA- 4621 GG--UUAAUA GC--CCUUU- CUUGAUU-G- UGUG-GU-GG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -AGUG-CAUG 5101 GCC-GU-UU- CCA--GUUCG -U-GGA-GUG A-UCUGU-CU --UG-UUAAU U--CAGAU-A 5161 AC-GAA-C-G AGACC-UA-A G-CCU--UUA A-CUA-G-CC G-U---AGG- --CC-UU-UU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ------CCUU 5461 CGGGGAAGGG UUAGUUUGUC GGAACAGGUU UCGGCCUGUU CCAAAACCUA C----GAGAC 5521 --UUU--UGU --C--A-G-- ------CU-U C-UU-AAAGG -GA---CUU- C-AU-UC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 -------GUA AACUA-GG-A U-G-AGGAAG -AUUUAGGC- CAUAACAGG- UCUG-UG-AU 5701 GCUC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGUAC UA-CAAU-AA -CGGUA-C-C 5761 AG-CG-AG-C GCUAUGGUUU UAUAACC--- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-AU 5881 CC--UAAUA- GG-AU----U --GGG-AAAA --CU-UUUCA -AA-CA-CC- GU-U-A-UG- 5941 ACA-GGGAU- CGA---GG-A U-UGGAAC-- --AUCCUCG- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GUG-GU-U CAUCAU--AC C-ACAU-U-G -AUUACGU-C CC-UGCCUUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UG--GGAC-G A-AG-A-GA- 6121 UGAACC-UGG -CGGA----- --CCG-A-AC C--------- ---------- ---------- 6181 ---------- ---------- ---------- ----GCAA-- ---------- ---------- 6241 ---------- ---------- --G--G-U-A A-GG---GAA A---CCAG-U UAAA-UCU-C 6301 U-U-CG-UCU GU-AGGA--- AGG-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUUC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGUAGG-GA UCAUUU~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Leis.donov 7872 bp RNA RNA 02-JUL-1998 DEFINITION Leishmania donovani str. SudanI (kinetoplastid). REFERENCE 1 AUTHORS Looker,D., Miller,L.A., Elwood,H.J., Stickel,S. and Sogin,M TITLE Primary structure of the Leishmania donovani small subunit ribosomal RNA coding region JOURNAL Nucleic Acids Res. 16, 7198-7198 (1988) COMMENT Corresponding GenBank entry: X07773|g9504 common_name= kinetoplastid isolate_name= SudanI NB: The sequence of L.donovani shows high homology to Crithidia fasciculata (97%) and to Trypanosoma brucei (84%). BASE COUNT 552 a 507 c 589 g 556 u 5668 others ORIGIN 1 .........G AUCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUAUGCU -UGU-UUC-A 61 AG-GACUUA- -GCCAUGC-A UGC-CUCAGA ---------- -------AUC ACUGCAUUU- 121 ---------- ----GCAGGA A--------- ---------- ---------- ---------U 181 C-U-----GC GCA-UGGC-U -C-AUUA-CA -UCAG-ACGU -AA-UCUGC- -CGCA-AA-- 241 AAUCUUGCGG UUUCCGCAAA ---------- --------AU -U-GG-AUAA C-U-UGGC-- 301 GA-AAC-GCC AAGCUAA-U- --ACAUGAAC CAA------- ---------- ---------- 361 --C-CGGG-- ----UGUUCU CCACUCCAGA CGGUGG---- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- --------CC AUCGUC---- GU-GAGACG- 541 ---CCC-AG- ---CG---AA UGAAU-GACA GUAAA----- --ACCA---- ---------- 601 ---------- ---------- ---------- ---------- ---------- AUGC-CUUC- 661 ---AC-UGGC AGUAACACCC AGCAG----- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------UGU U---GACUCA --AUUCAUUC CGUGCGAAA- -------GC- C----G---- 1021 -G-------- ---------C UUGUU----- ---------- ---------- ---------- 1081 ---------- ---------- -------CC- -G-GC-GUCU -UUU-GAC-G AACAA-CUGC 1141 --CCU-AUC- AG-CUGGUG- -AUGGCC-GU -GUAG-UGG- ACU----GCC A-UGGC-GU- 1201 UGA-CGGG-- -AGCGGGGGA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UAG C-UACCACU- 1741 UC-UACGGAG -GGCA-GCA- GGC-GC--GC A-AAUU-GCC C-AA-UGUC- -AAAACAAAA 1801 -C-GAUGA-G GCA-GCGAA- AAG------- ----AAAUAG -AGUU----- -GU-CA---- 1861 -GUCC----- --AUUU---- GG-A-U---- -U--GU-CA- -UUU------ ---------- 1921 ---------- ---------- ---------- ---------- -------CAA UGGGG----- 1981 ------G-AU AUUU-AAACC CAUCCAAUA- -------UCG A-GU-AACAA UUGGAG-GA- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-CCC -GCGG-UAA- UUCCAGC-U- CCAAA-AG-C 2101 GUAU-AUU-- AAUGCUGU-U --GCUGUU-- ----AAAGGG UUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUG 2221 U--------- ----GGGCUG UGCAGGUUUG UUCCUGGUCG ---UCCCGUC CAUGUCGGAU 2281 UUGGUGACCC AGGCCCUUGC AGCCCGUGAA C------AUU CAAAGAAA-- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- CAAGAAACAC GGG-AGUGGU 2821 UC--CUUUC- -CU-GAUU-- UACGCAUGU- -CAUG-CAU- GCC-----AG GG--GGC-GU 2881 CC-GUG--AU --UUUUUACU GUG-ACUAAA G-AAGCGU-G ACU-A-AA-G -C-AGUC--- 2941 A-UUU----- ---------- ---------- ---------- ----GACU-- -UGAAUUA-G 3001 A-AAGCA-UG G-GAUAAC-A AAGGAGCAG- CCUC-UAGG- --CUACCGU- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UU CGGCUUU--U GUUGGUUUUA AAGGUCUAUU GGAGAUUAUG 3181 GAGCUGUGCG ACAAGUG--- ---------- ---------- ---------- --CUUUCCCA 3241 UCGCAACCUC GGUUCGGUGU GUGGCGCCUU U-GAGGGGUU UAGUGCGUCC -GGUACGAGC 3301 UCCGGUUCGU CCGGCCGUAA CGCCUUUUCA ACUCACGGCC UCUA------ ---------- 3361 ---------- ---------- ----G-GAAU GAAGG-AGGG U-AGUUC--- ---------G 3421 GGGGAG-AA- CG--UA-C-U GGGG-C-G-U C-A-GAG-GU GAAA-UUC-U UAGACCGC-A 3481 CC-A-AG-AC GAAC-UACAG C-GAAG--GC A---UUCU-U C-AAG----- ---GAUACCU 3541 U-C--CU-CA A-UC-AA-GA A-CCAAA--G UGUGGA-GAU -CGAA-GAUG --AUUA-G-A 3601 GAC-C-AU-- UGUAGUCCA- C--AC-UG-C -AAACGAU-G -ACACCC-A- UGA------- 3661 -----AU--- ----UGGGGA U----C---- -UU------- ---------- --AUGGGCCG 3721 GCCUGCGGCA GGGUUUACCC UGUGUCCAGC ACCGCGCCCG CUUUUACCAA CUUACGUAUC 3781 UUUUCUAUUC GGCCUUUACC GGCCACCCAC GGG------- ---------- ---------- 3841 ---------- --AA--U-AU --C-CUCA-- ----GCA--- --------CG U-UUUCUGU- 3901 -UUUUUCAC- GCGAAA-GC- UUU--GAG-G UUA-CAGU-C -UCA-GGGGG -GAG-UACGU 3961 U-C-GCAA-G AG-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-UG G-CA--CCA- 4021 CA-A-GACGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- GU-GCGG-U- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AACUUUA-CC -AGAUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A GG-A-UGAGG AUU-G-ACA- 4621 GA--UUGAGU GU--UCUUU- CUCGAUU-C- CCUG-AA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GC-UU- UUG--GUCGG -U-GGA-GUG A-UUUGU-UU --GG-UUGAU U--CCGUC-A 5161 AC-GGA-C-G AGAUC-CA-A G-CUGCCCAG U---A-G-AA U-----UCA- -----GA-AU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 UGCCCAUAGG AUAGCAAACU CAUCGGCGGG UUUUACCCAA CGGUGGGCCG C----AUUCG 5521 GUCGA----- --A--U-U-- ------CU-U C-UC-UGCGG -GA---UUC- C-UUUGU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------A AUUGC-AC-A A-G-GUGAAA -UUUUGGGC- AACAGCAGG- UCUG-UG-AU 5701 GCUC-CU--- -CA-AUG-UU C-UGGG-CGA -CACGCGCAC UA-CAAU-GU -CAGUG-A-G 5761 AA-CA-AG-A AAAACGACUU UUGUCGAA-- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------A-CU 5881 UG-AUCAAA- AG-AG---UG --GGG-AAAC CCCG-G---A -AU-CA-CA- UA-G-ACUC- 5941 ACUUGGGAC- CGA---GG-A U-UGCAAUU- A-UUGGUCGC GC-AA-C-GA GGA-AUGUC- 6001 U-CGUA-G-G C-GCA-GC-U CAUCAA--AC U-GUGC-C-G -AUUACGU-C CC-UGCCAUU 6061 UGUA-CACAC C--GC-CCGU C-G-U-U-G- U-U-UCCGA- U---GAUG-G U-GC-A-AU- 6121 ACAGGU-GAU -CGGA----- --CAG-G--C GGUG------ ---------- ---------- 6181 ---------- ---------- ---------- -----UUU-- ---------- ---------- 6241 ---------- --------UA UCC--G-C-C C-GA---AAG UUC-ACCG-- -AUA-UUU-C 6301 U-U-CA-A-U AG-AGGA--- AGC-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AGCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGCUG-GA UCAUUU~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Eugl.graci 7872 bp RNA RNA 02-JUL-1998 DEFINITION Euglena gracilis (euglenophycean alga). REFERENCE 1 AUTHORS Sogin,M.L., Elwood,H.J. and Gunderson,J.H. TITLE Evolutionary diversity of eukaryotic small-subunit rRNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83, 1383-1387 (1986) COMMENT Corresponding GenBank entry: M12677|g167996 common_name= euglenophycean alga BASE COUNT 491 a 627 c 688 g 499 u 5567 others ORIGIN 1 .........A AUCUGGU-UG A--U-CC-UG CC-AG-CA-G U-CAUAUGCU -UUG-UUC-A 61 AG-GGCUAA- -GCCAUGC-A CGU-CUCAGC ---------- -------GCA AACGGAGUGA 121 ---------- ----CAGUGG A--------- ---------- ---------- ---------U 181 C-U-----GU GAA-UGGC-U -C-CUUA-CA -UCAG-CAGU -CA-UCUAC- -GUGA-UA-- 241 GAGUGUGCUC GGUCCACCUG CAAGGACCCC --------AU -U-GG-ACAU C-C-ACCA-- 301 AA-ACC-UUG UGGCUAA-U- --ACACGUUC GAC------- ---------- ---------- 361 --CCAGUCAG -------CCA U--------- ---------- ---------- -----GCAAC 421 ACUCGGCAGG GAUCCUGUCU CCGGACAGUC CCUUCACCG- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GUGG--- 541 --UGGC-GG- -AUGUAUGCC CAGCU-GAUA CGAAG----- --ACCAG-C- ---------- 601 ---------- ---------- ---------- ---------- ------GGCC GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCC----- 901 ---------- ---------- ---------- ---------- ---------- --AGUGUGUU 961 GGC--A-UGG U--UGACUCA --GG-CUGGC CCUCC----- -------GU- G-GCCG---- 1021 -CAG---UGC ---------U GGUGGAUUUC GUGCAUGCCU CGU------- ---------- 1081 ---------- ---------- ---GCAUGCC CC-AC--UUG AUCG-CAA-G AGCUU-CUGA 1141 --CCU-AUC- AG-CU--UG- -ACUGUG-GU -GUAU-CGG- ACC----ACA G-UGGC-CU- 1201 UGA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACU- 1741 AC-CAAGGUG -GGCA-GCA- GGC-AC--GC A-AAUU-GCC C-CA-UGCA- -AAGACAGUC 1801 ---UGUGA-G GCA-GCGAC- GAA------- ----CAGUAG -CAAC----- -CC-CG---- 1861 -UCGGC---- CUUACGU--G CC-G-A---- -U--GG-GGC -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGGAC----- 1981 ------G-CU AUCC-AAAGA CAGCC----- -------GUG A-GU-AUCAA CCGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCU -GCGG-UAA- UUCCAGC-U- CCGAG-GG-C 2101 GUAU-ACU-- AACAUUGC-U --GCUGUU-- ----AAAACA CUUGUAGUCU ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GCCUA 2221 C--------- ----GGGCUG CAGGUCUGCU GGGUGGCCGG UUUGUUGUUU CUCUGGCCAG 2281 GGAAGGACCU CGGUUCGACC CUGUGUUGGG CUGCAACGGC UGGACUCAAC CCCCAGUGGU 2341 ACGUCCCUGC GCCCACCUCU CAGUCGAUGG UGAGAUCUGC UCCUGCCAAA AGUCUG---- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- -CUUCACUGC AGGCCAAAGC GGUUUAUGCC UCCCGCACUG 2761 GCAACG---- ---------- ---------- ---------G ACACCAACAG GGG-ACCCAG 2821 CC--UCGAGC UGG-GUAG-- UCUACCUCU- -GGUC-CAC- CAC-----CG GA--GCC-CA 2881 CC-GUC--UU ---CGACACC CUG-GAAAAC U-CAGUGU-G CUC-A-AA-G -C-AUCC--- 2941 C-CGCGAC-- ---------- ---------- ---------- ----GGCU-- --GAAUGU-C 3001 C-AUCCA-UG G-AAUGUC-A AGGCAUCGA- CCAA-GUGU- -GGCAUUGG- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ------AGUU GUGCUGC--C UUGGGGCCCA CUCUGGACAA CCUGGUGGUG 3181 UGUUCCUGCA --GGA----- ---------- ---------- ---------- ---------- 3241 ---------- ------UCAA CAGGAUCGUU GCCCUGCCUG GCCUUC-GGG UCUCGUCAGG 3301 CUUCGUCCCC UGUCCCUGCA GCUUGCACCC AUCGAUCG-- ---------- ---------- 3361 ---------- ---------- ----U-AAGU GAU-G-GGAC U-GUUC---- ---------G 3421 GGGUGA-AA- GA--UA-C-G GGAG-C-G-C C-A-GAG-GU GAAA-UUC-U UAGAUCGC-U 3481 GC-C-AG-AU CCAC-UGCAG C-GAAG--GC G---UUCU-G C-AAG----- ---UGCACGU 3541 C-C--GU-CG A-UC-AA-GA A-UGAGA--G UUCGGG-GAG -CAAA-GAUG --AUCA-G-A 3601 CAC-C-GU-- CGUAGUCCG- GCCAC-UG-U -AAACGAU-G -CCGGCC-A- GGCCU----- 3661 ---------- ----UGGCAG A--------- -G-------- ---------- --CAAGAAUC 3721 CUAGA----- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---C----UC --U-GUCA-- ---------- ------GGGC C-ACUCCUCC 3901 -CACAAC--- GAGAAA-UC- C-A--CAG-C CUG-UGGG-U -UCA-GGGGG -GAG-UACUG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-UG G-CA--CCA- 4021 CA-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-U-- AU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CG -CGG-G---G AAUGUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -AG-G-AC-G CA-A-CUGGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUC-U- UGUG-GA-CG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GC-UC- CUG--AUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUGAU U--CCGAU-A 5161 AC-GAG-U-G AGACA-UC-U G-CCU-CCC- A-CUA-G-CC U-----GAGG -----CU-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- -------GCA UUUGGUAGGG UUCGGCUGCU 5461 CGGUGGCAGC CCCCUGGCAA CAGGGGGAGA UGUACCGGUG CAUGCUCCCG A-----GAG- 5521 -CCUCCAGUU C-A----G-- ------CU-U C-UC-UGAGG -UG---CUG- U-GU-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 -------GCC ACAAA-GG-G C-A-UGCAUG -CUAGAGCC- AACAGCAGG- UCUG-UG-AU 5701 GCUC-CC--- -AG-AUG-UC C-UGGG-CCG -CACGCGCAC UA-CAUU-GU -CACAG-U-G 5761 AA-GG-UG-U CGACAUGCCC ACUCCGGUGG G--------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UG-GC 5881 CU--GAAG-- AG-GC----U --GGG--AAA --UC-CUGCA -AGCCU-GU- GA-C-G-UA- 5941 CUG-GGGAU- AGA---UG-G U-UGCAACU- G-UCUGCCU- UG-AA-C-GU GGA-AUGCC- 6001 U-AGUA-U-G C-CUG-GG-U CAUCAG--CC C-AGAC-C-G -AUUGUGU-C CC-UGCCAUU 6061 UGUA-CACAC C--GC-CCGU C-G-U-U-G- C-U-ACCGA- U---GGUG-G C-UG-G-AU- 6121 AGAG-U-CAU -CAGG----- --AGG-U-UG UGGAGGCGG- --CCUCU--- ---------- 6181 ---------- ---------- ---------C GGGGCAGU-- --AG-AG--- ---------- 6241 ---------- -------CAU -CC--C-A-G C-CG---AAA U---UGGA-- CGAU-GUC-C 6301 A-G-CC-ACU AG-AGGA--- AGC-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UGCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGCAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Hpls.nlsni 7872 bp RNA RNA 02-JUL-1998 DEFINITION Haplosporidium nelsoni (parasite of oysters; alveolate). REFERENCE 1 AUTHORS Fong,D., Man-Ying Chan,M., Rodriguez,R., Chen,C.C., Liang,Y. and Littlewood,D.T.J. TITLE Small subunit ribosomal RNA gene sequence of the parasitic protozoan Haplosporidium nelsoni provides a molecular probe for the oyster MSX disease JOURNAL Mol. Biochem. Parasitol. 62, 139-142 (1993) COMMENT Corresponding GenBank entry: X74131|g416176 common_name= parasite of oysters; alveolate BASE COUNT 508 a 360 c 435 g 483 u 6086 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CCAAGU ---------- -------AUA AACACGUUUU 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC AGA-UGGC-U -C-AUUA-CA -ACAG-UUAU -AA-UUUAU- -UUGG-AA-- 241 UGUAAAAUUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AC--CUA GGGCUAA-U- --ACGUGAUA AAUG------ ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---GUAC-GU -GUUA-GUCA AA-------- --AACCA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- UCAU------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-GGU U---GCAUAU A-UA-ACAU- ---------- -------UG- CUUCCG---- 1021 -AU------- ---------C GCGUGGGUUA AAAACCA--- ---------- ---------- 1081 ---------- ---------- ------GUC- -G-UA-CAAA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CU--UG- -ACGGUA-GG -AUAU-GGG- CCU----ACC G-UGGC-UA- 1201 UGA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CGGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CACGGAC -GGCA-GCA- GGU-GC--GC A-AAUU-ACC C-AC-UUCUG ----ACU--- 1801 -C-AGAGA-G GUA-GUGAC- AAG------- ----ACAUAA -CGAU----- -GU-GC---- 1861 -AGCC----- --UAUC---- GU-G-U---- -G--CC-UAG -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------UAA UGAGA----- 1981 ------A-CA AUUU-AAAAU CAUUA----- -------UCG A-CU-AACAA GUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UACCAGC-U- CCACU-AG-C 2101 GUAU-ACU-- AAAGUUGU-- --GCUGUU-- ----AAAACG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUAU 2221 C-A--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -A-UGUG--- -AGCG----- 2521 U-GGA--CA- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -----GGGU- GU----GUAU ------ACAU 2641 UC----GGGA UCCAGACAAC -U--U-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UU- GCU------C ACCA------ AA-CU----- ---UAAUUCA GGA-CUGCCA 2821 UU--CUGAC- -C--AUU--- UCUGUGGCU- -C--G--GG- -UUG-GCGUG U---CCU-G- 2881 --------AU --CUUUUACU UUG-AGAAAA U-UAAAGU-G CUC-A-AA-G -C-AGGC--- 2941 U-UU------ ---------- ---------- ---------- ---CGCC--- -UGAAUGC-A 3001 U-UAGCA-UG G-AAUAAU-A AAAC-ACGA- C--U-UUGG- -CAUUA---- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 -----GGUUU CAGACCUAAG UG--UUU--U AUUGGUU--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UUUG GGCC---AAA G-UAA-UGAU UGAUA-GGAA C-ACCU---- ---------G 3421 GGGGUG-CU- AG--UA-U-C AUCG-G-G-U U-A-GAG-GU UAAA-UUC-U AUGACCCC-G 3481 GU-G-AG-AC UGAC-UUAUG C-GAAA--GC A---UUCA-U C-AAG----- ---UGUGUUU 3541 U-C--UU-UA A-UC-AA-GA A-CUAAA--G UUGGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCC- A--AC-UA-U -AAACUAU-G -UCGACU-A- AGC------- 3661 -----AU--- ----UGGG-- -----C---- -AA-G----- ---------- --UUUA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -CUU------ ---CCUCA-- ----GAA--- --------CU U-UGA----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-CGGA-C -UCA-GGGGG -GAG-UAUGC 3961 U-C-GCAA-G GG-UGAA-AC UU-GAA---- --GAAA-UUG -ACGGAA-CG G-CA--CCA- 4021 CC-A-GAUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -C-------U AAACUUA-CC -AGGAC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUCA-A GU--UCUUU- CUUGAUU-C- -AUG-CA-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCA-UCUA A-CUA-G-CU G--------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- UCGCUACAUC GGUUAGCGUC ACCAACACAU A--------- 5521 ---------- --C--A-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------G AUGCA-GC-A G-A-UGGAAG -AAUGAGGC- AAUAACAGG- UCAG-UG-AU 5701 GCCC-UU--- -AG-AUG-CU C-UGGG-CUG -CACGCGCGC UA-CAAU-GU -UGCAC-G-U 5761 AA-CG-AG-U UCA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GC 5881 CU--GAGA-- AG-GC---CG --GGU--AAU --CU-C--GA -AA-AU-GC- AU-C-A-AA- 5941 GUU-GGGAU- AGA---UG-A U-UGCAAUU- G-UUCAUCU- UG-AA-C-AA GGA-AUAUC- 6001 U-AGUA-A-A C-GCA-AG-U CAUCAA--CU U-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-U- C-U-ACCGA- UU--GAAU-A A-UA-C-GG- 6121 UCAACU-GGG -UGGA----- --UGU-U-AG AGAC------ ---GAUU--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --GA-UC--- ---------- 6241 ---------- --------GU -UU--C-U-- G-CA---GAA G--CUUCG-- UGAA-CCU-U 6301 A-U-UA-UUU AG-AGGA--- AGG-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UACC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Dict.disco 7872 bp RNA RNA 02-JUL-1998 DEFINITION Dictyostelium discoideum (cellular slime mold). REFERENCE 1 AUTHORS McCarroll,R., Olsen,G.J., Stahl,Y.D., Woese,C.R. and Sogin,M TITLE Nucleotide sequence of the Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: Evolutionary implications JOURNAL Biochemistry 22, 5858-5868 (1983) COMMENT Corresponding GenBank entry: K02641|g167870 common_name= cellular slime mold NB: Base 542 is a purine in a highly conserved region in all eukaryotic small subunit rRNA sequences. By comparison with other sequences [1] concluded that this base is probably 'g'. By the same reasoning base 562 is probably 'a'. ref compares the sequence presented here with eukaryotic 17S subunit rRNA gene sequences of other organisms, to obtain phylogenetic information. BASE COUNT 531 a 347 c 447 g 544 u 6003 others ORIGIN 1 .........U AACUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AAUUCUU--G 121 UA-------- ----CGAUGA A--------- ---------- ---------- ---------A 181 C-U-----GC AGA-CGGC-U -C-AUUA-CA -ACAG-UGAU -AA-ACUAA- -UAGA-CU-- 241 UUCGGGUUUU ACCU------ ---------- --------UU -U-GG-AUAA C-C-GCAG-- 301 UA-AAU-C-G GGGCUAA-U- --ACAUACAA GCG------- ---------- ---------- 361 --A-UGGG-- ----UGACUG ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----CGGAAG 541 ---CUC-A-- ---GCGA-UU -AUUA-GCAU UCU------- --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGU------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -UU--U-GGG U---GAUACC --GA-AUAAU AUUGCAGA-- -------UC- G----A---- 1021 -GG----A-- ---------U UUA------- ---------- ---------- ---------- 1081 ---------- ---------- -----UCUU- -C-GA-CAAG -UCU-ACU-G UGUCA-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -GUAU-UGG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACU- 1741 UC-UACGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACU C-AA-UCCC- ---AAUAC-- 1801 ---GGGGA-A GUA-GUGAC- AAU------- ----AAAUAU -CAAU----- -AC-CU---- 1861 AUCCU----- --UUUU---- -G-G-A---- -G--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGAAC----- 1981 ------A-CA AAUU-AAAAC UCUUA----- -------AUU A-A--CACAA UUGRAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-R-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 AUAU-ACU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAGUU 2221 U-A--A-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------U UU-ACCG--- GGUUU----- 2521 -------AUG UCAUUU---- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------ACC- AC-----UUC ------GUGG 2641 U--------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UA- AAUCGACACC GGU-AUC--- UC-UU----- ----UCUUAA UAG--UUCAG 2821 CU--UG---- ---------- -UAUUAU-C- -UU-U--GA- UA-------G UG--CUU-GU 2881 UU-GG---AC --AUUUCACU GUG-AGAAAA U-UGUGGU-G UUU-A-AA-G -C-AGGC--- 2941 G-UC------ ---------- ---------- ---------- ---UCGCC-- -UGAUCUU-U 3001 UGCAGCA-UG G-UAUGAU-G AAAC-AUGA- C----AU--- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UU UA--CGC--U AUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------GCGU UUA---AAGU G-UAA-UGAU UAAUA-GGGA U-GGAU---- ---------G 3421 GGGGUG-UU- CA--UA-U-U GGUG-G-G-C G-A-GAG-GU GAAA-UUCGU UGACCCUA-- 3481 UC-A-AG-AU GAAC-UUCUG C-GAAA--GC A---UUCA-C C-AAA----- ---UACUUCC 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUUGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCA- A--AC-UA-U -AAACUAU-G -UCGACC-A- GGG------- 3661 -----AU--- ----CGGUUA A----A---- -AU-UUU--- ---------- --UUC----- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AA -AAU----UU --A-AUCG-- ----GCA--- --------CC U-UGU----- 3901 ---------- GAGAAA-UC- AU---GAG-U GUU-UAGA-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G UC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA---CA- 4021 CA-AUGAAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CU -CGG-G---A AAACUUA-CC -AAGCU---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G-AU-A UA-G-UAAGG AUU-G-ACA- 4621 GA--CUAAAA GA--UCUUU- CAUGAUU-C- UAUG-AG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GUC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UCAAU U--CCGAU-A 5161 AC-GGA-C-G AGACC-UC-G A-CCU-GCUA A-CUA-G-UA G-U---AUU- -----UA-UU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- -------AGU CGAUAUAGAC GAUAGCUUUU CUGGGGUUUG 5461 GAAUGAUUUC GGUCAUCUCC UGCUUCAAGG AGUGUGUAGU CUGACUCGAU A----GGUAC 5521 G-AAU----- --U--A-A-- -AA---CU-U C-UU-AGAGG -GA---CUA- C-CU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- CUCAA-GC-A G-G-CGGAAG -UCCGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUA-CC U-UGGG-CCG -CACGCGCGC UA-CAAU-GU -AGGAA-A-C 5761 AA-AA-AG-G CU-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UG-GU 5881 CC--GGAA-- GG-AU---UG --GGU--AAU --CA-UUUGA -AU-UU-CC- UA-C-G-UA- 5941 ACU-GGGCU- UGA---UC-U U-UGUAAUU- A-UUGAUCA- UA-AA-C-GA GGA-AUUCC- 6001 U-UGUA-A-G C-GUA-AG-U CAUUAC--CU U-AUGC-U-G -AAUAUGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UC--GAAU-G A-UA-C-GG- 6121 UAAAGU-UAA -CGGA----- --UCG-U-UU UAUC------ --U-GUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CA-C---- ---------- 6241 ---------- -------UGA UAU--A-A-A U-UA---AAA G---UUAU-U UAAA-UCU-C 6301 A-U-UG-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAUG-GA UCAUUU~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Acnt.castl 7872 bp RNA RNA 02-JUL-1998 DEFINITION Acanthamoeba castellanii (amoeba). REFERENCE 1 AUTHORS Gunderson,J.H. and Sogin,M.L. TITLE Length variation in eukaryotic rRNAs: Small subunit rRNAs from the protists Acanthamoeba castellanii and Euglena gracilis JOURNAL Gene 44, 63-70 (1986) COMMENT Corresponding GenBank entry: M13435|g155632 common_name= amoeba BASE COUNT 531 a 540 c 651 g 581 u 5569 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUGUUUA 121 UA-------- ----CGGCGA G--------- ---------- ---------- ---------A 181 C-U-----GC GGA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUCUCUUUUG UCUUUUUUUA CCUA------ --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGC AAG------- ---------- ---------- 361 --G-UCCC-- ---GAGCGCG GGGGGCAGGG CU-------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- --------GG CCCUGUCCUC GCAU-GCGCA 541 GA-GGG-AU- ---GUAU-UU -AUUA-GGUU AAAA------ --ACCAG-CG ---------- 601 ---------- ---------- ---------- ---------- GCAGGGGUCA GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -UGGCCCCUG 901 C--------- ---------- ---------- ---------- ---------- ----CAAACA 961 CUC--C-UGG U---GAUUCA --UA-GUAAC UCUUUCGGA- -------UC- G----CAUU- 1021 -CAUG--UCC UC-------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- -GGGGACGG- -C-GA-CGAU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-CG- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACU- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-AG---- 1861 GCGCUC---- -GAUAA---G AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAACC CCUUA----- -------ACG A-GU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 A--------- ----GGGACG CGCAUUU--- CAAGCGCCCG UGUCGUCGGG UCAAACCGGC 2281 GACUGCGUUG GCGUUGCGGG CUCGGUCCGU CGGUG----- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- -GACCCU-CG U--GGUCUUA AUCGGCGUGU 2701 CAACCGGCCC GCCCGUCCCC UCCUUCUGGA UUCCCGUUCC UGCUAUUGAG UUAGUGGGGA 2761 CGUCAC---- ---------- ---------- ---------- ----AGGGGG CU--CAUCGU 2821 CG--U-CAUG -----CAA-- A----UGGC- -GGC--GGU- G-GGUC---C CU--GGG-GC 2881 CC-AG---AU --CGUUUACC GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-GAUCC-AA UUUUCUG--- ---------- ---------- ---CCACC-- --GAAUAC-A 3001 U-UAGCA-UG G-GAUAAU-G GAAU-AGGA- CCCU-GUCC- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UAUUUUC--A GUUGGUUUUG GCA------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ----GCGCGA GGAC--UAGG G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- AA--UA-U-U UAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AU UAAC-UUCUG C-GAAA--GC A---UCUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACGAU-G -CCGACC-A- GCG------- 3661 -----AU--- ----UAGGAG A----C---- -GU-U----- ---------- --GAAUACAA 3721 AACACCACCA UC-GGC--GC -GGUCGUCCU UGGCGUCUGU CCCUUUCAAC GGGGGCAGGC 3781 GCGAGGGCGG UUUAGCCCG- GUGGCACCGG UGAAU----- ---------- ---------- 3841 ---------- -GAC----UC --C-CCUA-- ----GCA--- ---------G C-UUGU---- 3901 ---------- GAGAAA-UC- AU---AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-U-GC CGCGCUAAC- -----CC--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 GUCCAUCAAA ACCCAUGCGU GGCUCACGCG GUCCGCUGCG GGGUGGU-GU CGCU----UC 5461 GC---GGCG- ACGUCAUCCC GCCGGCAGGG CCCGGGUCCG UGUGGGCGGU A------GG- 5521 --GUU----C --G--G-C-G UCCGUGCU-U C-UU-AGAGG -GA---CUG- C-UGCGC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCCUA-GC-C A-G-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UUAAU-C-C 5761 AA-CG-AG-U CCGCUUCAAU CGAGGCGCGA UG-CC-GU-U GGGGUCAAAC CCAA-CU--G 5821 UGUC-GCUGU CCUCGAUCGC ---------- ---------- -------GCC -----UG-GG 5881 CC--GAUA-- GG-UC---CG --GGU--AAU --CU-UUGCA -AA-UU-UA- AU-C-G-UG- 5941 CUG-GGGAU- AGA---UC-A U-UGUAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAAU-CCU -CGGA----- --GCC-G-UG GCCUCUACG- --CAAUCCGG ---------- 6181 ---------- ---------- ---------- ----GCAA-C CGGGCUUGUG AGGUCU---- 6241 ---------- ----CCCCU- UUU--G-G-C G-GC---GAA G---UCGA-U UGAA-CCU-U 6301 A-C-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAGG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Crpm.phi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cryptomonas phi (2-flagellae cryptomonad). REFERENCE 1 AUTHORS Douglas,S.E., Murphy,C.A., Spencer,D.F. and Gray,M.W. TITLE Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes JOURNAL Nature 350, 148-151 (1991) COMMENT Corresponding GenBank entry: X57162|g18077 common_name= 2-flagellae cryptomonad BASE COUNT 474 a 350 c 477 g 474 u 6097 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUUAGU ---------- -------GUA AAAUAACUC- 121 ---------- ----UAUUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UG-- 241 GUUCCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAC CAAG------ ---------- ---------- 361 --G--CCC-- -----GACU- ---------- ---------- ---------- -----CAC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGA-- 541 ---GGG-UU- ---GUAU-UU -AUUA-GAUU CAAA------ --ACCAG--- ---------- 601 ---------- ---------- ---------- ---------- ---------- CACCAC---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----C-UGG U---GAUUCA --UA-GUAAC UAAACGAA-- -------CC- G----CA--- 1021 -UG----CC- ---------U UUAU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGUGG- -C-GG-UGAU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UU- 1201 UAA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACU--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCC----- --AAC----- GG-U-C---- -U--UG-UUA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCAA UUAGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAAGU 2221 C-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UCGG--- -GCAG----- 2521 GCUGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------G- GC----CUCG ------GUU- 2641 ---------- --------G- GGC-A-GC-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- UGC------U UGG------- GU-CU----- -----UCUAG CUC-GGGG-- 2821 -G--CCCCG- -U--GCCA-- UUUAACC-G- -UG-G--UG- CGC------G GG--AAC-AC 2881 ---GG---GC --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUU-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-G GAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------GC UA--UUU--C GUUGGUU-AA ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------UG GGAC--CGAA G-UAA-UGAU UAAAA-GGGA C-AGUU---- ---------G 3421 GGGCCG-UU- UA--UA-U-U UCGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 GA-A-AG-AU AAAC-UUCUG C-GAAA--GC A---UUCG-G C-AAG----- ---GAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CAGUGG A----U---- -GU-C----- ---------- --AAUUUGC- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----GC --C-AUUG-- ----GCA--- --------CC U-UGU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAAA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CA U-----CGC- ---G-AA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------AUU G-----AUU- 5521 G-GCG----A --G--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-UU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-AU-G A-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAC-G-C 5761 AA-CG-AG-C UCGAC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UG-AA 5881 CC--GAAA-- GG-CC---UG --GGU--AAA --CU-UGUGA -AA-GU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAAU-CUU -CGGA----- --UUG-C-UG GCCAU----- --UUGCC--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --GG-UGA-- ---------- 6241 ---------- --------GU -GG--U-U-G C-GA---GAA G---UUGA-U UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Cynp.parad 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cyanophora paradoxa (colorless flagellate alga). REFERENCE 1 AUTHORS Steinkotter,J., Bhattacharya,D., Semmelroth,I., Bibeau,C. and Melkonian,M. TITLE Prasinophytes form independent lineages within the evidence from ribosomal RNA sequence comparisons JOURNAL J. Phycol. 30, 340-345 (1994) COMMENT Corresponding GenBank entry: X68483|g505368 (bases 12 to 1770) common_name= colorless flagellate alga BASE COUNT 475 a 344 c 448 g 492 u 6113 others ORIGIN 1 .......... .......... .......... .......A-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUAUUUU- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA CAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-CA C--------- 601 ---------- ---------- ---------- ---------- -------CGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCG------ 901 ---------- ---------- ---------- ---------- ---------- -------GAU 961 CCC--U-UGG U---GAUUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------U UUAC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGCU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-AG- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-CG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UGG C-GACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCGC- ---AACUC-- 1801 ---GCGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GGCUU---- --UUC----A AG-U-C---- -U--CG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------UCG A-GG-AUCCA UUGGAG-GG- 2041 -AAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -GCAG----- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------UG-- CC----UAAU ------AGGU 2641 G--------- --------UG UA-CU-GG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- UGUA-----C CCG------- UC-CU----- ----UCCU-U CCG-GGG--- 2821 AU---GGGUG CUG-CUC--- UUAACU---- -GA-G--UG- --GC-----A UU-CAGA-CA 2881 C--GG---AU --CUUUUACU UUG-AGUAAA U-UGGAGU-G UUU-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGAACAUUA 3001 U-UAGCA-UG G-AAUAAU-A AAAU-AGGA- C--C-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GAUU---GGG G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- CA--UA-U-U CCGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 GG-A-AG-AU GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACGAU-G -CCGACU-U- ACG------- 3661 -----AU--- ----CAGCAG G----U---- -GU-U----- ---------- --AAUUUAAC 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --U-GUUG-- ----GCA--- --------GU A-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-ACUA A-AUA-G-UU A-----CACG -----AA-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UUCU A-----GUU- 5521 -CGUG----G --U-CA-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-UU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AU-G A-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGAAU-U-C 5761 AA-CG-AG-U UUUUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CU -----UG-AC 5881 CG--AUAG-- G--UC---UG --GGU--AAU --CU-UU-GA -AA-CU-UC- GU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GUG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAUCG G-UC-C-GG- 6121 UGAAAU-CUU -CGGA----- --UCG-U-GG CCAU---GUA --CCUGG--- ---------- 6181 ---------- ---------- ---------- -----UCU-- --CC-AGGAA ----C----- 6241 ---------- ---------A AGG--U-C-G C-GA---GAA G---UUGA-U UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC..... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Ccdd.immit 7872 bp RNA RNA 02-JUL-1998 DEFINITION Coccidioides immitis (deuteromycete fungus imperfecta). REFERENCE 1 AUTHORS Bruns,T.D., Vilgalys,R., Barns,S.M., Gonzalez,D., Hibbett,D.S., Lane,D.J., Simon,L., Stickel,S., Szaro,T.M., Weisburg,W.G. and Sogin,M.L. TITLE Evolutionary relationships within the fungi: Analyses of nuclear small subunit rRNA sequences JOURNAL Mol. Phylogenet. Evol. 1, 231-241 (1992) COMMENT Corresponding GenBank entry: M55627|g167304 common_name= deuteromycete fungus imperfecta NB: former name Coccidiodes immitis BASE COUNT 468 a 379 c 486 g 465 u 6074 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUUU-- 121 GUA------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CA -U-GG-AUAC C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-CCUC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--U-UGG U---GAUUCA --UA-AUAAC UUGUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-GG- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCC- ---AACAC-- 1801 ---GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUC---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CU-G---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---UUCGC G-----GCG- 2641 ---------- --------UG CA-CU-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-G------C UGG------- AC-CU----- ----UUCCUU CUG-G-GGAA 2821 CC-----CU- -AU-GGC--- CUUCACUG-- -GC-U--GU- --AG------ GG--GGA-AC 2881 C--AG---GA --CUUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UU------ ---------- ---------- ---------- ---UGCUC-- --GGAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUC---- ---------G 3421 GGGGCG-UC- AG--UA-U-U CGGC-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUG-C 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUCG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AGUGA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGACG G----G---- -CA-A----- ---------- --CUUUGAAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -AAC----CC --G-UUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- -U-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A AA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUC-U- UUUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GACC- -----CA-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GUU U-----GUG- 5521 --GGC-C--- GCU--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CAGGG-C-C 5761 AG-CG-AG-U ACAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAGA-- GG-UC---UG --GGU--AAU --CU-UGUUA -AA-CC-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-ACA-AG-U CAUCAG--CU U-GUGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-CUU -CGGA----- --CUG-G-CU CAGG---GA- --GGUUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-ACCA- ----C----- 6241 ---------- --------CC -AG--A-G-C C-GG---AAA G---UUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAG~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Tlrm.bacil 7872 bp RNA RNA 02-JUL-1998 DEFINITION Talaromyces bacillisporus (unitunicate ascomycete fungus). REFERENCE 1 AUTHORS Yoshimura,A. and Sugiyama,J. TITLE JOURNAL Unpublished (1994) REFERENCE 2 AUTHORS Kawaguchi,R., Nagaoka,T., Takeyama,H., Burgess,G.J., Sode,K. and Matsunaga,T. TITLE DNA sequence and analysis of a cryptic 2.6-kb plasmid from the marine cyanobacterium, Synecococcus sp JOURNAL Unpublished (1993) COMMENT Corresponding GenBank entry: D14409|g558539 common_name= unitunicate ascomycete fungus BASE COUNT 454 a 384 c 486 g 449 u 6099 others ORIGIN 1 .......... .......... .......... ....G-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -CAAUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACC-UACU A--------- ---------- --------CA -U-GG-AUAC C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGC AAA------- ---------- ---------- 361 --A-CCCC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UCCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCC--U-UGG U---GAUUCA --UA-AUAAC UUAACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-GG- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----AUU--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -GC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-CAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CCGU--- -CC-U---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------AG UA-CU-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-G------A UGG------- GC-CU----- ----UUCUUU CUG-G-GGAA 2821 UC-----CC- -AU-GGCC-- -UUCACU--- GGC-U--GU- --GG------ GG--GGA-AC 2881 C--AG---GA --CUUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UU------ ---------- ---------- ---------- ---UGCUC-- --GGAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUC---- ---------G 3421 GGGGCG-UC- AG--UA-U-U CAGC-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUCUG-C 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--CG A---UUCG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AGGGA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG G----U---- -GU-U----- ---------- --UUUAUGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CA-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A AA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUC-U- UUUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UC-G G-CCC--UUA A-AUA-G-CC C----GGUC- -----CG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GC-- 5521 --GGC-C--- GCU--G-G-- ------CU-U C-UU-AGGGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UACGUGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CAGGG-C-C 5761 AG-CG-AG-U ACAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAGA-- GG-CC---UG --GGU--AAU --CU-UGUUA -AA-CC-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-ACG-AG-U CAUCAG--CU C-GUGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-CUU -CGGA----- --CUG-G-CU CAGG---GG- --GGUUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-ACCG- ----C----- 6241 ---------- --------CC -AG--A-G-C C-GG---AAA G---UUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------G -UGAA-CCU- GCAGAAGGAU C~~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Slrt.scler 7872 bp RNA RNA 02-JUL-1998 DEFINITION Sclerotinia sclerotiorum MUCL 11553 (disco ascomycete fungus). REFERENCE 1 AUTHORS Wilmotte,A.M., Van de Peer,Y., Goris,A., Chapelle,S., De Baere,R., Nelissen,B., Neefs,J.M., Hennebert,G.L. and De Wachter,R. TITLE Evolutionary relationships among higher fungi inferred by small ribosomal subunit RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 16, 436-444 (1993) COMMENT Corresponding GenBank entry: X69850|g530265 common_name= disco ascomycete fungus BASE COUNT 577 a 430 c 533 g 565 u 5767 others ORIGIN 1 .........U ACCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAACU--- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UNGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-CCUC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GG-C----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCC--C-UGG U---GAUUCA --UA-AUAAC UUAACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGNA U-UAGGGUUC -UAUU-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACUACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -UU-G---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------UG CA-CU-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-A------C CGG------- GU-CU----- ----UUCCUU CUG-G-GGAG 2821 CC-----GC- -AU-GCCC-- -UUCACU--- GGG-U--GU- --GUC----- GG--GGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUC---- ---------G 3421 GGGGCA-UC- AG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AGUGA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG A----U---- -GU-UA---- ---------- --UCUUUU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-CUCG-- ----GCA--- --------CC U-CAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-AG G-CA--CCA- 4021 CC-A-GGCGU ACAAGCAGUA ACUCUGCGCC UAAAAGCAGC UCGUAAGAGU UGGUGGUAGU 4081 CUUAGGAUAU GCUAGUUGGA AAUCAGCUAU ACCUUCAAAC UGCGGGGAAC UCCUUAAAAA 4141 CUCAACUACU AAACCUCAAU UGAAAGAUUG UGGUGGCCAG CUAAAUCUGG GUAAAGUAAU 4201 AACGUUGAGA ACUUGGACAA UCCGCAUCCA AUCCUCUAAG GUUCCAAACU AUGAGGAAGG 4261 UUCAGAGACU AAAUGUAGGU AGGUAGCAUU GCUACUUAAG AUAUAGUCCA UCUCGAGAUU 4321 AACGUCUCGA GAAUAAUAAU G--------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---- -AACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GGCU- -----AG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCU- 5521 --GGU-C--- GCU--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-C-G -CACGCGCGC UA-CACU-GA -CAGAG-C-C 5761 AA-CG-AG-U UUUUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GA 5881 CC--GAAA-- GG-UC---UG --GGU--AAU --CU-UGUUA -AA-CU-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGUAC CC-UGCCUUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-A-AG- 6121 UGAGGC-UUU -CGGA----- --CUG-C-CU UAGG---GA- --GGGUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CA-CCCA- ----C----- 6241 ---------- --------CC -AG--A-G-G C-GG---AAA G---UUAU-C CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plsp.herbm 7872 bp RNA RNA 02-JUL-1998 DEFINITION Pleospora herbarum DAOM 150679 (leaf spot of legumes bitunicate ascomycete fungus). REFERENCE 1 AUTHORS Morales,V.M., Jasalavich,C.A., Pelcher,L.E., Petrie,G.A. and Taylor,J.L. TITLE Phylogenetic relationship among several Leptosphaeria species based on their ribosomal DNA sequences JOURNAL Mycol. Res. 99, 593-603 (1995) REFERENCE 2 AUTHORS Jasalavich,C.A., Morales,V.M., Pelcher,L.E. and Seguin-Swartz,G. TITLE Comparison of nuclear ribosomal DNA sequences from Alternaria species pathogenic to crucifers JOURNAL Mycol. Res. 99, 604-614 (1995) COMMENT Corresponding GenBank entry: U05201|g451837 tissue_type= mycelium dev_stage= mycelia, young common_name= leaf spot of legumes bitunicate ascomycete fungus specific_host= Trifolium pratense BASE COUNT 463 a 373 c 466 g 478 u 6092 others ORIGIN 1 .......... .......... .......... ....G-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUU--- 121 AUA------- ----CCGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 AUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG AAA------- ---------- ---------- 361 --A-UCCC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-AU- ---GUGU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UUU--U-UGG U---GAUUCA --UG-AUAAC UUUACGGA-- -------UC- G----CA--- 1021 -UA----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-CGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-AG -GUAU-UGG- CUU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAACC UCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAACU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CU-G---G- 2521 CGGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------UG CA-CU-CG-- -UC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- G-G------C CGG------- GC-CU----- -----UCCUU CUG-A-AGAA 2821 CC-----UC- -AU-GCCC-- -UUCACU--- GGG-C--GU- --GUU----- GG--GGA-AU 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UU------ ---------- ---------- ---------- ---UGCUC-- --GAAUAC-G 3001 U-UAGCA-UG G-AAUAAU-A AAAU-AGGG- CG-U-GCGU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG AGAC---GCC G-CAA-UGAU UAACA-GGAA C-AGUC---- ---------G 3421 GGGGCA-UC- AG--UA-U-U CAGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AGUGA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CG-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG A----U---- -GU-U----- ---------- --CUUUUUCU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAU-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG U-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AU-G AA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- UUCA-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUCG -U-GGG-GUG A-CUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAG-C-G AGACC-UU-A C-UCU-GCUA A-AUA-G-CC --A--GGCU- -----AG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCU- 5521 --GGU-C--G CC---G-G-- ------CU-U C-UU-AGAGA -GA---CUA- U-CA-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GU-U G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CAGAG-C-C 5761 AA-CG-AG-U UCUUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAAA-- GG-UC---UG --GGU--AAU --CU-UGUUA -AA-CU-CU- GU-C-G-UG- 5941 CUG-GGGAU- AAA---GC-A U-UGCAAUU- A-UUGCUUU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GCG-UG-U CAUCAG--CA U-GCGU-U-G -AUUACGU-C CC-UGACCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-GUU -CGGA----- --CUG-G-CU CGGG---GA- --GGUUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-ACCA- ----C----- 6241 ---------- --------CC -CA--A-G-C C-GG---AAA G---UUCG-C CAAA-CUC-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAGG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Ophs.schen 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ophiostoma schenckii ATCC 14284 (symbiotic unitunicate ascomycete fungus). REFERENCE 1 AUTHORS Berbee,M.L. and Taylor,J.W. TITLE 18S ribosomal RNA gene sequence characters place the human pathogen Sporothrix schenckii in the genus Ophiostoma JOURNAL Exp. Mycol. in press (1992) COMMENT Former RDP Sids: Sptx.schen Corresponding GenBank entry: M85053|g175572 common_name= symbiotic unitunicate ascomycete fungus BASE COUNT 437 a 381 c 467 g 445 u 6142 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .GU-CUAAGU ---------- -------AUA AGCAAUU--- 121 AUA------- ----CAGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG AAA------- ---------- ---------- 361 --A-CCCC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUU AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCC--C-UGG U---GAUUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -ACGGCU-GG -GUCU-UGG- CCA----GCC A-UGGU-GA- 1201 CAA-CGGG-U -AACGGAGGG U-UAGGGCUC -GACC-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACUACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAUUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CU-G---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------UG CA-CU-GG-- -UC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- G-G------C CGG------- GU-CU----- ----UUCCCU CUG-G-GGAG 2821 CC-----GC- -AU-GCCC-- -UUCACU--- GGG-U--GU- --GUC----- GG--GGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCUC-- --GGAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UC- AG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AG-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGACG A----U---- -GU-UA---- ---------- --UUUUU--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-UUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- ACGAAA-GU- AC---AAG-U UUC-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-U-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CG-A-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- CGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-CUAAU C--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC --C--GCGU- -----UG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCA- 5521 --GCG-C--G CU---G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGU UA-CACU-GA -CAGAG-C-C 5761 AG-CG-AG-U UCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 CC--GAAA-- GG-CC---UG --GGU--AAU --CU-UGUGA -AA-CU-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUCCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAA--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-UUC -CGGA----- --CUG-G-CC CAGA---GG- --GGUGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CU-ACCC- ----U----- 6241 ---------- --------UC -CG--G-G-C C-GG---AAA G---UUAU-C CAAA-CUC-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUU- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGG...... .......... 7861 .......... .. // LOCUS Neur.crass 7872 bp RNA RNA 02-JUL-1998 DEFINITION Neurospora crassa (red bread mold; unitunicate ascomycete fungus). REFERENCE 1 AUTHORS Sogin,M.L., Miotto,K. and Miller,L. TITLE Primary structure of the Neurospora crassa small unit ribosomal RNA coding region JOURNAL Nucleic Acids Res. 14, 9540-9540 (1986) COMMENT Corresponding GenBank entry: X04971|g3080 common_name= red bread mold; unitunicate ascomycete fungus BASE COUNT 465 a 390 c 478 g 462 u 6077 others ORIGIN 1 .........U ACCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------UUA AGCAAUUAAA 121 ---------- ----CCGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-CCCC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUU AAAA------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UAA--C-UGG U---GAUUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -ACGGCU-GG -GUCU-UGG- CCA----GCC A-UGGU-GA- 1201 CAA-CGGG-U -AACGGAGGG U-UAGGGCUC -GACC-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACUACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GAGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UCGG--- -CC-----G- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------UG CA-CU-GA-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UG- G-G------U CGG------- GC-CU----- ----UUUUUC CUG-G-AGAA 2821 CC-----GC- -AU-GCCC-- -UUCACU--- GGG-U--GU- --GUC----- GG--GGA-AC 2881 C--AG---GA --CUUUUACC GUG-AACAAA U-CAGAUC-G CUC-A-AA-G -A-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- --GAAUGU-A 3001 C-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UC- AG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AG-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGAUU-A- GGG------- 3661 -----AU--- ----CGGACG G----U---- -GU-UA---- ---------- --UUUUU--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----CC --G-UUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAUAAA-UC- A----AAA-U GUU-UGGG-C -UCC-UGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CG-A-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- CGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GUAU- -----UG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCA- 5521 --GUA-C--- GCU--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CACAG-C-C 5761 AG-CG-AG-U ACU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UU-GG 5881 CC--GGAA-- GG-UC---CG --GGU--AAU --CU-UGUUA -AA-CU-GU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUCCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-UUC -CGGA----- --CUG-G-CC CAGG---GA- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-ACCA- ----C----- 6241 ---------- --------CC -AG--G-G-C C-GG---AAA G---CUAU-C CAAA-CUC-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUU- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCA- GCGGAGG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Hycr.lutea 7872 bp RNA RNA 02-JUL-1998 DEFINITION Hypocrea lutea (unitunicate ascomycete fungus). REFERENCE 1 AUTHORS Yoshimura,A. and Sugiyama,J. TITLE JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: D14407|g684976 common_name= unitunicate ascomycete fungus BASE COUNT 462 a 384 c 474 g 452 u 6100 others ORIGIN 1 .......... .......... .......... ....G-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUU--- 121 AUA------- ----CCGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-UA -UAAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 AUACUUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-UCCC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-UU- ---GUAU-UU -AUUA-GAUU AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCCC UCG------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--C-UGG U---GAAUCA --UG-AUAAC UAGUCGAA-- -------UC- G----AC--- 1021 -AG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGC -UCA-UUC-A AAUUU-CUUC 1141 --CCU-AUC- AA-CUUUCG- -AUGUUU-GG -GUAU-UGG- CCA----AAC A-UGGU-GG- 1201 CAA-CGGG-U -AACGGAGGG U-UAGGGCUC -GACC-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACUACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GUGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CU-G---G- 2521 C-GGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC---CUCAC C-----GCG- 2641 ---------- --------UG CA-CU-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-G------C CGG------- GC-CU----- ----UUCCCU CUG-C-GGAA 2821 CC-----CC- -AU-GCCC-- -UUCACU--- GGG-U--GU- --GGC----- GG--GGA-AA 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AG-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UC- AG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--CG A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-GC-AG-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGACG A----U---- -GU-UA---- ---------- --CAUUUU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----GC --G-UUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U GCU-UGGG-C -UCC-AGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-A-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GUAU- -----UG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCA- 5521 --GUA-C--- GCC--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -UCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGGAG-C-C 5761 AG-CG-AG-U ACU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UU-GG 5881 CC--GGAA-- GG-CC---UG --GGU--AAU --CU-UGUUA -AA-CU-CC- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUCCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-C-AG- 6121 UGAGGC-GUC -CGGA----- --CUG-G-CC CAGA---GA- --GGUGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CU-ACCA- ----C----- 6241 ---------- --------UC -AG--G-G-C C-GG---AAA G---CUCU-C CAAA-CUC-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUU- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plct.nigre 7872 bp RNA RNA 02-JUL-1998 DEFINITION Plectania nigrella (disco ascomycete fungus). REFERENCE 1 AUTHORS Landvik,S., Eriksson,O.E., Gargas,A. and Gustafsson,P. TITLE Relationships of the genus Neolecta (Neolectales ordo nov., Ascomycotina) inferred from 18S rDNA sequences JOURNAL Sys. Ascomycetum 11, 107-118 (1993) COMMENT Corresponding GenBank entry: Z27408|g425218 (bases 1 to 717) common_name= disco ascomycete fungus BASE COUNT 452 a 363 c 451 g 451 u 6155 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... ....AUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUCU-- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-UCCC-- -----GACC- ---------- ---------- ---------- -----CCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-CAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGC------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCC--U-UGG U---GAUUCA --UG-AUAAC UUAACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -UAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -UGAU----- -AC-AG---- 1861 -GGCC----- --UUUC---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AAUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CU-G---G- 2521 C-GGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- AC---CUCAC C-----GUG- 2641 ---------- --------AG AA-CU-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-G------C CGG------- GU-CU----- ----UUCCUU CUG-G-CUAA 2821 CC-----UC- -AU-GCCC-- -UUCACU--- GGG-U--GU- --GUU----- GG--GGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-UU------ ---------- ---------- ---------- ---UGCUC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUC---- ---------G 3421 GGGGCA-UC- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AG-GA A-CGAAA--G UUGAGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUC- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG A----U---- -GU-A----- ---------- --CUUUUCGU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-U-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUC-A- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GGCC- -----CG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U-----GCG- 5521 --AGU-C--- GCU--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GA--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------U UUCAA-GA-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CAGAG-C-C 5761 AA-CG-AG-U ACAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GGAA-- GG-UC---UG --GGU--AAU --CU-UGUUA -AA-CU-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGC-CUU -CGGA----- --CUG-G-CC CGAG---GA- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-ACCA- ----C----- 6241 ---------- --------CU -UG--G---C C-GG---AAA G---UUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- ACU-AAAAG- UCGUAA--C- AAGG-U.... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Cand.albic 7872 bp RNA RNA 02-JUL-1998 DEFINITION Candida albicans MUCL 29800 (yeast which causes thrush, diaper rash & vaginitis). REFERENCE 1 AUTHORS Hendriks,L., Goris,A., Neefs,J., Van de Peer,Y., Hennerbert,G. and De Wachter,R. TITLE The nucleotide sequence of the small ribosomal subunit RNA of the yeast Candida albicans and the evolutionary position of the Fungi among the eukaryotes JOURNAL Syst. Appl. Microbiol. 12, 223-229 (1989) COMMENT Corresponding GenBank entry: X53497|g2507 common_name= yeast which causes thrush, diaper rash & vaginitis BASE COUNT 484 a 346 c 461 g 497 u 6084 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUUU-- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUU AAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----GUUU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AAAA------ --AUCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGC------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--U-UGA U---GAUUCA --UA-AUAAC UUUUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCC- ---GAUUCA- 1801 ---GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CGAU----- -AC-AG---- 1861 -GGCCC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUGU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAA-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUGG--- -CU-G---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CA- UC---UUUUU C-----GAUG 2641 ---------- --------CG UA-CU-GG-- -A-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- A-G------C CGA------- GC-CU----- ----UUCCUU CUG-G--UAG 2821 CC-------- -A-------- --UUUA---- --------U- ---------- GG--CGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UU------ ---------- ---------- ---------- ---UGCUC-- --GAAUAU-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CGUU-AUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUG--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---AUC G-UAA-UGAU UAAUA-GGGA C-GGUC---- ---------G 3421 GGGGUA-UC- AG--UA-U-U CAGA-U-G-U C-GAAAG-GU GAAA-UUC-U UGGAUUUA-C 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUA-C C-AAG----- ---GACGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGUUG U----U---- -GU-U----- ---------- --CUUUUAUU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----GC --A-AUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-ACUA A-AUA-G-UG C----UGCU- -----AG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------AUU U-----GCU- 5521 --GGU-A--U AGU--C-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCCAA-GU-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-ACG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGGAG-C-C 5761 AG-CG-AG-U AUAA------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GG 5881 CC--GAGA-- GG-UC---UG --GGA--AAU --CU-UGUGA -AA-CU-CC- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGUAAUU- G-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGC-CUC -CGGA----- --UUG-G-UU UAGG---AA- --AGGGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CU-CCAU- ----U----- 6241 ---------- --------CU -GG--A-A-C C-GA---GAA G---CUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Sacc.cerev 7872 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomyces cerevisiae (baker's yeast; yeast; brewer's yeast; lager beer yeast). REFERENCE 1 AUTHORS Rubtsov,P.M., Musakhanov,M.M., Zakharyev,V.M., Krayev,A.S., Skryabin,K.G. and Bayev,A.A. TITLE The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae JOURNAL Nucleic Acids Res. 8 (23), 5779-5794 (1980) REFERENCE 2 AUTHORS James,S.A., Collins,M.D. and Roberts,I.N. TITLE Genetic interrelationship among species of the genus Zygosaccharomyces as revealed by small- small-subunit rRNA gene sequences JOURNAL Yeast 10 (7), 871-881 (1994) REFERENCE 3 AUTHORS Mankin,A.S., Skryabin,K.G. and Rubtsov,P.M. TITLE Identification of ten additional nucleotides in the primary structure of yeast 18S rRNA JOURNAL Gene 44 (1), 143-145 (1986) COMMENT Corresponding GenBank entry: J01353|g172403 common_name= baker's yeast; yeast; brewer's yeast; lager beer yeast BASE COUNT 480 a 348 c 459 g 511 u 6074 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUUU-- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUUCCUUUAC UA-------- ---------- --------CA -U-GGUAUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUU AAA------- ---------- ---------- 361 --A-UCUC-- -----GACC- ---------- ---------- ---------- -----CUUU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GAG-AU- ---GUAU-UU -AUUA-GAUA AAAA------ --AUCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GAC------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--U-UGA U---GAUUCA --UA-AUAAC UUUUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCU- ---AAUUC-- 1801 ---AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CGAU----- -AC-AG---- 1861 -GGCCC---- --AUUC---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUGU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CCGG--- -UU-G---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GA----UUUU U-----UCG- 2641 ---------- --------UG UA-CU-GG-- -AUUU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- A-A------C GGG------- GC-CU----- ----UUCCUU CUG-G-CUAA 2821 CC-----UU- -GA-GUC--- -CUUGU---- -GG-C--UC- --UU------ GG-CGAA--C 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-UAU----- ---------- ---------- ---------- ---UGCUC-- --GAAUAU-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---AUC G-UAA-UGAU UAAUA-GGGA C-GGUC---- ---------G 3421 GGGGCA-UC- GG--UA-U-U CAAU-U-G-U C---GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GACGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUCU-G-G 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- G--------- 3661 -----AU--- ----CGGGUG G----U---- -GU-U----- ---------- --UUUUUAAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --A-CUCG-- ----GUA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CU-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- -U-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-A-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GUUUC- UCA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-ACUA A-AUA-G-UG G-U---GCU- -----AG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------AUU U-----GCU- 5521 --GGU----U AUC--C-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCAA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AGAACG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGGAG-C-C 5761 AG-CG-AG-U CUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAGA-- GG-UC---UU --GGU--AAU --CU-UGUGA -AA-CU-CC- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGUAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- G-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGC-CUC -AGGA----- --UCU-G-CU UAGA---GA- --AGGGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CU-CCAU- ----C----- 6241 ---------- --------UC -AG--A-G-C G-GA---GAA U---UUGG-A CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- ACU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Tphr.dfrmn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Taphrina deformans ATCC 34556 (peach leaf curl ascomycete fungus). REFERENCE 1 AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Dating the evolutionary radiations of the true fungi JOURNAL Can. J. Bot. in press (1993) COMMENT Corresponding GenBank entry: U00971|g392951 dev_stage= mycelia, young common_name= peach leaf curl ascomycete fungus specific_host= Prunus sp. BASE COUNT 461 a 344 c 453 g 478 u 6136 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... ....AUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUUU-- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUAAUU A--------- ---------- --------CU -U-GG-AUAC C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGC------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCC--U-UGG U---GAUUCA --UA-AUAAC UUUACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UU- 1201 UGA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGCUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-CC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUGG--- -UU-G---A- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UAAC ------GGUG 2641 ---------- --------UG CA-CU-GG-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UU- G-A------C CGA------- GG-CU----- ----UUCCUU CUG-G-CUAG 2821 CC----UGU- -AU-GGUA-- -UUAAUU--- UAU-U--GU- --GCA----- GG--GGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCUC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGACA-UU- AG--UA-U-U GAGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 UC-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-U C-AAG----- ---GAUGUUU 3541 U-C--AU-UA G-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG A----U---- -GU-U----- ---------- --CUUUUCUU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-CCCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A AA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UUUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC C----GACU- -----AG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U-----GCU- 5521 --GGU-C--- GCU--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUAAA-GC-C A-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGGAG-C-C 5761 AG-CG-AG-U UCAUU----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 CC--GGAA-- GG-UC---UG --GGU--AAU --CU-UGUGA -AA-CU-CC- GU-C-G-UG- 5941 AUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGAC-CUC -CGGA----- --UUG-U-CG UUGG---GC- --UGCUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GCGG- ----C----- 6241 ---------- --------CC -UG--U-G-A U-GA---AAA G---UUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU. .......... .......... 7861 .......... .. // LOCUS Szsa.pombe 7872 bp RNA RNA 02-JUL-1998 DEFINITION Schizosaccharomyces pombe (fission yeast). REFERENCE 1 AUTHORS Bruns,T.D., Vilgalys,R., Barns,S.M., Gonzalez,D., Hibbett,D.S., Lane,D.J., Simon,L., Stickel,S., Szaro,T.M., Weisburg,W.G. and Sogin,M.L. TITLE Evolutionary relationships within the Fungi: analyses of nuclear small subunit rRNA sequences JOURNAL Mol. Phylogenet. Evol. 1, 231-241 (1992) COMMENT Corresponding GenBank entry: X54866|g5075 common_name= fission yeast BASE COUNT 500 a 356 c 472 g 514 u 6030 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UA-- 241 GUACCUCAAC UA-------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----UUUUU 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -------GCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGC------ 901 ---------- ---------- ---------- ---------- ---------- --------UU 961 UUU--U-UGG U---GAGUCA --UA-AUAAC UUUUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UU- 1201 UAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -GC-AG---- 1861 -GGCCC---- --UUUC---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUGU-AAAUA CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 U-G--A-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -UC-G---A- 2521 CUGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCAA ------GGCG 2641 ---------- ------UGUU UA-CU-GG-- -UCA------ ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- G-A------C CGGGGU---- CG-UU----- ----AACCUU CUG-G-CAAA 2821 CU---ACUC- -AU-GUUC-- -UUUAUU--- GAG-C--GU- --GGU----- AG--GGA-AC 2881 C--AG---GA --CUUUUACC UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AGUUU--- ---------- ---------- ---------- ---UGCUC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AAAU-AGGA- CG-U-GUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCA A----U---- -GU-U----- ---------- --UCAUUUAU 3721 C--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UU --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CA-AUGGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GC-UUAAU U--GCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CU G----GAUC- -----AG-CC 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------UU U---UGGCU- 5521 --GAU-C--- AUU--A-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUAAA-GC-C A-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGGAG-C-C 5761 AA-CG-AG-U UGAAAAAAAU CUUUUGAUUU UUUA------ ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 CC--GGAA-- GG-UC---UG --GGU--AAU --CU-UGUUA -AA-CU-CC- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGC-CUC -UGGA----- --UUG-G-CU UGUU---UC- --UGCUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GCGG- ----A----- 6241 ---------- --------AA CAU--U-G-C C-GA---GAA G---UUGG-A CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Crcc.nfrm3 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cryptococcus neoformans MUCL 30453 (mitosporic basidiomycete fungus). REFERENCE 1 AUTHORS Van de Peer,Y., Hendriks,L., Goris,A., Neefs,A., Vancanneyet,M., Kersters,K., Berny,J.F. and De Wachter,R. TITLE Evolution of Basidiomycetous yeasts as deduced from small ribosomal subunit RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 250-258 (1992) COMMENT Corresponding GenBank entry: X60183|g2616 common_name= mitosporic basidiomycete fungus BASE COUNT 469 a 373 c 484 g 471 u 6075 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACGAAUUC- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUAUCUUGCU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG AAAA------ ---------- ---------- 361 --G-CCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GGGU UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--A-UGG U---GAAUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----G-CGG- -C-GA-UGCU -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-AU- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCUC---- --UUUU---G GG-C-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 C-A--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CG-A---G- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CU- CC----UCAC ------GGAG 2641 ---------- --------GU CA-CU-GU-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CU- U-G------C UGG------- AC-CU----- ----UACCUC CUG-G-UGGU 2821 CC----UGU- -AU-GCUC-- -UUUACU--- GGG-U--GU- --GCA----- GG--GGA-AC 2881 C--AG---GA --AUUUUACC UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AU------ ---------- ---------- ---------- ---CGCCC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GAUC---GCC G-UAA-UGAU UAAUA-GGGA C-GGUC---- ---------G 3421 GGGGCA-UU- GG--UA-U-U CCGU-U-G-C U-A-GAG-GU GAAA-UUC-U UAGAUUGA-C 3481 GG-A-AG-AC CAAC-AACUG C-GAAA--GC ----UUUG-C C-AAG----- ---GACGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAG--G UUAGGG-GAU -CAAA-AACG --AUUA-G-A 3601 UAC-C-GU-- UGUAGUCUU- A--AC-AG-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGCCC A----C---- -GU-CA---- ---------- --AUCUC--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UG --G-GUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CC-AU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UC A----GGCC- -----GG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCU- 5521 --GGU-C--G UUU--G-A-- ------CU-U C-UU-AGAGG -GA---CUG- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GU-C G-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CUGAG-C-C 5761 AG-CG-AG-U CUUACC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-G- 5881 CC--GAGA-- G--CC---UG --GGU--AAU --CU-UGUGA -AA-CU-CA- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUACC- 6001 U-AGUA-A-G C-GUG-AG-U CACCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGAU-CUC -CGGA----- --UUG-G-CG UUGG---GG- --AGCCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-AC-C- ----C----- 6241 ---------- --------CU --U--G-G-C U-GA---GAA G---CUGA-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAGUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Trml.globs 7872 bp RNA RNA 02-JUL-1998 DEFINITION Tremella globospora str. Ken Wells, UCD (jelly fungus; basidiomycete fungus). REFERENCE 1 AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Dating the evolutionary radiations of the true fungi JOURNAL Can. J. Bot. in press (1993) COMMENT Corresponding GenBank entry: U00976|g392956 dev_stage= mycelium common_name= jelly fungus; basidiomycete fungus isolate_name= Ken Wells, UCD BASE COUNT 444 a 373 c 483 g 439 u 6133 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... ...CAUGC-A UGU-CUAAGU ---------- -------AUA AACGAAUUC- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-CG-- 241 GUACCUUGCU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG AAAA------ ---------- ---------- 361 --G-CCCC-- -----GACU- ---------- ---------- ---------- -----UCC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------GCGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UGU--U-UGG U---GAUUCA --UG-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGCU -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-AU- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCUC---- --UAUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 C-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CG-G---G- 2521 ACGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UUAC ------GGUG 2641 ---------- --------UG CA-CU-GU-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CC- G-G------C CGG------- GC-CU----- ----UACCUC UUG-G-UGAA 2821 GC----CGU- -GU-GGCC-- -CUCACG--- GGU-U--GC- --GCG----- GU--GGA-AC 2881 C--AG---GA --ACUUUACC UUG-AGAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AA------ ---------- ---------- ---------- ---CGCCC-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GAUC---GCC G-UAA-UGAU CAAUG-GGGA C-GGUC---- ---------G 3421 GGGGCA-UU- GG--UA-U-U CCGU-U-G-C U-A-GAG-GU GAAA-UUC-U UAGAUUUA-C 3481 GG-A-AG-AC CAAC-AUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GACGUUC 3541 U-C--GU-CG A-UC-AA-GA A-CGAAG--G UUAGGG-GAU -CAAA-AACG --AUUA-G-A 3601 UAC-C-GU-- UGUAGUCUU- A--AC-AG-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCC A----C---- -GU-UA---- ---------- --UUUUC--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UG --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC A----GGCC- -----GG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GCU- 5521 --GGU-C--- GUC--G-G-- ------CU-U C-UU-AGAGG -GA---CUG- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUCUA-GU-C G-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CUGAG-C-C 5761 AG-CG-AG-U UCACC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GC 5881 CC--GAGA-- GG-GU---UG --GGU--AAU --CU-UGUGA -AA-CU-CA- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUACC- 6001 U-AGUA-A-G C-GUG-AG-U CACCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CUGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGAU-CUC -CGGA----- --UUG-G-CG UUGG---GG- --AGCCG--- ---------- 6181 ---------- ---------- ---------- ----GCGA-- --CG-GCAC- ----C----- 6241 ---------- --------CC -UU--G-G-C C-GA---GAA G---CUGA-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCAUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU. .......... .......... 7861 .......... .. // LOCUS Gymo.niten 7872 bp RNA RNA 02-JUL-1998 DEFINITION Gymnoconia nitens (basidiomycete fungus; orange rust of Rubus). REFERENCE 1 AUTHORS Swann,E.C. and Taylor,J.W. TITLE Phylogenetic perspectives on basidiomycete systematics: evidence from the 18S rRNA gene JOURNAL Can. J. Bot. 73, S862-S868 (1995) COMMENT Corresponding GenBank entry: U41565|g1173913 common_name= basidiomycete fungus; orange rust of Rubus BASE COUNT 484 a 335 c 440 g 500 u 6113 others ORIGIN 1 .......... .......... .......... .........G UCCACUUUCU UUGU-CUCCA 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUUUU--- 121 AUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 AUACCUUACU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG AAAA------ ---------- ---------- 361 --G-CCCC-- -----AACC- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ----GUCCCU UUU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -AGGGUC--- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UCU--C-UGG U---GAUUCA --UA-AUAAC UUUUCGAA-- -------UC- A----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -U-GA-UGCU -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GA- 1201 CAA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGAG-G- -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-CCUCAAA- 1741 UC-UAAGGAU -UGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCC- ---AACAC-- 1801 ---GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GU-AU---- 1861 -GGCUC---- --UUUU---G GG-U-C---- -U--UA-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GACGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 C-G--G-CC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UCUG--- -GG-A---G- 2521 UUGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UUUU ------GGUG 2641 ---------- --------UG UA-CU-GA-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UU- G-U------U GGA------- GG-CU----- ----UACCUC UUG-G-UGAA 2821 CU----UCA- -AU-GCAC-- -UUUACU--- GGG-U--GU- --UGG----- AG--GGA-AC 2881 C--AG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UU------ ---------- ---------- ---------- ---UGCCU-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AAAU-AGGA- UG-U-GUGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CU UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GAUU---ACC G-UAA-UGAU UAAUA-GGGU C-AGUU---- ---------G 3421 GGGGCA-UU- UG--UA-U-U ACAU-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUGA-U 3481 GU-A-AG-AC AAAC-UACUG C-GAAA--GC A---UCUG-C C-AAG----- ---GAUGACU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAG--G UUAAGG-GUU -CAAA-AACG --AUCA-G-A 3601 UAC-C-GU-- UGUAGUCUU- A--AC-AG-U -AAACUAU-G -CCGACU-G- GGG------- 3661 -----AU--- ----CAGACA A----G---- -GA-U----- ---------- --UCAUAAU- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UU --G-UUUG-- ----GCA--- --------CC C-AAA----- 3901 ---------- GG-AAA-CC- UG---AAG-U U---UAGG-U -UCG-UGGGG -GAG-UACGG 3961 U-C-ACAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UUUUU- CUUGAUU-U- UGUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-C U-CCU-GCUA A-AUA-G-UC C----AGCU- -----GG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UAC G-----GCU- 5521 --GUU-G--- CU---G-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CA-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GU-U G-A-UGGAAG -UUGGAGGC- AAUAACAGG- UCUG-UU-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CCAAG-C-C 5761 AG-CG-AG-U AUAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-AU 5881 CU--GAAA-- GG-AU---UG --GGU--AAU --CU-UGUGA -AA-CU-UG- GU-C-G-UG- 5941 AUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUACC- 6001 U-AGUA-A-G C-GUA-UG-U CAUCAG--CA U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGGU-G A-CU-U-AG- 6121 UGAGGC-GUU -CGGA----- --GAG-C-CU AUAA---AG- --AGCUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CA--CAC- ----U----- 6241 ---------- --------UU -AC--U-G-G C-UC---AAA G---UUCU-A CAAA-CUU-G 6301 G-U-CG-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG .......... .......... .......... 7861 .......... .. // LOCUS Usti.mayds 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ustilago maydis MUCL 30488 (covered smut of maize basidiomycete fungus). REFERENCE 1 AUTHORS De Wachter,R., Neefs,J.M., Goris,A. and Van de Peer,Y. TITLE The gene coding for small ribosomal subunit RNA in the basidiomycete Ustilago maydis contains a group I intron JOURNAL Nucleic Acids Res. 20, 1251-1257 (1992) COMMENT Corresponding GenBank entry: X62396|g5232 MUCL 30488 = CBS 445.63 common_name= covered smut of maize basidiomycete fungus BASE COUNT 603 a 453 c 582 g 571 u 5663 others ORIGIN 1 .........U ACCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA CGCAAAUU-- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 UUUCUUGCUA ---------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU AAAAA----- ---------- ---------- 361 --G-CCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAA------- --ACCA--UC ---------- 601 ---------- ---------- ---------- ---------- -------CUC CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GAG------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -UU----UGG U---GAUUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGCU -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUGUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UG- 1201 CAA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-AG---- 1861 -GGCCC---- --UUUU---G GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACGA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAGUU 2221 U-G--G-UC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UCGG--- -AC-G---C- 2521 UGGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------U- GC---UUAAU U-----GCA- 2641 ---------- --------UG UA-CU-UG-- -AC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- G-U------C CGA------- GA-CU----- ----UCCUUC UUG-G-UGAA 2821 C------GG- -CC-GCC--- --CUCG---- -GG-U--GG- --UCC----- GG----A-AC 2881 C--AG---GA --CUAUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-AUA----- ---------- ---------- ---------- ---GGCCC-- --GAAUAU-A 3001 U-UAGCA-UG G-AAUAAC-A GAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG AACU---GCC G-UAA-UGAU UAAAA-GGGA C-AGCC---- ---------G 3421 GGGGCA-UU- AG--UA-U-U UGCA-C-G-C U-A-GAG-GU GAAA-UUC-U UGGAUUGU-G 3481 CA-A-AG-AC UUCC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAG--G UUAGGG-UAU -CGAA-AACG --AUUA-G-A 3601 UAC-C-GU-- UGUAGUCUU- A--AC-AG-U -AAACUAU-G -CCGACU-C- CGA------- 3661 -----AU--- ----CGGUCG A----U---- -GC-U----- ---------- --CAUUUCAC 3721 U--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----UC --G-AUCG-- ----GCG--- --------CG G-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-U-GG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU AAACUUUCAC AGCUAGCCGC AGUGUCUCUG CUCCAAAAAG CCGCCUGAAA 4081 GGGUCGGUGC GUGUUCCUAU UUGAAAUAAU GGCUAGUCUG AUGCGAAUCA GGCGACACAU 4141 CCAAAUUGCG GGAAACUCCU UAGAGCUCUA GCUACCGCGG CCCCAUCGUG AGAUUAGGGU 4201 GCAGCACCAG GUUAAUGGCC UCGGGUAUGG UAAAAACGCU AGAGAUUGGA CAAUCCGCAG 4261 CCAAGCCUCU UCGCAAGAAG UGGAAGGUUC AGAGACUAAA UGGUUGUGGG UGGCAGACGG 4321 UUUCGCGAAU GUAUGAAUCA AUCAUAAACA CGUGAAGGAA GUCUGCUGCU UAAGAUAUAG 4381 UCCGAGCCAC AGGGAAACCU UGGGAAUUUU GGCAACAAAC CGAAACAGAU AAAUAACAUC 4441 G--------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -GGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUG GC--GCUUU- CAUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-G A-CCU-GCUA A-AUA-G-AC G----GGUU- -----GA-CA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------UU U----UGUU- 5521 --GGC-CCCU UAU--G-U-- ------CU-U C-UU-AGAGG -GA---CAA- U-CG-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------C GUCUA-GG-U G-A-UGGAGG -CAAAAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-CGGG-CUG -CACGCGCGC UA-CACU-GA -CAGAG-A-C 5761 AA-CG-AG-U GGAGC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UU-GU 5881 CC--GAAA-- UG-AC---UG --GGU--AAA --CU-UGUGA -AA-CU-UU- GU-C-G-UG- 5941 CUG-GGGAU- GGA---GC-U U-UGUAAUU- U-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGA-CUU -GGGA----- --GAG-UACA UCGG---GG- --AGCCA--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --UG-GCAC- ----C----- 6241 ---------- --------CU -GA--C-G-G C-UC---AAA C---UCUU-A CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAUG-GA UCAUUU~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Agrc.bispo 7872 bp RNA RNA 02-JUL-1998 DEFINITION Agaricus bisporus (basidiomycete fungus; cultivated mushroom). REFERENCE 1 AUTHORS Hinkle,G., Wetterer,J.K., Schultz,T.R. and Sogin,M.L. TITLE Phylogeny of the attine ant fungi based on analysis of small subunit ribosomal RNA gene sequences JOURNAL Science 266, 1695-1697 (1994) COMMENT Corresponding GenBank entry: L36658|g602966 common_name= basidiomycete fungus; cultivated mushroom BASE COUNT 471 a 372 c 488 g 483 u 6058 others ORIGIN 1 .........A ACCUGG--UG A--U-CC-UG CC-AG-UAGG U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACAAAUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 AUACCUUGCU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA UCAA------ ---------- ---------- 361 --G-CCCC-- -----GACU- ---------- ---------- ---------- -----UCC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-GU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ------GCGG UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGC----- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 CCC--U-UGG U---GAUUCA --UA-AUAAC UUCUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGCU -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UU- 1201 CAA-CGGG-U -AACGGGGAA U-AAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AU-AG---- 1861 -GGCUC---- --UUUC---G GG-U-C---- -U--UA-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CCCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 C-A--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -UG-G---G- 2521 GUGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CU----UAAC ------GGCG 2641 ---------- --------UG UA-CU-GC-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- U-G------C UGG------- GU-CU----- ----UACCUC UUG-G-UGAG 2821 CC----GGC- -GU-GGCC-- -UUCACU--- GGU-U--GC- --GUC----- GG--GGA-AC 2881 C--AG---GA --CUUUUACC UUG-AGAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCCU-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AAAU-AGGA- CG-U-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG AGUC---GCC G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- GG--UA-U-U GAGU-C-G-C U-A-GAG-GU GAAA-UUC-U UGGAUUGA-C 3481 UC-A-AG-AC CGAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GG A-CGAAG--G UUAGGG-GAU -CGAA-AACG --AUCA-G-A 3601 UAC-C-GU-- UGUAGUCUU- A--AC-AG-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGGCG A----C---- -CU-CA---- ---------- --AAUUUGA- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GUG----UC --G-CUCG-- ----GCA--- --------CC U-UAC----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-A-CUAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CAUGAUU-U- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CC --A--GGCC- -----GG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U-----GCU- 5521 --GGU-C--G CA---G-G-- ------CU-U C-UU-AGAGG -GA---CUG- U-CA-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GC-U G-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-UCG -CACGCGCGC UA-CACU-GA -CAGAG-C-C 5761 AG-CG-AG-U UUUUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GGAA-- GG-UC---UG --GGU--AAU --CU-UGUGA -AA-CU-CU- GU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUACC- 6001 U-AGUA-A-G C-GUG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGU-CUC -CGGA----- --UUG-G-CU UUGG---GG- --AACCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GCGC- ----C----- 6241 ---------- --------CU -AU--U-G-C U-GA---GAA G---CUGA-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCY-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCCC~~~~~ ~~ // LOCUS Glom.intra 7872 bp RNA RNA 02-JUL-1998 DEFINITION Glomus intraradices DAOM 197198 (zygomycete fungus). REFERENCE 1 AUTHORS Simon,L., Lalonde,M. and Bruns,T.D. TITLE Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots JOURNAL Appl. Environ. Microbiol. 58, 291-295 (1992) COMMENT Corresponding GenBank entry: X58725|g2743 common_name= zygomycete fungus BASE COUNT 484 a 323 c 441 g 499 u 6125 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 ........A- -GCCAUGC-A UGU-CUAGU- ---------- -------AUA AUCGUU---- 121 AUAC------ ----AGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AA-UUUAU- -UUGA-UA-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA AA-------- ---------- ---------- 361 -AC-CUCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-GGU ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----AUCGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGAU---- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 CCC--U-UGG U---GAUUCA --UA-AUAAC UUUUCGAA-- -------UC- G----UA--- 1021 -UG----AC- ---------U UUAC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GUCGA- -C-GA-UGAA -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -AACGGGGUG U-UAGGGCAC -GACA-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAU -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GGUUC---- --UUUA---G GA-U-C---- -U--CG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC UCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----UUA--- -GU-A---GG 2521 UUGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -----CAUG- CC-----UCU ------GGUA 2641 UG-------- ---------- UA-CU-GG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ------UCUC A-C------U GA-------- UU-CC----- ----UCCUUC CUU-A-UGAA 2821 CC----GUA- -AU-GCCA-- -UUAAUU--- UGG-U--GU- --UGC----- GG--GGA-AU 2881 U--UG---GA --CUGUUACU UUG-AAAAAA U-UAGAGU-G UUU-A-AA-G -C-AAGC--- 2941 U-AA------ ---------- ---------- ---------- ---CGCUU-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-G AAAU-AGGA- CG-U-UCGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CU UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GAUU---GAC G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- AG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGAUG A----U---- -GU-UA---- ---------- --AUUUUUUA 3721 A--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --A-UUCG-- ----GCG--- ---------C U-UAC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGGGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAC-C-- GU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-CU --A--GGCC- -----UA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------AU U----GUUA- 5521 --GGU-C--G CC---A-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-AC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAG-U-C 5761 AU-CG-AG-U UCCUU----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-UA 5881 UC--GGAA-- GA-UA---UG --GGU--AAU --CU-UUUGA -AA-CU-UC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGCAACU- A-UUGCUCU- UG-AA-C-GA GGA-AUCCC- 6001 U-AGUA-A-G U-ACA-AG-U CACUAG--CU U-GUGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGGC-CUU -CGGAU---- --UGA-G-AU UCGG---AG- --A-CUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CA-G-AC- ----U----- 6241 ---------- --------CU -UG--G-U-U U-UG--AAAA G---UUGG-A CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GC -GAAA-CCU. .......... .......... 7861 .......... .. // LOCUS Mucr.racem 7872 bp RNA RNA 02-JUL-1998 DEFINITION Mucor racemosus (bread mold; zygomycete fungus). REFERENCE 1 AUTHORS Bruns,T.D., Vilgalys,R., Barns,S.M., Gonzalez,D., Hibbett,D.S., Lane,D.J., Simon,L., Stickel,S., Szaro,T.M., Weisburg,W.G. and Sogin,M.L. TITLE Evolutionary relationships within the Fungi: Analyses of nuclear small subunit rRNA sequences JOURNAL Mol. Phylogenet. Evol. 1, 231-241 (1992) COMMENT Corresponding GenBank entry: X54863|g2961 common_name= bread mold; zygomycete fungus BASE COUNT 520 a 340 c 447 g 524 u 6041 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AAUAAAUUU- 121 AUA------- ----UUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GA-UCUAC- -GUGA--C-- 241 AUAUUCUUUA CUA------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA AAAA------ ---------- ---------- 361 --A-CCCA-- -----AAC-- ---------- ---------- ---------- -----UUAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---UGG-GU- ---GCAC-UU -AUUA-GAUA AA-------- --GCCAA-C- ---------- 601 ---------- ---------- ---------- ---------- -----GCUGG GUAAAA---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCAGU---- 901 ---------- ---------- ---------- ---------- ---------- --------UU 961 CCC--U-UGG U---GAUUCA --UA-AUAAU UUAGCGGA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUAG- -C-GA-CAGU -CCA-CUC-G AUUUU-CUGC 1141 --CCU-AUCA UG-GUUGAG- -AUUGUA-AG -AUAG-AGG- CUU----ACA A-UGCC-UA- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-AG---- 1861 -GGCCU---- --UUA----A GG-U-C---- -U--UG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAACG UCCGUAGUCA ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 U-A--G-CC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUU---- -AG-A---U- 2521 GAGGUGGCC- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------UGG- UC---UUCAU U-----GAUC 2641 A--------- ---------- AG-CU-CG-- -CUUU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- A-U------C GAG------- GC-UU----- ----UUUUUC UGG-U-UAUG 2821 CU----AUG- -AA-UAGC-- --UUCG---- GUU-G--UU- --UAU----- AGUCUCU-AG 2881 C--CA---GA --UGAUUACC AUG-AGCAAA U-CAGAGU-G UUU-A-AA-G -C-AGGC--- 2941 U-UUCA---- ---------- ---------- ---------- ---AGCUU-- --GAAUGU-G 3001 U-UAGCA-UG G-AAUAAU-G AAAU-AUGA- C--U-UUAG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------CCC UA--UUU--C GUUGGUU-C- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AGG AACU---UAA G-UAA-UGAU GAAUA-GAAA C-GGUU---- ---------G 3421 GGGACA-UU- UG--UA-U-U UGGU-C-G-C U-A-GAG-GU GAAA-UUC-U UGGAUUGA-C 3481 CG-A-AG-AC AAAC-UACUG C-GAAA--GC A---UUUGAU C-CAG----- ---GACGUUU 3541 U-C--AU-UG A-UC-AA-GG U-CUAAA--G UUAAGG-GAU -CGAA-GACG --AUUA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-C -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----UGGGCU -----U---- -GU-U----- ---------- --UAUUAU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UA --G-CUCA-- ----GCA--- --------UC U-UA------ 3901 ---------- GCGAAA-GU- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 GAC-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAAA GC--UCUUU- CUAGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUCG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-A U-UCU-GCUA A-AUA-G-GC A----GGUC- -----AA-CU 5221 UU-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --------UU AGUUGAUUAA U--AGAUUU- 5521 --AUC-U--A UCU--G-G-- ------CU-U C-UU-AGAGA -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCAA-GC-C G-A-AGGAAG -UUUUAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAA-U-C 5761 AG-CG-AG-U UUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-AG 5881 CC--GGAA-- GG-UU---UG --GGU--AAA --CU-UUUGA -AA-UU-UC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---GC-A U-UGUAAUU- A-UUGCUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UUAU-AG- 6121 UGAGCA-UAU -GGGA----- --UCA-G-UA GAAU---UA- --GGUUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CA-ACCU- ----U----- 6241 ---------- --------UC -UC--U-G-C A-GA---GAA C---UAUG-G CAAA-CUA-G 6301 G-C-UA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Allm.macro 7872 bp RNA RNA 02-JUL-1998 DEFINITION Allomyces macrogynus (fungus). REFERENCE 1 AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B. TITLE congruency between nuclear ribosomal RNA- and protein-based trees JOURNAL J. Mol. Evol. 41, 657-665 (1995) COMMENT Corresponding GenBank entry: U23936|g777407 common_name= fungus BASE COUNT 491 a 362 c 481 g 544 u 5994 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUA-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUG-UUU- 121 AUAC------ ----AAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AA-UUUAU- -UUGA-UA-- 241 GUACCCUUUU ACUA------ ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAC AAAA------ ---------- ---------- 361 --G-UCCU-- -----GACC- ---------- ---------- ---------- -----UUUAC 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GCAG-UU -AUUA-GAUA CAAA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ------CCGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGG----- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UUU--U-UGG U---GAUUCA --UG-AUAAC UUUGCGGA-- -------CC- G----CA--- 1021 -UG----GC- ---------C CU-------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GG-CGGG -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUGUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GA- 1201 UAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----AUA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CGAU----- -GC-AG---- 1861 -GACC----- --UUUU---- GG-U-C---- UU--UG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 C-AA-G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------UUU UUUUCGU--- -AGCUA--GC 2521 CAUUG----- -UUC------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- CC----UUUG C-----GG-- 2641 ---------- ---------- UC-AA-UG-- -UGCAUU--- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UGG C-U------A CAGG------ CC-CU----- -UUUUUUCUG CUA-G-GAGA 2821 UG---CGGCU CUU-CUG--- -CUUGU---- -CA-GC-GG- -GGCUG---- CAGUUUU-CC 2881 U--AG---CA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UUUUCUU- ---------- ---------- ---------- ---UGCCU-- --GAAUAU-C 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACU---AGA G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- AG--UA-U-U UAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-G 3481 GA-A-AG-AC UAAC-UUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAAGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGGCG CU---U---- -GU------- ---------- --AGUUUUUC 3721 CAAAAAG--- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --AC----AC --G-CCCG-- ----GCA--- --------CC U-UUU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UG-G-UAAGG AUU-G-ACA- 4621 GA--UUGAAA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUCG -U-GGA-UUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-U U-CCU-ACUC G-UUA-C-UU G-C---UCA- -----UG-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----UUUUA U----CUCA- 5521 --UGG---CA CGC--A-A-- ------GU-U C-UU-AGCGG -GA---CUG- C-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-G-AGGAAG -UUCGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-C-G -CACGCGCGC UA-CACU-GA -UGCAG-U-C 5761 AG-CA-AG-U UUUUUAACUG GCUG-UA-GU UC--UUUCGG GAGCUAUGGU CGAUU----- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GC 5881 CC--GAAA-- GG-GU---UG --GGU--AAU --CU-UUUGA -AA-CU-GC- AU-C-G-UG- 5941 AUG-GGGAU- CGA---CC-U U-UGUAAUU- A-UCGGUCG- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G U-GUG-GG-U CAUCAG--CC C-ACGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-CU-U-AG- 6121 UGAGAU-UUU -UGGA----- --UUG---UU GAGC---GA- --UUGCA--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --UG-UGAA- ----C----- 6241 ---------- --------G- -CC--C-G-A C-GA---GAA A---UUGA-U CAAA-CUU-G 6301 G-U-CA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Chyt.cnfrv 7872 bp RNA RNA 02-JUL-1998 DEFINITION Chytridium confervae str. 81-1 (chytrid). REFERENCE 1 AUTHORS Bowman,B.H., Taylor,J.W., Brownlee,A.G., Lee,J., Lu,S.-D. and White,T.J. TITLE Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes JOURNAL Mol. Biol. Evol. 9, 285-296 (1992) COMMENT Corresponding GenBank entry: M59758|g167242 common_name= chytrid isolate_name= 81-1 BASE COUNT 470 a 315 c 438 g 484 u 6165 others ORIGIN 1 .......... .......... .......... .......... .......... .........A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACAAAUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 AUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA UAAA------ ---------- ---------- 361 --A-GGCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGC-CU- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- -------CCG GAAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CGG------ 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UCU--U-UGG U---GAUUCA --UA-GUAAC UUUUCGAA-- -------UC- G----CA--- 1021 -UG----AC- ---------U UUAC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GUCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-UU- 1201 UAA-CGGG-U -AACGGCGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----AUU--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -CC-AG---- 1861 -GGC------ --UUAG---- -G-U-C---- -U--UG-GAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAUAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -UU-U---G- 2521 AAGGUCG--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UG- CC-----AAU ------GGCA 2641 ---------- --------UG UA-CU-UU-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- G-G------C CUG------- GU-CU----- ----UUCCUU GUG-G-GGAA 2821 CA----CGU- -GU-GCAC-- -UUUACU--- GUG-U--GU- --GCG----- UG--GGA-UC 2881 C--AU---AA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUU-A-AA-G -C-GGGC--- 2941 A-UU------ ---------- ---------- ---------- ---UGCUU-- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AGCC---GAA G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- UG--UA-U-U AAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-A 3481 UU-A-AG-AC AAAC-UUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGGG-GAU -CGAA-GAUG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCU- G--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGACG U----U---- -GU-A----- ---------- --UUUUAU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----AC --G-UUCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -ACC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-UCU-GCUA A-AUA-G-UU G----CAUU- -----CA-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU G-----GUG- 5521 --GAU-G--- ACC--A-A-- ------CU-U C-UU-AGAGA -GA---CUA- U-GU-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GU-A C-G-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CAAUG-G-C 5761 AG-CA-AG-U AUUC------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GGAA-- GG-CC---UG --GGU--AAU --CU-UCUGA -AA-CA-UU- GU-C-G-UG- 5941 CUG-GGGAU- UGU---CC-C U-UGCAAUU- A-UUGGACA- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-CU-U-AG- 6121 UGAGAC-CUC -CGGA----- --UUG-A-AA GCUC---UU- --GGGCA--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --UG-CCCG- ----A----- 6241 ---------- --------UA -GC--U-G-U U-GA---GAA G---UUGG-U CAAA-CUU-G 6301 G-U-CA-UUU AG-AGGA--- AG........ .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Scyp.cilia 7872 bp RNA RNA 02-JUL-1998 DEFINITION Scypha ciliata (sponge). REFERENCE 1 AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science in press (1993) COMMENT Former RDP Sids: Scyp.lingu Corresponding GenBank entry: L10827|g176084 common_name= sponge BASE COUNT 483 a 356 c 475 g 499 u 6059 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCGUUCUU- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 UUGACUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU UAAA------ ---------- ---------- 361 --G-UCCU-- -----GACC- ---------- ---------- ---------- -----UCUCG 421 G--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUC CAAA------ --ACCGA-UG ---------- 601 ---------- ---------- ---------- ---------- -----CAGUC GAAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCUG---- 901 ---------- ---------- ---------- ---------- ---------- ---------G 961 UUA--U-UGG U---GAUUCA --UG-AUAAC UGAACGGR-- -------UC- G----CA--- 1021 -UG----GU- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGAC -UCA-UAC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-AG -GUAG-UGG- CUU----ACC A-UGGU-UG- 1201 CAA-CGGG-U -AACGGAGAA U-UAGRGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- GAU------- ----AAAUAA -CAAU----- -GC-AG---- 1861 -GACUC---- --UAAC---G AG-U-C---- -U--UG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAACC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-AG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGA--- -GC-U----C 2521 ACGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CU----UUUC ------GGGU 2641 G--------- --------UG CA-CU-GUG- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- G-U------U CUG------- UU-CU----- -----UCUUC UCG-UGGA-- 2821 GCGU---GU- -GU-GCUC-- -UUCAUU--- GAG-U--GU- -GC-----AC GU--AAC--U 2881 C--GG---GA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UU------ ---------- ---------- ---------- ---GGCUU-- --GAAURC-A 3001 U-UAGCA-UG G-AAUAAU-G AAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACC---AAG G-UAA-UGAC YAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- A--AC-CA-U -AAACGAU-G -CCGACU--- AGG------- 3661 ----GAU--- ----CGGUGG A----U---- -GU-UAU--- ---------- --UAA----- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----UC --C-AUCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUAA 3961 U-C-GCAA-G AU-CGGA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UU A-----CGCG -----AU-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUC G-----AAU- 5521 -CGCG----G C-C--A-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-UG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-AC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAG-U-C 5761 AG-CG-AG-U UCUU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-CA 5881 CC--GAUA-- GG-UG----U --GGG-UAAU --CU-UGUGA -AA-CU-UC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---CC-A U-UGCAAUU- A-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-CUU -CGGA----- --UUG-C-UG GCCC---GG- ---CGGC--- ---------- 6181 ---------- ---------- ---------- ---CUUGU-- --GU-UG-C- ----C----- 6241 ---------- --------GG ACA--C-A-G C-GA---GAA G---UUGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCC~~~~~~ ~~ // LOCUS Mnmp.leidy 7872 bp RNA RNA 02-JUL-1998 DEFINITION Mnemiopsis leidyi (ctenophore). REFERENCE 1 AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science in press (1993) COMMENT Corresponding GenBank entry: L10826|g175275 common_name= ctenophore BASE COUNT 479 a 376 c 470 g 480 u 6067 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUUUU--- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-RA -UCAG-UUAU -CG-UCUAU- -UUGA-UU-- 241 GUGCCCUUAC UA-------- ---------- --------CA -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGA AAA------- ---------- ---------- 361 --G-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUU AAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----GCGUU UAAC------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACGC---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UUU--U-CGG U---GAUUCA --UA-AUAAC UGUUYGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C CUCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGUU -UCA-UUC-G AGUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-AG -GUAU-UGG- CUU----ACC A-UGGU-GA- 1201 CAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CCG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----AUU--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CGUU----- -GC-AG---- 1861 -GCGCC---- --AAC----G GC-U-U---- -C--UG-CAG -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUAU-AACAC CCUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-AA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CCGG--- -CC-G----A 2521 UUGGUCC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------GU- CC-----UCU ------GGAU 2641 ---------- ------CGUG UA-CU-GAU- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- -GG------U CUG------- UU-CU----- -----UCUUC GCG-AAGA-- 2821 CCGC---GU- -GU-GCCC-- -UUAACU--- GGG-U--GG- -GC-----GY GG--GAU--U 2881 C--GC---GA --CGUUUACU UUR-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-GU------ ---------- ---------- ---------- ---CGCUY-- --GAAUAU-C 3001 U-CAGCA-UG G-AAUAAU-A GAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CU UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGA GACC---GAA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-UUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGAG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUCC- A--AC-CA-U -AAACGAU-G -CCGUCU--- GCG------- 3661 ----GAU--- ----CGGAGG U----C---- -GC-U----- ---------- --CAAUUAA- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----UC --C-UUCG-- ----GCA--- --------CG C-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-A CUU-CGGG-U -UCC-GGGGG -GAG-UAUGU 3961 U-C-GCAA-G AA-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- CU-GCGG-U- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UG A-----CACG -----GU-UC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------UU U----GAAC- 5521 -CGUG----G C-U--C-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCAA-AC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCA -CACGCGCGU UA-CACU-GA -UGAAG-C-C 5761 AG-CG-AG-U AUAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC U-----U-CA 5881 CC--GGAA-- GG-UG----C -GGGU--AAU --CU-UGUGA -AA-CU-UC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---CC-A U-UGCAAUU- A-UUGGUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-ACG-AG-U CAUCAA--CU C-GUGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-CUC -GGGA----- --UUG-G-CG ACGC--CA-- ---UGCY--- ---------- 6181 ---------- ---------- ---------- ----GCGA-- --GG-CA--- ---------- 6241 ---------- ------CGGC -GC--C-G-C C-GA---GAA C---UUGC-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCC~~~~~~ ~~ // LOCUS Anem.slcat 7872 bp RNA RNA 02-JUL-1998 DEFINITION Anemonia sulcata (snake-locks sea anemone). REFERENCE 1 AUTHORS Hendriks,L., Van de Peer,Y., Van Herck,M., Neefs,J.M. and De Wachter,R. TITLE The 18S ribosomal RNA sequence of the sea anemone Anemonia sulcata and its evolutionary position among other eukaryotes JOURNAL FEBS Lett. 269, 445-449 (1990) COMMENT Corresponding GenBank entry: X53498|g5704 common_name= snake-locks sea anemone BASE COUNT 469 a 363 c 483 g 484 u 6073 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCACUU--- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UU-- 241 GUACGUUUAC UA-------- ---------- --------CU -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGA AGA------- ---------- ---------- 361 --G-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUU CAAA------ --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- -----CGGGU UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 GCU--U-UGG U---GAUUCA --UA-GUAAC UGAUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUGUCG- -AUGGUA-AG -GUGU-UGG- CUU----ACC A-UGGU-UA- 1201 CAA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACU--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AACUAA -CAAU----- -AC-AG---- 1861 -GGCUU---- --UUGU---A AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA ACUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACUU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGC--- -AC-G----G 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC----CGCA A-----GUG- 2641 ---------- -------UGU CA-CU-GGC- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- -GG------G CCG------- CU-CU----- -----UCUUC GCA-AAGA-- 2821 CCG---CGU- -GU-GCUC-- -UUGACU--- GAG-U--GU- -GCG-----C GG--GAG--U 2881 U--GC---GA --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-AG------ ---------- ---------- ---------- ---CGCUU-- --GAAUAC-A 3001 U-AAGCA-UG G-AAUAAU-G GAAU-AGGA- C--U-UGGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG AACC--UGAA G-UAA-UGAU UAAGA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U -CGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUAU- A--AC-CA-U -AAACGAU-G -CCGACU--- AGG------- 3661 ----GAU--- ----CAGAGA G----U---- -GU-UAU--- ---------- --UGG----- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CU --C-UUUG-- ----GCA--- --------CC U-UAG----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UUC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GC-G-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UU A-C---GCC- -----CA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CGC G-----AUG- 5521 --GGC---AA C-U--A-A-- ------CU-U C-UU-AGAGG -GA---CUG- U-UG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-AC-C A-A-AGUCAG -G--AAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGAUG-U-C 5761 AA-CG-AG-U CUCU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GG 5881 CC--GAAA-- GG-UC----U --GGG-UAAU --CU-UCUCA -AA-CA-UC- GU-C-G-UG- 5941 CUG-GGGAU- AGA---UC-A U-UGCAAUU- U-UUGAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGGA-CUC -CUGA----- --UUG-G-CG CCGC---GC- ---CCCG--- ---------- 6181 ---------- ---------- ---------- ----GCCA-- --CG-GA-G- ----C----- 6241 ---------- ------AGCG GAC--U-G-C C-GA---GAA G---UUGU-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Trpx.sp1 7872 bp RNA RNA 02-JUL-1998 DEFINITION Trichoplax sp. (placozoan). REFERENCE 1 AUTHORS Aleshin,V.V., Vladychenskaya,N.S., Kedrova,O.S., Milyutina,I.A. and Petrov,N.B. TITLE Phylogeny of invertebrates deduced from 18S rRNA comparisons JOURNAL Mol. Biol. 29, 843-855 (1995) COMMENT Corresponding GenBank entry: Z22783|g313132 common_name= placozoan BASE COUNT 489 a 338 c 462 g 498 u 6085 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCACUU--- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -CG-UUUAU- -UUGA-UC-- 241 GUACAUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGA AAA------- ---------- ---------- 361 --G-UCCC-- -----GACU- ---------- ---------- ---------- -----UUGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUC AAAA------ --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- ---------G 961 UGU--U-UGG U---GAUUCA --UA-AUAAC UUAUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGCU -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-AG -GUAU-UGG- CUU----ACC A-UGGU-UA- 1201 CAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCC-G ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GGCC----- --AUCU---- GG-C-U---- -U--CG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-AA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGAA--- -UC-U----G 2521 ACGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UAAC ------GGUG 2641 ---------- --------AG UA-CU-GGA- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- G-A------U UUG------- UU-CU----- -----UCUUC UUG-AGGG-- 2821 CUG---CAU- -AU-GCUC-- -UUAAUU--- GAG-U--GU- -GUG-----U AG--GAC--U 2881 U--AA---GA --CUUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-AU------ ---------- ---------- ---------- ---CGCUU-- --GAAUAC-C 3001 U-GAGCA-UG G-AAUAAU-A AAAU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACC---GAA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CGCGUA-C-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- UGUAGUUCU- A--AC-CA-U -AAACGAU-G -CCGUCU--- AGG------- 3661 ----GAU--- ----CAGUGG G----U---- -GU-UAU--- ---------- --UUU----- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----UC --C-AUUG-- ----GAA--- --------CC U-UAA----- 3901 ---------- GGGAAA-CC- A----AAG-A UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-CU-A U-CCU-ACUA A-AUA-G-UU A-C---GU-- -----GU-UC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------UA C----GGAA- 5521 --CAC----G C-G--A-A-- ------CU-U C-UU-AGAGG -GA---CAA- U-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-A-AGUAAG -U--AGGGC- CAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG--CG --ACGCGCGC UA-CACU-GA -UGAAG-G-C 5761 AG-AG-AG-U CCU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCU ------A-CA 5881 CU--GGGA-- GG-UG----C --GGC-UAAU --CU-U-UCA -AA-CU-UC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---CC-C U-UGUAAUU- A-UUGGUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CC-U --G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --UUG-G-UG AUGG--CGU- ---GACU--- ---------- 6181 ---------- ---------- ---------- ----UUAC-- --GG-UU-G- ----U----- 6241 ---------- -------GCC AAU--U-A-U C-GA---GAA G---UUGA-U CAAA-CUU-G 6301 A-U-CA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Caen.elega 7872 bp RNA RNA 02-JUL-1998 DEFINITION Caenorhabditis elegans (nematode). REFERENCE 1 AUTHORS Ellis,R.E., Sulston,J.E. and Coulson,A.R. TITLE The rDNA of C. elegans: sequence and structure JOURNAL Nucleic Acids Res. 14, 2345-2364 (1986) COMMENT Corresponding GenBank entry: X03680 common_name= nematode BASE COUNT 451 a 360 c 467 g 481 u 6113 others ORIGIN 1 .........U ACCUGAU-UG A--U-UC-UG UC-AG-C--G C-GAUAUGCU -CAA-GUA-A 61 AA-GAUUAA- -GCCAUGC-A UGC-UUUGAU ---------- -------UCA U--------- 121 ---------- ----CAAUGA A--------- ---------- ---------- ---------A 181 U-U-----GC GUA-CGGC-U -C-AUUA-GA -GCAG-AUAU -CA-CCUUA- -UCCG-GG-- 241 AUCCGGAUCC UCA------- ---------- --------UA -U-GG-AUAA C-U-GCGG-- 301 AA-AUA-CUG GAGCUAA-U- --ACAUGCAA CUAU------ ---------- ---------- 361 --A-CCCC-- -----AAC-- ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGC-- 541 ---GGG-GU- ---GCAA-UU -AUUA--GAA CAG------- --ACCAA-A- ---------- 601 ---------- ---------- ---------- ---------- ------CGUU UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACG----- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UGU--U-UGU U---GACUCU --GA-AUAAA GCAGUUUA-- -------CU- G----U---- 1021 -CA----GU- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- ----ACUGA- -C-UC-UAUC -CGG-AAA-G GGUGU-CUGC 1141 --CCU-UUC- AA-CU--AG- -AUGGUA-GU -UUAU-UGG- ACU----ACC A-UGGU-UG- 1201 UUA-CGGG-U -AACGGAGAA U-AAGGGUUC -GACU-CCGG A-GAGGG-AG -C-CUU---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACG- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GA A-ACUU-AUC C-AC-UGUU- ---GAGU--- 1801 ----AUGA-G AUA-GUGAC- UAA------- ----AAAUAU -AAAG----- -AC-UC---- 1861 -A-UCC---- --UUUU---G GA---U---- -G--AG-UUA -UUU------ ---------- 1921 ---------- ---------- ---------- ---------- -------CAA UGAGU----- 1981 ------U-GA AUAC-AAAUG AUUCU----- -------UCG A-GU-AGCAA GGAGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUCCU-AG-U 2101 GUAU-CUC-- GUUAUUGC-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 A-G--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----ACG--- -UGCC----G 2521 CAGUU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CA-----AUU ------UGCG 2641 ---------- ---------U CA-AC-UGU- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- GU-------C GU-------- GA-CU----- -UCUAAUUUG CUG-GUUUG- 2821 AG----GUU- ----GGG--- --UUCG---- -CC-C----- -UUCAA---- CU----G--C 2881 C--AG---CA --GGUUUACC UUG-AAUAAA U-CAGAGU-G CUC-A-AU-A -C-AAGC--- 2941 G-CU------ ---------- ---------- ---------- ---UGCUU-- --GAAUAG-C 3001 U-CAUCA-UG G-AAUAAU-G AAAC-AGGA- C--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC U---UUU--U GUUGGUUCU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AGA --AC--UGAU U-UAA-UGGU UAAGA-GGGA C-AAACC--- ---------G 3421 GGGGCA-UU- CG--UA-U-C AUUA-C-G-C G-A-GAG-GU GAAA-UUC-G UGGACCGU-A 3481 GU-G-AG-AC GCCC-AACAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUCU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GGCG --AUUA-G-A 3601 UAC-C-GC-- CCUAGUUCU- G--AC-CG-U -AAACGAU-G -CCAUCU--- CGC------- 3661 ----GAU--- ----UCGGAG G--------- -G--U----- ---------- --UUUU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GCC----CU --G-CCGA-- ----GGA--- --------GC U-AUC----- 3901 ---------- CGGAAA-CG- A----AAG-U CUU-UCGG-U -UCC-GGGGG -UAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CA-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-A-UUAGG ACU-G-ACA- 4621 GA--UUGAAA GC--UCUUU- CUCGAUU-U- GGUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUUAU U--CCGAU-A 5161 AC-GAG-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-UU G-----GCGA -----AU-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC G-----GGU- 5521 -UCGU----- A-U--A-A-- ------CU-U C-UU-AGAGG -GA---UAA- G-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C G-C-ACG-AG -AUUGAG-C- GAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGUGC UA-CACU-GG -UGGAG-U-C 5761 AG-CG-GG-U UUUU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UA-UG 5881 CC--GAAA-- GG-UA---UC --GG--UAAA --CCGU-UGA -AA-UU-CU- UC-C-A-UG- 5941 UCC-GGGAU- AGG---GU-A U-UGUAAUU- A-UUGCCCU- UA-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G U-GUG-AG-U CAUCAG--CU C-ACGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- U-C-CGGGA- CU--GAAC-U G-AU-U-CG- 6121 AGAAGA-GUG -GGGA----- --CUG-U-CG CUUC---GA- ---GGUU--- ---------- 6181 ---------- ---------- ---------- ----UAAC-- --GA-CU-U- ----C----- 6241 ---------- --------GU U-G--U-U-G C-GG---AAA C---CAUU-U UUAU-CGC-A 6301 U-U-GG-UUU GA-ACCG--- GGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AGCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGCUG-GA UCAUCG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Stro.purp3 7872 bp RNA RNA 02-JUL-1998 DEFINITION Strongylocentrotus purpuratus (purple sea urchin). REFERENCE 1 AUTHORS Turbeville,J.M., Schulz,J.R. and Raff,R.A. TITLE Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology JOURNAL Mol. Biol. Evol 11, 648-655 (1994) COMMENT Corresponding GenBank entry: L28055|g508546 common_name= purple sea urchin BASE COUNT 438 a 430 c 503 g 425 u 6076 others ORIGIN 1 .......... ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA AGCUCGUCU- 121 ---------- ----CGACGA A--------- ---------- ---------- ---------A 181 C-U-----GC GGA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCAU- -UGGA-UC-- 241 GAGUCCCCCC GA-------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU CCAAG----- ---------- ---------- 361 ----CGCC-- -----GACU- ---------- ---------- ---------- -----UUCC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----AGAA- 541 ---GGC-G-- --UGCUU-UU -AUU-AGGAA CAAG------ --ACCAGC-- ---------- 601 ---------- ---------- ---------- ---------- -----CCGGU CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCGG---- 901 ---------- ---------- ---------- ---------- ---------- --------CC 961 ACA--C-UGG U--GAACUCU G--G-AUAAC ACAGCCGA-- -------UC- G----CA--- 1021 -CG----GU- ---------C UUUGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGGA -UCC-UUC-G AAUGU-CUGC 1141 --CCUAAUC- AA-CUUUCG- -AUGGUA-CG -UUAU-GCG- CCU----ACC A-UGGU-CG- 1201 UCA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGU A-GAGGG-AG -C-UUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGCUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-C ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CCAG--- -GCCU----- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GUGA ------GGCG 2641 ---------- --------UG UA-CU-GC-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AG U-C------C UGG------- -C-CU----- -----UCCUC UCG-GUUU-- 2821 UC---GCCC- GGU-GCCC-- -UUAAUU--- GAUGU--GC- C-AG------ GA-GAGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAAA U-UGGAGU-G UUC-A-AA-G -C-AGCC--- 2941 --UCG----- ---------- ---------- ---------- ---CGCCU-- --GAACAG-C 3001 A-GAGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUG--C GUUGGUUUUC ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------GG AACU--CGAG G-UAAGUGAU UAAGA-GGGA C-UGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-U-GGU G-A-GAG-GU GAAA-UUC-U UGG-UCGC-C 3481 GC-A--G--C GACC-GAC-G C-GAAA--GC AA--UUUG-C C-AAG----- ---AAUGUUU 3541 UUC--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCGACU--- GAC------- 3661 ----GAU--- ----CCGCCG G----C---- -GU-UA---- ---------- --CUCCCA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----GC --G-GCGG-- -----CA--- --------GU C-UAA----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGA--G-- CC-UGCG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CUU-GCUA A-AUA-G-UU G-----CGC- -----CA-CC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CCG C----GGUG- 5521 -CGCG----- -UC--A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-G--- --------AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCCG UA-CACU-GG -CGGAA-UCC 5761 AG-CG-GG-U ACAC------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UGC CC---UU-GG 5881 CC--GGAA-- GG-UC----U GGGUA--AUC --CG-C-UGA -AC-CU-CC- UC-C-G-UG- 5941 AUG-GGGAU- AGG---GA-G U-UGCAAUU- A-UCUCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-CCU -CGGA----- --UCG-U--- CGGCGU---- ---CGGGC-- ---------- 6181 ---------- ---------- ---------U UGCGCCUC-- -GCU-CGC-- ---------- 6241 ---------- ------AUGU ---------A C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Opph.acule 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ophiopholis aculeata (brittle star). REFERENCE 1 AUTHORS Turbeville,J.M., Schulz,J.R. and Raff,R.A. TITLE Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology JOURNAL Mol. Biol. Evol 11, 648-655 (1994) COMMENT Corresponding GenBank entry: L28056|g508604 common_name= brittle star BASE COUNT 457 a 410 c 495 g 439 u 6071 others ORIGIN 1 .......... ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUUAGU ---------- -------ACA AGCUUGUAUC 121 ---------- ----AAGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GGA-UGGC-U -C-AUUA-AA -UCAG-UCAU -GG-UUCCU- -UGGA-AC-- 241 GAGUUGCCCU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUA CCAAG----- ---------- ---------- 361 ----CGCC-- -----GACC- ---------- ---------- ---------- -----UCUU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GG-CUG- --UGCUU-UU -AUU-AGGAA CAAAG----- --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- GCCUAGCCCG 661 CUUUCG---- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGG U--GAACUCU G--G-AUAAC UUAGCAGA-- -------UC- G----CA--- 1021 -CG----GU- ---------C AUCGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CAGA AACC-AUC-A AACGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UUAU-GCG- CCU----ACC A-UGGU-CG- 1201 UAA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCUCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAUGCUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----UAUCU 2221 A-G--G-G-C UU-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGGC--- -UG------- 2521 AGGGU--CCG UC-------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------G- UA----AGGG G-----UGC- 2641 ---------- ---------- -A-CU-CUGA GUAC------ ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- C-A------G CCU------- -C-CC----- --------UC GCG-GCUUG- 2821 UC---GCCC- GGU-UCUC-- -UUAACU--- GAG-U--CC- C-GGG----- UG--CGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAAA U-UGGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-CAAC---- ---------- ---------- ---------- ---AGCCU-- --GAACAG-U 3001 A-GAGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUG--C GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AAG AGUC--CGAG G-UAA-UGAU UCACA-GGGA C-UGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-U-G-U G-A-GAG-GU GAAA-UUC-U UGG-UCGC-C 3481 GC-A-AG-AC GACC-GGUAG C-GAAA--CG ----UUUG-C C-AAG----- ---AAUGUAU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUACAG-GUU -CGAA-GGCG --AUAC-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACUAU-G -CCGAC--C- -GC------- 3661 ----GA---- ----UUGCCG C--------- -GU-UAU--- ---------- --AUCA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----AC --G-GCAA-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --G-AG---- CU-GC-G-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G-CUA AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CUU-GCUA A-AUA-G-UU G----CGCC- -----AC-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CGCCG A-----GGU- 5521 -GGGC-G--- -AC--A-A-- ------CU-U C-UU-AGAGG -GA---CUA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-GCG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UUC CC---UU-GG 5881 CC--GGAA-- GG-UC----U GGGAA--AUC --CG-U-UGA -AC-CU-CU- UU-C-G-UG- 5941 AUU-GGGAU- AGG---GA-A U-UGUAAUU- A-UUUCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-CCU -CGGA----- --UUG-G-C- -CGGGUCG-- ----CGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-G-GC- ---AC----- 6241 ---------- -----GAUCC -UG--C-G-C U-GA---AAA G---ACGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Sacg.kowal 7872 bp RNA RNA 02-JUL-1998 DEFINITION Saccoglossus kowalevskii (acorn worm; North American benthic enteropneust). REFERENCE 1 AUTHORS Turbeville,J.M., Schulz,J.R. and Raff,R.A. TITLE Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology JOURNAL Mol. Biol. Evol 11, 648-655 (1994) COMMENT Corresponding GenBank entry: L28054|g508582 common_name= acorn worm; North American benthic enteropneust BASE COUNT 412 a 445 c 533 g 428 u 6054 others ORIGIN 1 .......... ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACG AGCCUCG--- 121 GUACA----- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-U--- 241 CGUUACCCCU UA-------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCCU ACCUC----- ---------- ---------- 361 --G-GCGCU- -----GACC- ---------- ---------- ---------- -----UCGCG 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGA-- 541 ----UG-CU- ---GCUU-UU -AUUA-GGAC CAAG------ --ACCGACCC -GGUGUC--- 601 ---------- ---------- ---------- ---------- ----CUGCCU CCUUCGC--- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGUGG--- 901 ---------- ---------- ---------- ---------- ---------- UGGGCCCGGU 961 CCU-CC-UGG C--GAACUCU --GG-AUAAC UUGGCGGA-- -------UC- G-----A--- 1021 -CG----GC- ---------C UCUGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----G--GG- -C-GA-CGAA -CU--UUC-G AGUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -ACGGUA-CG -UUAU-GCG- CCU----ACC G-UGGU-GG- 1201 CAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AU-UCCCG ----ACA--- 1801 -C-GGG-A-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --UUUG---G AG-GCC---- -C---G-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGC----- 1981 ------A-CA GUCC-AAAUC CUUUA----- -------GCG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-U-UGC -CGCG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGCUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-U-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CC-G--C -GGGCG---G 2521 GCGGAAGUU- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- UC----CGUA C-----GAG- 2641 ---------- --UGGGUCUU CG-CU-GCC- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------CGU C-C------C -GG------- -A-CU----- -----CUCCU CCG-GUCCU- 2821 CU----CCC- GGU-GCUC-- -UUGGUU--- GAG-U--GU- C-GG------ GG-GCGG--C 2881 C--GG---AA --CGUUUACU UUG-AAGAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GCCA---- ---------- ---------- ---------- ---CGCCU-- --GGAUAG-U 3001 C-CAGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C CA--UUG--C GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AGG AACG--CGAG G-UAA-UGAU CGAGA-GGGA C-UGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AA CGA----CUG C-GAAC--G- ----UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC---GU-- -CUAGUUCC- G--AC-CG-U -AAACGAU-G -CCGACU--- --C------- 3661 ----GAU--- ----CUG-CG G----C---- -GU-UA---- ---------- --CUCUCU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------A -GAC----CC --G-GCG--- -----CA--- --------GC U-CC------ 3901 ---------- -GGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---GA--G-- CU-GC-G-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-CGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-U- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CA --GG-UUGAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U GGCUU-GCUA A-AUA-G-UC G-U-GCGAC- -----CC--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- UUAACGUUGU C------GG- 5521 -CGAC----- --C-GA-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCC----- -----CG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG--CC -ACGCGCGCG UA-CACU-GA -AGGGA-U-C 5761 AG-CG-GG-U GUCGCCU--- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UG-GC 5881 CG--ACAG-- GA-CC----C --AGG-CAAU --CCGA-UGA -GC-CC-CC- UU-C-G-UG- 5941 CUA-GGGAU- AGG---GA-A U-UGUAAUU- A-UUUCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-G-G C-GCG-AG-U CAUAAG--CU C-GUGU-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAC-G G-UU-U-AG- 6121 UGAGAU-CUU -CGGA----- --UCG-C-AC GCGC---GG- --GGACUGG- ---------- 6181 ---------- ---------- ---------- ----UUCU-- --CG-G-CC- ----C----- 6241 ---------- -------UCG UGU--G-U-C C-GA---GAA G---ACGA-U CGAA-CUU-G 6301 A-U-CG-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUC--GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAUG-GA UC........ 7861 .......... .. // LOCUS Trdu.migrt 7872 bp RNA RNA 02-JUL-1998 DEFINITION Turdus migratorius (thrush bird, unspecified). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Corresponding GenBank entry: M59402|g176271 common_name= thrush bird, unspecified BASE COUNT 369 a 424 c 469 g 359 u 6251 others ORIGIN 1 ~~~~~~~~~N NCCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUNNGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGGCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-N -N-NNUA-AA -UCAG-UUAU -GG-UNNCU- -UNNG-UC-- 241 GCUCCUCUCC CGCUC----- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UN-NNU-CUA GAGCUAA-U- --NCAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----CGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAC 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAAC-- -----GG--- 601 ---------- ---------- ---------- ---------- -------NNN NGCCC----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -NNN------ 901 ---------- ---------- ---------- ---------- ---------- ---------A 961 GCU--N-UGG U---GACUCU A--G-AUAAC CUCGAGCCGA -------UC- G----CA--- 1021 --G----CN- ---------C CCCGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -CCA-UUC-G AAUGN-NNNC 1141 --CCU-AUC- AA-CUUNCG- -AUGGUA-CU -GUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -GACGGGNAA U-CAGGNNUC -GAUN-CCGG N-GAGNG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAN-CGG C-UNCCACA- 1741 UC-CAAGGNN -GGCA-GCA- GGC-GC--GN N-NAUU-ACC C-AC-UCCCG ----ACC--- 1801 -C-GGGGA-N NUA-GUNAN- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-NNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGC----- 1981 ------G-CA CUUU-AAAUC CUUGA----- -------GCG A-GG-ANCCA UUGGAG-GG- 2041 -CNN-G-N-N -NNNU-G-CC N-GC-A-GCN -GCGG-NNA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-CUU-- AAAGUUGC-U --GCAGUU-- ----NNAAAG CUCGUAGNN- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----AUC--- -GAGC----- 2521 UNNGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGC CA-CC-GCCU GUC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C AGC------- -C-CC----- ------CGUC UCG-GCGCC- 2821 CC----CUC- GAU-GCUC-- -UUAGCU--- GAG-U--GU- C-C-GC---- GG--GGC--C 2881 N--GA---AG --CGUUUACU UUG-AGAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C--GNC---- ---------- ---------- ---------- ---CGCCG-- --GNAUAC-U 3001 G-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UN--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAAC---GGG G-CCA-UGAU UAAGA-GGGA C-G-CC---- ---------G 3421 GGNNNN-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU NAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGCC-UAGAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-NGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- NGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CNN--- ---NNCA--- --------GC U-CCC----- 3901 ---------- GGGAAA-CC- C----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UNAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGCA---- G--GNGG-C- UU-UA-UUUN 4501 -NNNNAA-CA -CGG-G---A AACCUCA-CC -CGNCC---- ---------- ---------- 4561 ---------- ---------- ---------- -NG-G-AC-A CG-G-ACAGG AUN-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUCGAUU-C- CGUG-GG-UN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GN -NNUG-CAUG 5101 GCN-NN-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --NG-UUNAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CUA-G-UU -AC-GCGAC- --CC-CC-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 --NNU----- CC---A-A-- ------NN-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUGAG-C- AAUAACANG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGNG-C-G -CACGCGCGC UA-CACU-GA -CUGGC-U-N 5761 AG-CU-UG-U GCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------NNC CC---U--CG 5881 CC--GGNA-- GG-CG----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGNAU- CGG---GG-A U-UGCAAUU- C-UUCCCCG- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU N-GCGU-U-G -AUUNNGU-C CC-UNCNNUU 6061 UGUA-CACAC N--NN-NNNU U-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-NCU -CGGA----- --UCG-G-C- -CNNGCNGG- --GGUNG--- ---------- 6181 ---------- ---------- ---------- ---CNNGG-- --CNUGCNN- ----N----- 6241 ---------- ---------- -AG--U-G-U C-GA---GAA G---ACGG-U CGAA-CUN-N 6301 A-C-UA-UCU AG-AGGA--- AGC....... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Gall.gallu 7872 bp RNA RNA 02-JUL-1998 DEFINITION Gallus gallus (chicken). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Corresponding GenBank entry: M59389|g174082 common_name= chicken BASE COUNT 321 a 320 c 365 g 283 u 6583 others ORIGIN 1 .........N NCCNGGU-UG A--U-CC-UG CC-AG-UA-G C--ANNNGCU -NGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGGCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-N -N-NNNA-AA -UCAG-UUAU -GG....... ......UC-- 241 GCUCCCCUCC CNNA------ ---------- --------CU -U-GG-AUAA C-U-GUNG-- 301 NN-NNU-CUN GAGCUAA-U- --NCAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----CGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGNAC 541 ----GN-GN- ---NCAU-UU -AUC--AGAC CAAA------ --ACCAAC-- ---------- 601 ---------- ---------- ---------- ---------- -------GGN CNCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCC------ 901 ---------- ---------- ---------- ---------- ---------- ------NNNN 961 GNN--N-UGG N---NACUCU A--G-AUAAC CUCGAGCCGA -------UC- G----CA--- 1021 --G----CC- ---------C CNNU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -CCA-UUN-N AAUGU-CNNC 1141 --CCU-AUC- AA-CUUNCG- -AUGGUA-CU -GUCU-GUG- CCU----ACC A-UGGU-GN- 1201 NNA-CGGG-U -AACGGGNAA U-CAGGGUUC -GAUN-NCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UNCCACA- 1741 UC-CAAGGAN -GGCA-GCA- GGC-GC--GC N-NAUU-ACC C-AC-UCCCG ----ACC--- 1801 -C-GGGGA-N NUN-GUNAC- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UN-UNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------C-CA CUUU-AAAUN NUUUA----- -------ANG A-GG-ANCCA UUGGAG-GG. 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......ACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-A...... 2941 ......C--- ---------- ---------- ---------- ---CGCCG-- --GAAUNC-U 3001 C-CAGCU-AG G-AAUAAN-G GAAU-AGGA- C--U-CCNG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC NN--UUU--U GUUNGNUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAAC---GGG G-CCA-UGAU UAAGA-GGGA C-GGCN---- ---------G 3421 GGGGNA-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU NAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GAAC-UAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUNN 3541 U-C--AU-UA A-UC-AA-GA A-NGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- NGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACN--- AGC------- 3661 ----GAUC-- -----CGGNN G----N---- -NN-NAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -NAC----CC --G-CNN--- ---NNNA--- --------GC U-CCC----- 3901 ---------- GGGAAA-CC- C----AAG-N NNN-NGGG.. .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 ......A-CA -CGG-G---A AACCUNA-CC -CGNCC---- ---------- ---------- 4561 ---------- ---------- ---------- -NG-G-AC-A CG-G-ACAGG AUN-N-ACA- 4621 GA--UUGAGA GC--UCUUU- CUCGAUU-C- CGUG-GG-UN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------NU -NNNG-CAUG 5101 GCN-NN-NC- UUA--GUUGG -U-GGA-GCN N-UUUGU-CU --NG-UUNAU U--CCGAU-A 5161 AC-GAN-N-G AGACU-CU-G G-CAU-GCUN A-CUA-G-UU -AC-GCGAC- --CC-NN-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCN G----UCGG- 5521 --NNU----- CC---A-N-- ------NN-N C-GU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUGAG-C- AAUAACANG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GNNN-CUG -CACGCGNNC UN-CACU-GA -CUGGC-U-C 5761 AG-CU-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC C----CU-NG 5881 CC--GGNA-- GG-CG----C GGGNN--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGGAU- CGG---GN-A U-UGCAAUU- A-UUCCCNA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U NAUAAG--CU N-GCGU-U-G -AUUNNGU-C CC-UNCNNNU 6061 UGUA-CACAC N--GN-NNNU U-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-NCU -UGGA----- --UNG-G-C- -NCUGGNGG- --GGUN---- ---------- 6181 ---------- ---------- ---------- ----GCNN-- --GG-CNUG- ----N----- 6241 ---------- -----N-NNN -GN--G-N-N --GA---GGA G---ANGG-U CGAN-NUN-N 6301 A-C-UA-UCU AG-AGGA--- AG........ .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Homo_sapie 7872 bp RNA RNA 02-JUL-1998 DEFINITION Homo sapiens (human). REFERENCE 1 AUTHORS McCallum,F.S. and Maden,B.E.H. TITLE Human 18S ribosomal RNA sequence inferred from DNA sequence JOURNAL Biochem. J. 232, 725-733 (1985) COMMENT Corresponding GenBank entry: X03205|g36162 common_name= human BASE COUNT 419 a 500 c 549 g 401 u 6003 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACG CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGG-UC-- 241 GCUCGCUCCU CUCCCA---- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACGG------ ---------- ---------- 361 --G-CGC--- ----UGACCC CCU------- ---------- ---------- -----UCGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -GGGGGGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAU CAAA------ --ACCAAC-- -CCG-GUCA- 601 GCCC--C--- ---------- ---------- ---------- --UCUCCGGC CCCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCGGGGG- 901 ---------- ---------- ---------- -----GC-GG GC-GCCGG-C GG-------- 961 -CU--U-UGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 -CG----CC- ---------C CCCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -CCA-UUC-G AACGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GU -CGCC-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -GACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACC--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------C-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GCGG--- -GCGG----- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGC CA-CC-GCCC GUC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CGC------- -C-CC----- ---UUGCCUC UCG-GCGCC- 2821 CC----CUC- GAU-GCUC-- -UUAGCU--- GAG-U--GU- C-CCGC---- GG--GGC--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-CGAGC--- ---------- ---------- ---------- ---CGCCU-- --GGAUAC-C 3001 G-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--C-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GAG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-CAGAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACC--- GGC------- 3661 ----GAUG-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---GGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-ACAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- CGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CUA-G-UU -AC-GCGAC- --CC-CC-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -CGUC---CC CC---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC UA-CACU-GA -CUGGC-U-C 5761 AG-CG-UG-U GCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CG 5881 CC--GGCA-- GG-CG----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGGAU- CGG---GG-A U-UGCAAUU- A-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU U-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGC-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ---GCCCA-- --CG-GCCC- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C U-GA---GAA G---ACGG-U CGAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Mus_muscul 7872 bp RNA RNA 02-JUL-1998 DEFINITION Mus musculus (common or house mouse). REFERENCE 1 AUTHORS Raynal,F., Michot,B. and Bachellerie,J.P. TITLE Complete nucleotide sequence of mouse 18 S rRNA gene: comparison with other available homologs JOURNAL FEBS Lett. 167, 263-268 (1984) COMMENT Corresponding GenBank entry: X00686|g53990 common_name= common or house mouse BASE COUNT 417 a 497 c 550 g 405 u 6003 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACG CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGG-UC-- 241 GCUCGCUCCU CUCCUA---- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACGG------ ---------- ---------- 361 --G-CGC--- ----UGACCC CCC------- ---------- ---------- -----UUCCC 421 G--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -GGGGGGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAU CAAA------ --ACCAAC-- -CCG-GUGA- 601 GCUC--C--- ---------- ---------- ---------- --CUCCCGGC UCCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCGGGGG- 901 ---------- ---------- ---------- -----UC-GG GC-GCCGG-C GG-------- 961 --C--U-UGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 -CG----CC- ---------C CCCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -CCA-UUC-G AACGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GU -CGCC-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -GACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACC--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------C-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GCGG--- -GCGG----- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGU CA-CC-GCCC GUC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CGC------- -C-CC----- ---UUGCCUC UCG-GCGCC- 2821 CC----CUC- GAU-GCUC-- -UUAGCU--- GAG-U--GU- C-CCGC---- GG--GGC--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-CGAGC--- ---------- ---------- ---------- ---CGCCU-- --GGAUAC-C 3001 G-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--C-GCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GAG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-CAGAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- GGC------- 3661 ----GAUG-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---GGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GG-G-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-ACAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- CGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CUA-G-UU -AC-GCGAC- --CC-CC-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -CGUC---CC CC---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC UA-CACU-GA -CUGGC-U-C 5761 AG-CG-UG-U GCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UG-CG 5881 CC--GGCA-- GG-CG----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGGAU- CGG---GG-A U-UGCAAUU- A-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU U-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGC-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ---GCCCA-- --CG-GCCC- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C U-GA---GAA G---ACGG-U CGAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Trch.scrpt 7872 bp RNA RNA 02-JUL-1998 DEFINITION Trachemys scripta (red-eared slider turtle; dime-store turtle). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Former RDP Sids: Psde.scrpt Corresponding GenBank entry: M59398|g175665 tissue_type= liver dev_stage= egg common_name= red-eared slider turtle; dime-store turtle BASE COUNT 357 a 382 c 417 g 350 u 6366 others ORIGIN 1 .........N NCCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUANGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-N -N-NUUA-AA -UCAG-UUAU -GG-UNNCU- -UNNG-UC-- 241 GCUCCNACCC UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UN-NNU-CUN GAGCUNA-U- --NCAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGNAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- -------GCC 961 GCU--N-UGG U---GACUCU A--G-AUAAC CUCGGGCNGA -------UC- G----CA--- 1021 -GC----CC- ---------C CCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAU -GCA-UUC-G AAUGU-CUNC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UCCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-NNGG N-GAGGG-AN -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAN-CGG C-UNCCACA- 1741 UC-CAAGGAN -GGCA-GCA- NGN-GC--GN N-NAUU-ACC C-AC-UCCCG ----ACN--- 1801 -N-GGGGA-G NUA-GUGAN- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAANC CUUUA----- -------ACG A-GG-ANCCA UUGGAG-GG- 2041 -CAA-G.... .......... .......... .......... UUCCAGC-U- CCAAU-AN-N 2101 GUAU-AUU-- NAAGUUGC-U --NCNGNN-- ----NNAAAG CUCGUAGNNN ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----NAUCU 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CNNN--- -G-------- 2521 -----UC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 --------AC -GNCCGCCNG U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CAG------- -C-CC----- -----CCGUC UCG-GCGCU- 2821 CC----CUU- GAU-GCUC-- -UUNACU--- NAG-U--GU- C-CUG----- GG--NGU--C 2881 C--GA---AN --NNNNUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 N-NGU----- ---------- ---------- ---------- ---CGCCG-- --GAAUAC-U 3001 C-CAGCU-AG G-AAUAAN-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UN--UUU--U GUUNGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-NNA-UGAU UAAGA-GGAA C-G-CC.... .......... 3421 .......UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-CAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AN -GAN----CC --G-CNN--- ---NNCA--- --------GC U-UAC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -NCC-GGGGG -GAG-NAUGG 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .....AA-NA -CGG-G---N NACCNNN-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -NG-G-AC-A CG-G-AAAGG ANN-N-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-N- UGUG-GG-NN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------NN -NNUG-CAUG 5101 GCN-NN-NC- UUA--GUUGG -U-GGA-GCN A-UUUGU-CU --GG-UUNAU U--CCGAU-A 5161 AC-GAN-C-G AGACU-NU-G G-CAU-GCUA A-CNA-G-UU -AU-GCGAC- --CC-CN-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -NNNC----- -C---A-A-- ------NN-N N-UU-AGAGG -GA---CAA- G-UN-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-CCG-AG -AUUNAG-C- AAUAACANG- UCUG-UN-AU 5701 GCCC-UU--- -AN-AUG-UC C-NNNN-CUG -CACGCGCGC UN-CACU-GA -CUGGC-U-N 5761 AG-CG-UN-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CG 5881 CC--GACA-- GG-UG----C GGGNN--ACC --NG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGNAU- CGG---GG-A U-UGCAAUU- A-UUCCCNA- UN-AA-C-GA NGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU N-GNNU-U-G -AUUNNGU-C CC-UNCNNUU 6061 UGUA-CACAC C--NN-NNNU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCUGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----GUCN-- --CG-GCCC- ----U----- 6241 ---------- -----NGUNG -AG--C-G-C C-GA---GAA G---ACGG-U CGAA-CNN-N 6301 A-C-UA-UCU AG-AGGA--- AG........ .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Alli.msspp 7872 bp RNA RNA 02-JUL-1998 DEFINITION Alligator mississippiensis (American alligator). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Corresponding GenBank entry: M59383|g173709 common_name= American alligator BASE COUNT 369 a 396 c 439 g 356 u 6312 others ORIGIN 1 .........N NCCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUANGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UNNG-UC-- 241 GCUCCAACCG UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UN-NUU-CUA NAGCUAA-U- --ACAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UNCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----NC-GU- ---GNAU-UU -AUC--AGAC CAAA------ --ACCAAC-- ---------- 601 ---------- ---------- ---------- ---------- -------GGG CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCC------ 901 ---------- ---------- ---------- ---------- ---------- ------GGCC 961 GCU--N-UGG U---GACUCU A--G-AUAAC CNCGGGCCGA -------UC- G----CA--- 1021 -GC----NC- ---------C NCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -GCA-UUC-G AAUGU-CUNC 1141 --CCU-AUC- AA-CUUUCN- -AUGGUA-CU -UUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCN-CGGG-U -ANCGGGGAN U-CANGGUUC -GAUU-CNGG N-GAGGG-AN -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CNAGGAN -GGCA-GCA- NGC-GC--GN N-NAUU-ACC C-AC-UCCCG ----ACN--- 1801 -N-GGGGA-N NUA-GUNAC- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UNNN---G AG-GCC---- -C--UG-UNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-ANCNA UUGGAG-GG- 2041 -CNA-G.... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .........G CNCGNAGNNN ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GANCN 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CNNG--- -G-------- 2521 -----UC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GNCG 2641 --------AC GUACCGCCNG U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CNG------- -C-CC----- -----CCGUC UCG-GCGCN- 2821 CC----CUU- GAU-GCUC-- -UUNACN--- NAG-U--GU- C-CUG----- GG--NGU--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-GGU----- ---------- ---------- ---------- ---CGCCG-- --GAAUAC-U 3001 C-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-CCA-UGAU UAAGA-GGGA C-G-CC---- ---------N 3421 GGNNCA-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GAAC-CAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-NGAAA--G UCGGNN-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UNNN---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------NU -NAN----CC --G-CCN--- ---NGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GNGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UNAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --G--G-C-- AN-NNGG-C- UU-UA-UUUN 4501 -NNNNAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -NG-G-AC-A CG-G-AAAGG ANN-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------NN -NGUG-CAUG 5101 GCU-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CUA-G-UU -AU-GCGAC- --CC-CC-NA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCN G----UCGG- 5521 -CNUC----- -C---A-A-- ------NU-N C-NU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUGAG-C- AAUAACANG- UCUG-UN-AU 5701 GCCC-UU--- -AN-AUG-UC C-GGGG-CUG -CANGCGCGC UA-CACU-GA -CUGGC-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CG 5881 CC--GACA-- GG-UG----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 ANG-GGGAN- CGG---GN-A U-UGCAAUU- A-UUCCCCA- NN-AN-C-GN GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU C-GCGU-U-G -AUUNNGN-C CC-UNCNNNU 6061 UGUN-CNCAC C--GN-NNNU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UNG-G-C- -CNNGCCGG- --GNUNG--- ---------- 6181 ---------- ---------- ---------- ----GNNN-- --CG-GCCC- ----U----- 6241 ---------- -----NNNNN -NG--C-G-C C-GA---GAA G---ACGG-U CGAA-CUN-N 6301 A-C-UA-UCU AG-AGGA--- AGC....... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Htrd.pltyr 7872 bp RNA RNA 02-JUL-1998 DEFINITION Heterodon platyrhinos (eastern hognose snake). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Corresponding GenBank entry: M59392|g174820 common_name= eastern hognose snake BASE COUNT 381 a 405 c 448 g 360 u 6278 others ORIGIN 1 .........N NCCUNGU-UG A--U-CC-UG CC-AG-NA-G C--ANNNGCU -NGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGGCG-- 121 UGA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-N -N-NNUA-AA -UCAG-UUAU -GG-NNNCU- -NNNG-UC-- 241 GCUCCCACCG UUA------- ---------- --------CU -C-GG-AUAA C-U-GUGG-- 301 NN-NNU-CUA GAGCUAA-U- --ACAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAAC-- ---------- 601 ---------- ---------- ---------- ---------- -------GGG CUNN------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCC------ 901 ---------- ---------- ---------- ---------- ---------- ------GGCC 961 GCU--N-UGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 -GC----CC- ---------C CCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -GCA-UUC-G AACGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAN -GGCA-GCA- GGC-GC--GN N-NAUU-ACC C-AC-UCCCG ----ACN--- 1801 -C-GGGGA-N NUA-GUNAC- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UN-NNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------C-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-NNCCA UUGGAG-GG- 2041 -CNA-G.... .......... .......... .......... UUNCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUN-- ----NAAAAG CUCGUAGNNN ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A NCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -G-------- 2521 -----UC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 --------AC -GACCGCNNG U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CAG------- -C-CC----- ---CUGCCUC UCG-GUGCU- 2821 CC----CCC- GAU-GCUC-- -UUAACU--- GAG-U--GU- C-UCG----- GG--NNN--C 2881 C--GA---AG --CNNNUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GGU----- ---------- ---------- ---------- ---CGCCG-- --GAAUAC-U 3001 C-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACC---GGN G-CCA-UGAU UAAGA-GGGA C-G-NC---- ---------N 3421 GNNNNN-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU NAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GACC-CAGAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUNUUU 3541 U-C--AU-UA A-UC-NA-GN A-NGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----N---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCN--- ---AGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-NAUGG 3961 U......... .....AA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CN--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --G--G-C-- AG-GCGG-C- UU-NA-U... 4501 .....AA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG ANN-N-ACA- 4621 GA--UCGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -NGUG-CAUG 5101 GCN-NN-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CNA-G-UU -AU-GCGAC- --CC-CC-NA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -NNUC----- -C---A-A-- ------NN-N N-UU-ANAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-CCG-AG -AUUNAG-C- AAUAANANG- UCUG-UN-AU 5701 GCCC-UU--- -AG-AUG-UC N-NNNN-CUG -CACGNGCGC UN-CACU-GA -CUGGC-U-N 5761 AG-CG-UN-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CG 5881 CC--GACA-- GG-UG----C GGGUN--ACC --UG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUG-GGGAU- CGG---GG-A U-UGCAAUU- A-UUCCCUA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU N-GCGU-U-G -AUUNNGU-C CC-UNCNNUU 6061 UGUA-CACAC C--UN-NNNU N-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-NCU -UGGA----- --UNG-G-C- -CCUGNCGG- --GGUUG--- ---------- 6181 ---------- ---------- ---------- ----GCCU-- --NG-GCCC- ----U----- 6241 ---------- -----NNNNN -NG--C-G-C C-GA---GAA G---ACGG-U NGAA-CNN-N 6301 A-C-UA-UCU AG-AGGA--- AG........ .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Xeno.laevi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Xenopus laevis (African clawed frog; South African clawed frog). REFERENCE 1 AUTHORS Maden,B.E., Forbes,J.M., Stewart,M.A. and Eason,R. TITLE 18S coding sequences in amplified ribosomal DNA from Xenopus laevis oocytes are highly homogeneous, unmethylated, and lack major open reading frames JOURNAL EMBO J. 1, 597-601 (1982) COMMENT Corresponding GenBank entry: K01373|g214709 clone= pXlr14, pXlr11 common_name= African clawed frog; South African clawed frog biol_source= oocyte BASE COUNT 432 a 466 c 516 g 411 u 6047 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A CGU-GUAAGU ---------- -------ACG CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GCUCCAUCUG UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----CCCA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- ---CCGGGGC CCCCGC---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCCGG-- 901 ---------- ---------- ---------- ---------- ---------- --------CC 961 GCU--U-UGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 -CG----UC- ---------C CCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GACGG- -C-GA-CGAU -ACA-UUC-G GAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UUCU-GCG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACG--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CGGU----- 2521 -----C---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- --------GC U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AC C-G------C CUGUCCCAGC -C-CC----- ----UGCCUC UCG-GCGCC- 2821 UC----CCC- GAU-GCUC-- -UUGACU--- GAG-U--GU- C-CCG----- GG--GGC--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-C-AA-G -C-AGGC--- 2941 C-GCGU---- ---------- ---------- ---------- ---CGCCU-- --GGAUAC-U 3001 U-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GAAC-CAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---AGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CC-U C-CAU-GCUA A-CUA-G-UU -AC-GCGAC- --CC-CC-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------CG G----UCGG- 5521 -CGUC----- -C---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-ACG-AG -AUCGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC UA-CACU-GA -ACGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UG-CG 5881 CC--GACA-- GG-UG----C GGGUA--ACC --CG-C-UGA -AC-CC-CG- UU-C-G-UG- 5941 AUA-GGGAU- CGG---GG-A U-UGCAAUU- A-UUUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU C-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----GCCA-- --CG-GCCC- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Amby.mexic 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ambystoma mexicanum (axolotl (mole salamander)). REFERENCE 1 AUTHORS Hedges,S.B., Moberg,K.D. and Maxson,L.R. TITLE Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships JOURNAL Mol. Biol. Evol. 7, 607-633 (1990) COMMENT Corresponding GenBank entry: M59384|g173718 common_name= axolotl (mole salamander) BASE COUNT 368 a 404 c 445 g 375 u 6280 others ORIGIN 1 .......... ...UGGU-UG A--U-CC-UG CC-AG-UA-G C--ANNNGCU -UGU-CUC-N 61 AA-GAUUAA- -GCCAUGC-N CGU-GUAAGU ---------- -------ACA CACGGCCG-- 121 GUA------- ----CNGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -N-NUUA-AA -UCNC-UUAU -GG-UNNCU- -UUNA-UC-- 241 GCUCCAUCUG UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UN-AUU-CUA GAGCUAA-U- --ACAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UCCC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAG------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- -------GGG CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCC------ 901 ---------- ---------- ---------- ---------- ---------- ------GGCC 961 GCN--N-NGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 --G----UC- ---------C CCCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GACGG- -C-GA-CGAU -GCA-UUC-G GAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -NNCGGGGAA U-CAGGGUUC -GANU-NCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGNAN-CGG C-UNCCACA- 1741 UN-CAAGGAU -GGCA-GCA- GGC-GN--GN N-NAUU-ACC C-AC-UCCCG ----ACN--- 1801 -N-GGGGA-N NUA-GUUAN- NAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UNA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CN CUUU-NAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CU A-GC-A-GCN -GCGG-NNN- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUN-- ----AAAAAG CUCGUAGNNN ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -G-------- 2521 -----UC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 --------AC -GACCGCCUG U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- --C------C CAG------- -C-CC----- -----CCGUC UCG-GCGCC- 2821 CC----CUU- GAU-GCUC-- -UUGACU--- GAG-U--GU- C-CUG----- GG--NNC--C 2881 C--GA---AN --NNNNUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GGU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAC-U 3001 U-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-CCA-UGAU UNNGN-GGGN C-G-CN---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GUUC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GAAC-CAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---AGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAGGG 3961 U......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .....AA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG ANN-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UN ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------NN -NGUG-CAUG 5101 GCU-GU-UC- UUA--GUUGG -U-GGA-GCN A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-N-G AGACU-NC-U C-CAU-GCUA A-CUA-G-UU -AC-GCGAC- --CC-C--CA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -CGUC----- -C---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-ACG-AG -AUNGAG-C- AAUAACANG- UCUG-UN-AU 5701 GCCC-UU--- -AG-AUG-UC C-NNNN-CUG -CACGCGCGC UA-CACU-GA -ACGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UU-CG 5881 CC--GACA-- GG-U-----C GGGUA--ACC --CG-C-UNA -AC-CC-CG- UU-C-G-UG- 5941 AUA-GGGAU- UGG---GG-A U-UGCAAUU- A-UUUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU C-GCGU-U-G -AUUNNGU-C CC-UNCCCNU 6061 UGUA-CNCAC N--NN-NNNU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----GCAU-- --CG-GCC.. .......... 6241 .......... .......... .AG--U-G-C C-GA---GAA G---ACGA-U CAAA-CUN-G 6301 A-C-UA-UCU AG-AGGA--- AG........ .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Ltmr.chlmn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Latimeria chalumnae (coelacanth). REFERENCE 1 AUTHORS Stock,D.W., Moberg,K.D., Maxson,L.R. and Whitt,G.S. TITLE A phylogenetic analysis of the 18S ribosomal RNA sequence of the coelacanth Latimeria chalumnae JOURNAL Environ. Biol. Fishes 32, 99-117 (1991) COMMENT Corresponding GenBank entry: L11288|g175195 biol_source= white skeletal muscle common_name= coelacanth BASE COUNT 427 a 431 c 500 g 421 u 6093 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA AACGGUGC-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GCUCCAACGU UA-------- ---------- --------CU -C-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- -----CCGGG UCCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCGG---- 901 ---------- ---------- ---------- ---------- ---------- --------CC 961 GCU--U-UGG U---GACUCU A--G-AUAAC CUCGGGCCGA -------UC- G----CA--- 1021 -CG----UC- ---------C UCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAU -UCC-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACG--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CGGU----- 2521 -----C---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGC U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AC C-G------C CUGUCCCAGC -C-CC----- ----UGCCUC UUG-GCGCU- 2821 CC----CUU- GAU-GCUC-- -UUAACU--- GAG-U--GU- C-CUG----- GG--GGU--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C--GGU---- ---------- ---------- ---------- ---CGCUU-- --GGAUAC-U 3001 U-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-AAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCAACU--- ACC------- 3661 ----GAU--- ----CCGGCG G----C---- -GU-UAU--- ---------- --UUCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCGG-- ----GCA--- --------GG U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CC-U C-CAU-GCUA A-AUA-G-UU -AC-GCGAC- --CC-C--GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GUG G----UCGG- 5521 -CGUC----- -C---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-AC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC UA-CACU-GA -AUGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CA 5881 CC--GACA-- GG-UG----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUA-GGGAU- CGG---GG-A U-UGCAAUU- A-UUUCCCG- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G U-GCG-GG-U CAUAAG--CU C-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-A- -CCCGCCGG- --GGUCG--- ---------- 6181 ---------- ---------- ---------- ----UCCG-- --CG-GCCC- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C U-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGU...... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Echr.cooke 7872 bp RNA RNA 02-JUL-1998 DEFINITION Echinorhinus cookei (prickly shark). REFERENCE 1 AUTHORS Bernardi,G. and Powers,D.A. TITLE Molecular phylogeny of the prickly shark, Echinorhinus cookei, based on a nuclear (18S rRNA) and a mitochondrial (cytochrome b) gene JOURNAL Mol. Phylogenet. Evol. 1, 161-167 (1992) REFERENCE 2 AUTHORS Bernardi,G., Sordino,P. and Powers,D.A. TITLE Nucleotide Sequence of the 18S rRNA gene from two teleosts and two sharks and their molecular phylogeny JOURNAL Mol. Marine Biol. Biotechnol. 1, 187-194 (1992) COMMENT Former RDP Sids: Echn.cooke Corresponding GenBank entry: M91181|g213125 common_name= prickly shark BASE COUNT 435 a 432 c 490 g 415 u 6100 others ORIGIN 1 .......... .......... .......... .......A-G U--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGGCCG-- 121 GUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GCUCCAAACG UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCA ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----CUCU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC CAAA------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- -----CCGGG CUUC------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCGG---- 901 ---------- ---------- ---------- ---------- ---------- --------CA 961 GCU--U-UGG U---GACUCU A--G-AUAAC CUCGGGCUGA -------UC- G----CA--- 1021 -CG----UC- ---------C UCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GACGG- -U-GA-CGAC -UCA-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUAUCG- -AUGGUA-CU -UUCU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACU--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGCUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-A UCGAG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CGGU----- 2521 -----C---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGC U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AC C-G------C CUGUCCCAGC -C-CC----- ----UGCCUC UCG-GCGCU- 2821 CC----CUU- GAU-GCUC-- -UUAGCU--- GAG-U--GU- C-CUG----- GG--GGU--C 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GGU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAC-U 3001 C-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--C-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU---GGG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GUGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GAAC-AAAAG C-GAAA--GC U---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAUC-- -----CGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---AGCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AU UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CC-C U-CAU-GCUA A-AUA-G-UU -AC-GCGAC- --CC-CC-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -CGUC----- -C---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUAUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC UA-CACU-GA -AUGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UA-CG 5881 CC--GCCA-- GG-UG----U GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUA-GGGAU- UGG---GA-A U-UGCAAUU- A-UUUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUG-A-G U-GCG-GG-U CAUAAG--CU C-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-G- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --AGUCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GCCU- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC..... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Cypr.carpi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cyprinus carpio (common carp). REFERENCE 1 AUTHORS Vera,M.I., Rios,H.M., de la Fuente,E. and Krauskopf,M. TITLE Characterization of the carp rRNA gene JOURNAL Unpublished (1997) COMMENT Corresponding GenBank entry: U87963 (bases 1 to 1584) common_name= common carp BASE COUNT 358 a 413 c 481 g 332 u 6288 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......UCU A--G-AUAAC CUCGGGCCGA -------UC- G----CG--- 1021 -CG----CC- ---------C UCCGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -UCU-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -UUAG-GCG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA AGGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AU-UUCCG ----ACU--- 1801 -C-GGAGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GUCUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGC----- 1981 ------G-UA UCCU-AAACC CAUGG----- -------GCG A-GG-ACCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-G-A GUGGG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGG--- -CGGU----- 2521 -----C---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------AGC C--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AC C-G------C CUGUCCCGGA -C-CC----- ----UGCCUC CCG-GCGCC- 2821 CC----CCG- GAU-GCCC-- -UUAGCU--- GGG-U--GU- C-CGGUCACC UCGGGGC--C 2881 C--GG---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GCCUGU-- ---------- ---------- ---------- ---CGCCGCU --GAAUAC-C 3001 G-CAGCU-AG G-AAUAAU-G GAAU-AGGA- C--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUGGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG AACC--CGGG G-CCA-UGAU UAAGA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGC-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-GAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CG-U -AAACGAU-G -CCGACC--- CGC------- 3661 ----GAU--- ----CCGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-CCG--- ---GGCA--- --------GC G-UGC----- 3901 ---------- GGGAAA-CC- AC---GAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-UGUCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUCAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CC-G G-CUU-GCUA A-AUA-G-UU -AC-GCGGC- --CC-CG-UG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------CG G----UCGG- 5521 -CGUC----- -C---A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-C A-C-GCG-AG -AUGGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC CA-CAAU-GG -GCGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAC CC---UG-CG 5881 CC--GAGA-- GG-CG----C GGGUA--ACC --CG-C-UGA -AC-CC-CG- CU-C-G-UG- 5941 AUC-GGGAC- UGG---GG-A U-UGAAACU- A-UUUCCCA- UC-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-GG-U CAUAAG--CU C-GCGU-U-U -GAUUAAU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --GGCUC--- ---------- 6181 ---------- ---------- ---------- ---CUCGC-- --GG-GCCC- ----U----- 6241 ---------- -----GGCGG -AG--C-G-C C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-C-UA-UCG GG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Gadu.morhu 7872 bp RNA RNA 02-JUL-1998 DEFINITION Gadus morhua (Atlantic cod). REFERENCE 1 AUTHORS Ong,T.L., Armstrong,R.F., McNamara,P.T. and Buckley,L.J. TITLE A dual study of RNA levels in starved Atlantic cod larvae JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: U76257|g1750272 (bases 20 to 832) Corresponding GenBank entry: U76258|g1750273 (bases 1 to 1026) common_name= Atlantic cod BASE COUNT 442 a 456 c 521 g 418 u 6035 others ORIGIN 1 AUAUGGAUUA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GUUUAA- -GCCAUGC-A UGU-AUAAGU ---------- -------CCA CACGGCUG-- 121 GAA------- ----AAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GCUCACCCGC UA-------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAU-UU -AUC--AGAC UUAAA----- --ACCCGCG- ---------- 601 ---------- ---------- ---------- --------CG GGGCGCUGCC GCGU------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGUGGC-CC 901 CCG------- ---------- ---------- ---------- ---------- -------GCC 961 UGU--U-UGG U---GACUCU A--G-AUAAC CUUGGGCCGA -------UC- G----CU--- 1021 -CG----CC- ---------C UCGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGAC -UCA-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CU -CUAU-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AU-UCACG ----ACA--- 1801 -C-GUGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------G-UA CUUU-AAAUC CUUUG----- -------GCC A-GU-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-CUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-G-G CCGGG----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CUGA--- -CGGU----- 2521 -----C---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GAAA ------GGU- 2641 ---------- --------GC U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------AC C-G------A CUGUCCGG-- -C-CC----- ----UGCA-C UCG-GCGCC- 2821 CC----CUC- GAU-GCUC-- -UUGGUU--- GAG-U--GU- C-UUGC---- GG--GGU--U 2881 C--GA---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-CA...... .......... .......... .......... .......... .CGAAUAC-U 3001 G-CAGCU-AG --AAUAAU-G -AAU-A-GA- C--U-CCGN- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--- GUGGUUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -----CUCAU GACU----GG G-CCA-UGA- UAAGA-GGGA C-G-CC---- ---------S 3421 GGGGCA-UU- CG--UA-U-U GCGC-C-G-C U-A-GA--GU GAAA-UUC-U UGGACCGG-C 3481 GC-A-AG-AC GGAC-GAAAG C-GAAA--GC A---UU-G-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCC- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAU--- ----CCGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----C- --G-CCGG-- ----GGA--- --------GC U-ACC----- 3901 ---------- CGGAAA-CC- A----AAG-U CUU-UGG--U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ----GG-U-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAUA-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- GUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAC-A 5161 AC-GAA-C-G AGACU-CU-G G-CAG-GCUA A-AUA-G-UU -AC-GCGGC- ---C-CC-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UGCG G----UCGG- 5521 -CGUC----- -C--AAAA-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUACA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CUG -CACGCGCGC CA-CACU-GA -GCGGA-U-C 5761 AG-CG-UG-U GCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UGC CC---UU-CG 5881 CC--GACA-- GG-CG----U GGGUA--ACC --CG-C-UGA -AC-CC-CG- CU-C-G-UG- 5941 AUG-GGGAU- UGG---GG-A U-UGCAACU- G-UUUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-ACG-GG-U CACAAG--CU C-GUGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-CU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UCG-G-C- -CCCGCCGG- --AGUC---- ---------- 6181 ---------- ---------- ---------- ----UUCA-- --CG-GCUC- ----U----- 6241 ---------- -----GGCGU -GC--GUG-C C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-C-UA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAAUCGGA 7861 UCCCCGGGUA CC // LOCUS Lptr.aepyp 7872 bp RNA RNA 02-JUL-1998 DEFINITION Lampetra aepyptera (least brook lamprey). REFERENCE 1 AUTHORS Stock,D.W. and Whitt,G.S. TITLE Evidence from 18S ribosomal RNA sequences that lampreys and hagfishes form a natural group JOURNAL Science 257, 787-789 (1992) COMMENT Corresponding GenBank entry: M97573|g175002 biol_source= white skeletal muscle common_name= least brook lamprey BASE COUNT 412 a 427 c 530 g 415 u 6088 others ORIGIN 1 .........N ACCUGGU-UG A--U-CC-UG CC-AG-UA-G C--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUGCGU ---------- -------GCA AACGGAUG-- 121 UUA------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GCUCGACCGU UG-------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG ACGA------ ---------- ---------- 361 --G-CGC--- ----UGACC- ---------- ---------- ---------- -----UCCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGAU 541 ----GC-GU- ---GCAC-UU -AUU--AGAC CAAA------ --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ----UCCGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCGGA--- 901 ---------- ---------- ---------- ---------- ---------- ---------C 961 GCU--U-UGG U---GACUCU G--G-AUAAC CACGUGGGCA GA-----UC- G----CA--- 1021 -CG----GC- ---------C CUGGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-CGUA -UCU-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUUACG- -AUGGCA-GG -CUCC-GUG- CCU----ACC A-UGGU-GA- 1201 CCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACU--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGCUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----AAG--- -GGGC---UU 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGUG 2641 ---------- -------UGU CA-CU-GCCU ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------GU C-C------C GG-------- -C-CC----- ---CCACCUC UCG-GUGCU- 2821 CC----CCG- GAU-GCUC-- -UUGGUU--- GAG-U--GU- C-CUGUG--- GG--GGU--C 2881 C--GA---AG --CGUUUACU UUG-AGAAAA U-UGGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-GCA----- ---------- ---------- ---------- ---CGCCU-- --GAACAG-U 3001 G-CAGCU-GG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACG---GAG G-CCA-UGAU UAAGA-GGGA C-UGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GUGC-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGG-C 3481 GC-A-AG-AC GAGC-GAAAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUCU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCGGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCC- G--AC-CA-U -AAACGAU-G -CCAACU--- GGC------- 3661 ----GAU--- ----CAGGCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CU --G-CCUG-- ----GCA--- --------GC U-UGC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CG-G-AGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUCGAUU-C- CGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- GUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUCAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CC-G A-CGU-GCUA A-CUA-G-CU -AC-GCGGC- --CC-CU-GU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCG G----UCGG- 5521 -CGUU----- -G---A-G-- ------CU-U C-UU-AGAGG -GA---CGA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUUCA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AUGGA-U-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CGC CC---UU-CG 5881 CC--GGCA-- GG-CG----U GGGUA--ACC --CG-U-UGA -AA-CC-CA- UU-C-G-UG- 5941 AUA-GGGAU- UGG---GG-A U-UGGAACU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU U-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UUG-G-C- -CCCGCUGG- --GGCAG--- ---------- 6181 ---------- ---------- ---------- ----GCGA-- --CU-GCCC- ----U----- 6241 ---------- -----GGGGG -UG--C-G-C U-GA---GAA G---ACGA-U CGAA-CUU-G 6301 A-C-UG-UCU AG-AGGA--- AGU-AAAAG- UCGU...... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Brnc.flori 7872 bp RNA RNA 02-JUL-1998 DEFINITION Branchiostoma floridae (Florida lancelet (amphioxus)). REFERENCE 1 AUTHORS Stock,D.W. and Whitt,G.S. TITLE Evidence from 18S ribosomal RNA sequences that lampreys and hagfishes form a natural group JOURNAL Science 257, 787-789 (1992) COMMENT Corresponding GenBank entry: M97571|g173977 tissue_type= muscle common_name= Florida lancelet (amphioxus) BASE COUNT 417 a 437 c 515 g 407 u 6096 others ORIGIN 1 .........N NCCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A CGU-GCAAGU ---------- -------UUA AACUGUCU-- 121 ---------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UUGA-UC-- 241 GUCACAUCCU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGG AAGAA----- ---------- ---------- 361 --G-CGCC-- -----GACC- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGUCU 541 ---GGC-GU- ---GCAU-UU -AUC--AGAC CAAG------ --ACCAAC-- ---------- 601 ---------- ---------- ---------- ---------- ----CCGGGG UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCCGG--- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 CCU--U-UGG U---GACUCU G--G-AUAAC CCAGCCGA-- -------UC- G----CA--- 1021 -CG----GU- ---------C UUCGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CAGA -UCA-UUC-G AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -UUCU-GUG- CCU----ACC A-UGGU-GG- 1201 CAA-CGGG-U -GACGGGGAA U-CAGGGUUC -GGUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACU--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-GCC---- -C--CG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGGGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-G-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----ACC--- -GGGC---UU 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GCGA ------GGCG 2641 ---------- -------UGU CA-CU-GCUC ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- U-C------C CGG------- -C-CC----- ----UCCCCG CCG-GAUUC- 2821 UC----CUU- GGU-GCUC-- -UUAACU--- GAG-U--GC- C-UCG----- GG--GUG--C 2881 C--GG---AG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UGG----- ---------- ---------- ---------- ---CGCCU-- --GAAUAG-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--C GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACG--UGAG G-UAA-UGAU CAAGA-GGGA C-GGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-G G-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GC-A-AG-AC GAAC-CACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUGUGG-GCG -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUCAC- A--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----GAU--- ----CCGCCG G----C---- -GU-UA---- ---------- --CUUCGA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----CC --G-AUGG-- ----GCA--- --------GC U-CCC----- 3901 ---------- GGGAAA-CC- U----GAG-U UUU-CGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGGA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-CUAAU C--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-CUA-G-UU G----CGGC- -----GA-UC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CCGCG C----GAUC- 5521 -GGCC-G--- --C--A-A-- ------CU-U C-UU-AGAGG -GA---CAG- C-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AGUAA-GC-C G-G-ACG-AG -AUGGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CAAU-GA -AGGCA-U-C 5761 AG-CG-AG-U CUU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCG CC---UU-CG 5881 CC--GAAA-- GG-UG----C GGGUA--ACC --UG-C-UGA -AC-CG-CC- UU-C-G-UG- 5941 CUA-GGGAU- CGG---GG-A U-UGCAAUU- A-UCUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-G-A U-GCG-UG-U CAUCAG--CG C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGGU-CAG -UCGA----- --UCG-G-C- -CCCUCUCG- --GGCCG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GUCU- ---------- 6241 ---------- -----GGAGG -AG--C-G-C C-GA---GAA G---CCGA-U CAAA-CUU-G 6301 A-C-CA-UUU AG-AGGA--- AGU-AAAAG- UCGU...... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Hrdm.momus 7872 bp RNA RNA 02-JUL-1998 DEFINITION Herdmania momus (sea squirt). REFERENCE 1 AUTHORS Degnan,B.M., Yan,J., Hawkins,C.J. and Lavin,M.F. TITLE rRNA genes from the lower chordate Herdmania momus: structural similarity with higher eukaryotes JOURNAL Nucleic Acids Res. 18, 7063-7070 (1990) COMMENT Corresponding GenBank entry: X53538 cell_type= sperm common_name= sea squirt NB: Sequence contains an entire rDNA tandem repeat BASE COUNT 441 a 399 c 509 g 454 u 6069 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-G UGA-UAUGCU -UGU-CUC-A 61 -A-GAUUAA- -GCCAUGC-A GGU-----GU ---------- -------CGA GUUGUC---- 121 GUA------- ----AAGUGA A--------- ---------- ---------- ---------A 181 C-G-----UC GAAACGGC-U -C-AUUA-AA -UCAG-UCUU -GG-UUUAU- -UUGG-UC-- 241 UUGUGAGCGA ---------- ---------- --------AG -U-G--AUAA C-U-GUGG-- 301 -G-CU--CUA GAGCUAA-U- --ACAUGCCA UCAA------ ---------- ---------- 361 --G-CGCC-- -----GAC-- ---------- ---------- ---------- -----UUCGG 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAG- 541 ---GGG-CU- ---GCUU-UU -AUC--AGAU CAAAA----- --ACCCUCCC ---------- 601 ---------- ---------- ---------- ---------- ------GCCG CUAUC----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CGGC----- 901 ---------- ---------- ---------- ---------- ---------- --------CC 961 AGG--UCCGA U---GACUCU G--G-AUAAC CAUAUGCGAG A------UC- G----CA--- 1021 -UG----GU- ---------U CUUGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGAA -UCA-UUC-A AGUGUUCUAC 1141 --CCU-AUC- AA-CUUUUCG -AAGGUA-CG -UUUA-GUG- CCU----ACC U-UUGU-GAA 1201 UAA-CGGG-U -GACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AU-UCCCG ----ACA--- 1801 -C--GGGA-G GUA-GUGAC- GA-------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- --UAAC---G AG-GCU---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA UUCU-AAA-C UCUUA----- -------ACG A-GU-AUCC- UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GCCA-GCC -GCGGGUAA- UUCCGAC-U- CCAAC-AG-U 2101 GUAU-GCU-- AAAGUGGU-U --GCGGUU-- ----GAAAAG -UCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G-G--G-U-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- GGGUGUC--- -GUCGG---- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- UC----GCAA ------GGCG 2641 ---------- -------UGU CA-CU-GG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------CG G-C------G GCGCUG---- -C-CU----- -----CGUAU UCG-GUUCU- 2821 UC----GUC- GGU-GCUC-- -UUGACU--- GAG-U--GU- C-GGC----- GC--UGG--C 2881 C-GGA---AA --AGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-G------- ---------- ---------- ---------- ---UGCCU-- --GCAUA--U 3001 G-UUGCA-UG G-AAUAAU-G GAAU-A-GA- C-CU-CCUU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AGCA--CGAG G-UAA-UGAU UAAGA-GAGA C-AGAC---- ---------- 3421 UUUUCG-UC- CG--UA-C-U CUGC-C-G-U U-A-GAG-GU GAAA-UUC-U UGGA-CGG-C 3481 GG-A-AG-AC GAACCUACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--UU-UA A-UC-AAGGA G-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUCU- G--AC-UA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CGGGAG G----C---- -GU-U----- ---------- --ACCAUGCA 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CU --U-CCCG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -AAG-UACGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCA--CA -CGG-G---- -AACU-A-CC --GGCC---- ---------- ---------- 4561 ---------- ---------- ---------- ----G-AC-A CA-G-GAAGA AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GGC A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-CU-G G-CAU-GCUA A-AUA-G-UU A-C-GCGAC- -----CU-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----UUCGG U-----CGG- 5521 -CGUC----- --U--A-A-- ------CU-U C-UU-AGAGG -GA---CUA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUUA-GC-C A---ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AUGAA-G-C 5761 AG-CG-UG-U GUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UAA CC---UA-GG 5881 CC--GAAA-- GG-UC----C GGGUA--ACC --CG-U-UGA -AC-CC-CA- UU-C-G-UG- 5941 AUU-GGGAU- AGG---GA-C U-UGCAAUU- A-U-UCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACC-A- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-CCU -UGGA----- --UUG-G-C- -CCUGUCGC- --GGCUG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CG-GCCG- ----G----- 6241 ---------- -----GGCGG -GA--C-G-C C-GA---GGA G---ACGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UUAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Spis.solds 7872 bp RNA RNA 02-JUL-1998 DEFINITION Spisula solidissima (Atlantic surf clam). REFERENCE 1 AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. in press (1993) COMMENT Corresponding GenBank entry: L11270|g393263 tissue_type= muscle common_name= Atlantic surf clam BASE COUNT 438 a 455 c 522 g 426 u 6031 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CGCCUCAACA 121 ---------- ----CGGCGA G--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCAA CACA------ ---------- ---------- 361 --G-CUCC-- -----GACCC ---------- ---------- ---------- -----GCGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----GGGGA- 541 ---AGA-GC- ---GCUU-UU -GUUA--GCC CAAA------ --ACCAA-UC ---------- 601 ---------- ---------- ---------- ---------- CGGGUUCGCC CGUCAAAC-- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGC-GGCCC 901 G--------- ---------- ---------- ---------- ---------- ------GCCC 961 AAC--G-UGG U---GACUCC --GA-ACAAC UUUGUGCCGA -------UC- G----CA--- 1021 -UG----CC- ---------C UAGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GGCGG- -C-GA-CGCA -UCU-UUC-A AGUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGCU-AUG- CCU----ACC A-UGGU-GA- 1201 UAU-CGGG-U -AACGGGGAA U-CAGGGUUC -GGUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAUA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-UCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GUG ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCUU ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCG- CC----UCGC ------GGCG 2641 G--------- ---------U CA-CU-GC-- -UCGU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----C CACGCCGGUU GUC-CGCG-- 2821 CC-----UU- GGU-GCUC-- -UUGAUU--- GAG-U--GU- C-UC------ GG-CCGG--C 2881 C--GG---AA --CGUUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 C-AUUGC--- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GCUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AGCU--CGAG G-UAA-UGAU UAAUA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACAG C-GAUA--GC A---UUUG-C C-AAG----- ---CAUGCUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- GUC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GA C-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GUGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-UUAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-CU ------CGGG -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --CCUUCGCG A-----GUC- 5521 -CCCG----U C----A-G-- ------CU-U C-UU-AGAGG -GA---CAG- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACAUGCGC UA-CAAU-GA -AUGGA-U-C 5761 AG-CG-UG-C GUCUCG---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------G-GU 5881 CC--GAAA-- GG-AU----C --GGGAAACC --CG-U-UGA -AC-CC-CA- UU-C-G-UA- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-G-G C-GCG-AG-U CAUCAG--CU C-GCGU-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UC--GCUC-C A-GU-U-AA- 6121 UGAGCU-CUU -CGGA----- --UUG-G--- --ACCCGUG- --GGCCCGCU ---------- 6181 ---------- ---------- ---------- ----UCGC-G GCGG-GCC-- ----G----- 6241 ---------- -----UCGGU --G--G---C C-GA---GAA G---AUGC-G CAAA-UUG-A 6301 C-C-GG-GGU AG-AGGU--- CGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Crst.virgi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Crassostrea virginica (eastern oyster). REFERENCE 1 AUTHORS Littlewood,D.T.J., Ford,S.E. and Fong,D. TITLE Complete nucleotide sequence of the small subunit ribosomal RNA gene of the American oyster Crassostrea virginica (Gmelin) and a comparison with similar sequences from other bivalve molluscs JOURNAL Nucleic Acids Res. 19, 6048-6048 (1991) COMMENT Corresponding GenBank entry: X60315|g7131 cell_type= hemocyte and sperm dev_stage= adult common_name= eastern oyster BASE COUNT 456 a 414 c 497 g 449 u 6056 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACUCUUGCA 121 ---------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCAU- -UAGA-UG-- 241 GUACAAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA CGAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGUC GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------UCC 961 GUU--U-UGG U---GACUCU --GG-AUAAC UUUGAGCAGA -------UC- G----CA--- 1021 -CG----GG- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----CCCGG- -C-GA-CGUG -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUGUCG- -AUGGUA-CG -UGCU-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --CUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------GCG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GCGA-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGCUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCUG ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCA- CC----UCGU ------UGUG 2641 G--------- ---------U UA-CU-GC-- -CUGU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------U CUG------- AC-CC----- -AACCUCUCG GUU-GUAAA- 2821 CC----CUU- GGU-GCUC-- -UUGAUU--- GAG-U--UG- C-UUC----- GG-GUGG--C 2881 C--GA---AA --CUUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-AUU----- ---------- ---------- ---------- ---CGCCUG- --CCACAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACA--CGAG G-UAA-UGAU UAAGA-GGGA C-UGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-G GCGG-G-G-U U-A-GAG-GU GAAA-GGC-U UGGAUCCU-C 3481 GC-C-AG-AC GGCC-UACAG C-GAAA--GC A---UUUG-C C-AAG----- ---CAUGUUU 3541 U-C--AU-UA G-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----AAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGA-- ----GCA--- --------GC C-CCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-A-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AACCU-ACUA A-AUA-G-UU ------CACC -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----CUAUGC U-----GUC- 5521 -GGUG----- C----A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AA-CA-GG-U AUCUG----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UG-GC 5881 CC--GAAA-- GG-GU----C --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-U G-UGUAAUU- A--UCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AA-U CAUAAG--UU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGCC-CCU -UGGA----- --CUG-G--- UCC-CGAC-- ---GGC-CG- ---------- 6181 ---------- ---------- ---------- ----GCAA-- CGCG-UUUU- --C-G----- 6241 ---------- -----UCGCU GGU--G---C C-GG---GAA G---AAGG-G CAAA-CUG-U 6301 A-C-UU-UCU AG-AGGU--- CGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Sagt.elega 7872 bp RNA RNA 02-JUL-1998 DEFINITION Sagitta elegans (arrow worm). REFERENCE 1 AUTHORS Telford,M.J. and Holland,P.W.H. TITLE The phylogenetic affinities of the chaetognaths: A molecular analysis JOURNAL Mol. Biol. Evol. 10 (3), 660-676 (1993) COMMENT Corresponding GenBank entry: Z19551|g10121 geog_source= coastal waters around Friday Harbor, U.S. common_name= arrow worm BASE COUNT 419 a 493 c 579 g 417 u 5964 others ORIGIN 1 .......... .......... .......... .......... .......... .........A 61 AA-GAUUAA- -GCCAUGC-A AGU-GUCAGC ---------- -------ACA UGCCGCCAAA 121 ---------- ----UGGCUA A--------- ---------- ---------- ---------G 181 C-C-----GC GAA-CGGC-U -C-AUUA-AA -UCAG-CUAU -GG-UUCCU- -UAGA-UC-- 241 UUCGGCCGCG UCCUCGGACG UGGCG----- --------UU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCU GACG------ ---------- ---------- 361 --C-CGUC-- -----GGGNC CC-------- ---------- ---------- -----GCGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GGUCGC- 541 ---GAC-GU- ----CU--UU -AUGC--CGU CAAG------ --ACCAG-C- ---------- 601 ---------- ---------- ---------- ------CGG- CGCACGCGUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACGUG-GC 901 GGCC------ ---------- ---------- ---------- ---------- ------GACC 961 UCU--U-UGA U--GAACUCU --GG-AUAAC UCCACUUGA- -------CC- G----CA--- 1021 -CG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GG-CUGA -UCU-AAU-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -ACGGUA-GG -AGCC-CGG- CCU----ACC G-UGGU-GA- 1201 UAA-CGGG-U -AGCGGGGAA U-AAGGGUUC -UAUA-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAU------- ----CAAUAA -CGAU----- -GC-GG---- 1861 -GACUC---- --UGAC---G AG-G-C---- -U-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGGGC----- 1981 ------G-UA AUUU-AAAUC CUUCG----- -------ACG A-GG-AUCAA GUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCACU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- UC-GUGUCG- ---------- 2521 GCGUCU-UUG UUGCUUCUUC UGCGUUUCGG CGUCGG---- -----AGUUG UGGCAGGUCG 2581 UCGGCCCUGU CGG-CGAGGU CCC------- --------A- CC-----UUU ------GGU- 2641 ---------- ---------- GG-GU-NU-- -CCACCUCGC UC-------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------G UGC------A GC-CC----- --GCCGUCGC GUU-U----- 2821 GG----GCG- GGU-GUCC-- -UUAAUU--- GGA-U--GC- CCGC------ UC---UC--G 2881 A--ACGUGGC -CCGUUUACC UUG-AACAAA U-CGGAGU-G CUC-A-AA-G -C-AGGC--- 2941 U-CUUCAU-- ---------- ---------- ---------- ---CGCUC-- --GAACGG-U 3001 A-GCGCA-UG G-AAUAAU-G GAAG-AGGA- C--C-GGCU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC GC--UUC--U GUUGGUCUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------ACGG AGGC----AG G-UAA-UGAU CAAGA-GGUA C-GGAU---- ---------G 3421 GGGGCA-GA- GG--UA-U-G GCUC-G-G-C G-A-GAG-GU GAAA-UUC-U UGGACCCU-A 3481 GC-C-AG-AC CCUC-GAGAG C-GAAA--GC A---UCUG-C C-AAA----- ---GAUGUUU 3541 C-C--AU-UG A-UC-AA-GA A-CGAAA--G UCGCGG-GAU -CGAA-CGGG --AUUA-G-A 3601 UAC-C-CC-- GGUAGUCGC- G--AC-CG-U -AAACGAU-G -CCAACC--- GGG------- 3661 ----AAU--- ----UCGGCG G----C---- -GU-UA---- ---------- --CUUCCA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----CC --G-UCGA-- ----GCG--- --------CC C-GACCC--- 3901 ---------- GGGAAA-CC- GA---GAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AACCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-CGAGG AUU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUCGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA--CG A-UCUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-CC-C AACCU-GCUA A-CUA-G-CC C-----UC-- -----GG-GU 5221 CC-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -UGCUUCUGU U--GGGCCC- 5521 ---GA----- C-G-GA-AUG AUUCG-CU-U C-UU-AGAGG -GA---CUC- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GNCUA-GC-C G-C-ACG-AA -GGGGGG-N- GAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CUG -CACGCGCGC UA-CACU-GA -AGGCA-U-C 5761 AG-CG-WG-C GCUUUGUCCG UU-------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GC 5881 CU--GAAA-- AG-GC----U --GGGUAACC --CG-C-UGA -AC-CG-CC- UU-C-G-UG- 5941 CCU-GGGAU- AGG---GA-U U-UGCAAUU- A-UCUCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-G-G C-GCG-AG-U CAUCAG--CK C-GCGU-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UC--GAAC-G A-UG-U-AG- 6121 UGAGGU-CCU -CGGA----- --CUG-G-CA UGUA-CUCGG AAGCCGGG-- ---------- 6181 ---------- ---------- ---------- ----UUCG-- -CUC-GGU-A GAA-G----- 6241 ---------- -----AGCUU GUU--U-G-C C-GG---GAA G---AGAA-C CAAA-CUG-A 6301 A-U-CG-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Myti.eduli 7872 bp RNA RNA 02-JUL-1998 DEFINITION Mytilus edulis (blue mussel). REFERENCE 1 AUTHORS Rice,E.L. TITLE Untitled JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: L24489|g476709 common_name= blue mussel BASE COUNT 456 a 418 c 500 g 452 u 6046 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACUUUUACA 121 ---------- ----UAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGAAG CACG------ ---------- ---------- 361 --G-CUCU-- -----GACC- ---------- ---------- ---------- -----UCGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---AGA-GC- ---GCGU-UU -AUUA--GAU CAAA------ --ACCAGU-- ---------- 601 ---------- ---------- ---------- ---------- ---CGGGUCC GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGCCCG-- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 CGG-AU-UGG U---GAGACU --GG-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -CG----GC- ---------C UCGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGAU-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAACC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCUG ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCG- AC----GCCU ------GUCG 2641 G--------- ---------U UA-CU-GC-- -CUGCU---- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----- -ACCUCCCGG UUU-UUUCG- 2821 CC----CUU- GGU-GCUC-- -UUGACU--- GAG-U--GU- C-UC------ GG-GUGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAA- U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AUAU---- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GCUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AGCU--CGAG G-UAA-UGAU UAAGA-GGGA C-UGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U ACGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GU-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---CAUGUUU 3541 U-C--AU-UA G-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCAG-- ----GCA--- --------GC C-CCC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-ACUA A-AUA-G-UU ------CGCU -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -CCCCAUUUG C-----GUC- 5521 -GGCG----- C----A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U CUUUG----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UU-GC 5881 CU--GGAA-- AG-GU----C --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGGC-G U-UU-U-AG- 6121 UGAGCG-CCU -CGGA----- --UUG-G--- --ACCCGGA- -AAUGGUUG- ---------- 6181 ---------- ---------- ---------- ----GCAA-- CAAC-CGUA- ----C----- 6241 ---------- -----C-GGU -GU--G---C C-GA---AAA G---ACGC-G CAAA-CUU-G 6301 A-A-CG-CCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plcp.magel 7872 bp RNA RNA 02-JUL-1998 DEFINITION Placopecten magellanicus str. Placo-1 (sea scallop). REFERENCE 1 AUTHORS Rice,L. TITLE Nucleotide sequence of the 18S ribosomal RNA gene from the Atlantic sea scallop Placopecten magellanicus (Gmelin, 1791) JOURNAL Nucleic Acids Res. 18, 5551-5551 (1990) COMMENT Corresponding GenBank entry: X53899|g10006 tissue_type= adductor muscle common_name= sea scallop isolate_name= Placo-1 BASE COUNT 457 a 407 c 488 g 462 u 6058 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACUUUUUGA 121 ---------- ----UGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACGAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCAA AAAG------ ---------- ---------- 361 --G-CACC-- -----GAC-- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GGA- 541 ---GGU-GC- ---GAUU-UU -AUCA--GUC CAAA------ --ACCA--AU ---------- 601 ---------- ---------- ---------- ---------- -----CGGUC GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------UCA 961 CUC----UGG U---GAAUCU --GG-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -CG----GC- ---------C CUAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AAUGU-CUGA 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGCU-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGAGAA U-CAGGGUUC -GGUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAACC CUUUA----- -------ACG A-GU-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-GUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCUU ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCA- CU----CCUU ------GGUG 2641 G--------- ---------C UA-CU-GC-- -UCGU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----- -----ACCUC CCG-GUUUUA 2821 CC----CUU- GGU-GCUC-- -UUGAUU--- GAG-U--GU- C-UCG----- GG--UGG--C 2881 C--GG---AA --CAUUUACU UUG-AAAAA- U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AUU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--UGAG G-UAA-UGAU UAUGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U ACGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GU-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA U-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UAC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-UU ------CACC -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --CCGCUCUG C-----GUC- 5521 -GGUG----- C----A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU A-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AA-CG-UG-C UCUUAU---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GC 5881 CC--GGAA-- GG-GU----U --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- CCU-ACCGA- UU--GAUU-G G-UU-U-GG- 6121 UGAGCU-CCU -CGGA----- --UUG-G--- UCCCGACA-- --CGGGGG-- ---------- 6181 ---------- ---------- ---------- ----GCAA-- -CCC-UCG-- ----A----- 6241 ---------- -----GUCGG UGC--G---C C-GA---GAA G---ACGA-G CAAA-CUU-G 6301 A-U-UA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Acnp.japon 7872 bp RNA RNA 02-JUL-1998 DEFINITION Acanthopleura japonica (chiton). REFERENCE 1 AUTHORS Winnepenninckx,B., Backeljau,T. and De Wachter,R. TITLE Complete small ribosomal subunit RNA sequence of the chiton Acanthopleura japonica (Lischke, 1873) (Mollusca, Polyplacophora) JOURNAL Nucleic Acids Res. 21, 1670-1670 (1993) COMMENT Corresponding GenBank entry: X70210|g296407 geog_source= Cape d'Aguilar, Hong Kong common_name= chiton BASE COUNT 449 a 406 c 498 g 462 u 6057 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA GACUUUCACA 121 ---------- ----UAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GA-UUUCU- -UAGA-UC-- 241 GUACACUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGACG UUCA------ ---------- ---------- 361 --G-CUCC-- -----GACCU ---------- ---------- ---------- -----UUUUG 421 C--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----AGGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAG------ --AUCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 CUG--U-UGG U---GAUUCU --GA-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C ACGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AGUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGAU-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GAUCU---- --CUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GUU ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCUG ---------- 2521 GAGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCG- CC----UCGC ------GGCG 2641 G--------- ---------C UA-CU-UC-- -CCGCU---- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----- ----ACCAUC GGG-UUUUC- 2821 CC-----UU- GGU-GCUC-- -UUGACU--- GAG-U--GU- C-UC------ GG-GGGG--C 2881 C--AG---AA --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-CCGU---- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAG-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAGU--CGAG G-UAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U ACGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GU-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --UUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUG-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-AUUA A-AUA-G-UU ------CGCC -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --CCCUGAUG C-----GUC- 5521 -GGCG----C C----A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AA -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U GUCGUU---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------G-GC 5881 CC--GGAA-- GG-GC----U --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GMGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAG-CCC -CGGA----- --UUG-G--- UCCCGGCA-- --UGGGGG-- ---------- 6181 ---------- ---------- ---------- -----NAA-- -CCU-CCG-- ---------- 6241 ---------- ------CCGG UGC--G---C C-GA---GAA G---UUGU-U CGAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Lclr.kambe 7872 bp RNA RNA 02-JUL-1998 DEFINITION Limicolaria kambeul (pulmonate snail). REFERENCE 1 AUTHORS Winnepenninckx,B., Backeljau,T., Van de Peer,Y. and De Wachter,R. TITLE Structure of the small ribosomal subnunit RNA of the pulmonate snail, limicolaria kambeul, and phylogenetic analysis of the metazoa JOURNAL FEBS Lett. 309, 123-126 (1992) COMMENT Corresponding GenBank entry: X66374|g9525 common_name= pulmonate snail BASE COUNT 444 a 436 c 508 g 450 u 6034 others ORIGIN 1 .........U AUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------UCA CACUGUCUCA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UCGA -GG-UUCCU- -UAGA-UG-- 241 ACACGAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCUU ACCAA----- ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----CUCGC 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GUU CAAA------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------C GUCGUUGCCC UUCAGC---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGGC-GCGG 901 CG-------- ---------- ---------- ---------- ---------- ---------U 961 CCA-AC-UGG U---GACUCU --GG-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C UUCUGU---- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-AUGUCG- -AUGGUA-CG -UGAC-AUG- CCU----ACC A-UGUU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC---- A-ACUU-ACC C-AC-UCC-G ----GCA--- 1801 -C-GGAGG-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAACC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-GCG ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGGCGG ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCG- GC----UCGC ------GCCG 2641 U--------- ---------U CA-CU-GC-- -CCGUUGUCC U--------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- CC-CU----- ACCGUCUGCC GGC-UCUCU- 2821 CC---CGCG- GGU-GCUC-- -UUCGCU--- GAG-C--GU- C-CC------ GG-GUGG--C 2881 C--GG---CG --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-CCAGC--- ---------- ---------- ---------- ---UGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGUUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--GGAG G-UAA-UGAU UAACA-GGGA C-AAAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GC-A-AG-AC GAGC-UACUG C-GAAA--GC A---UUUG-U C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GCG -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAU--- ----CCGCAG G----A---- -GU-UG---- ---------- --CUUCGA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --U-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-AUUA A-AUA-G-UU ------CGCC -----GG-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --UCCUCGAU C-----GCC- 5521 -GGCG----- C----A-A-- ------CU-U C-UU-AGAGG -GA---CGA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A---ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACACACGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-G AUGCCU---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UG-GC 5881 CC--GAAA-- -G-GU----U --GGGAAACC --CG-U-UGA -AU-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GAG-AG-U CAUAAG--NU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-AUCGA- UU--GAGC-G G-UU-C-AG- 6121 UGAGGG-CCU -CGGA----- --UUG-G-UC U-CGGU--C- --UGGUAC-- ---------- 6181 ---------- ---------- ---------- ----GCAA-- -GUG-CUGG- ----C----- 6241 ---------- ------ACCG -CU--G-G-C C-GA---GAA G---AAGC-U CGAA-CUC-G 6301 A-U-CG-CUU GG-AGAA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Psto.eilhr 7872 bp RNA RNA 02-JUL-1998 DEFINITION Prostoma eilhardi (freshwater nemertean (unsegmented worm)). REFERENCE 1 AUTHORS Giribet,G., Carranza,S., Baguna,J., Riutort,M. and Ribera,C. TITLE First molecular evidence for the existence of a Tardigrada + Arthropoda clade JOURNAL Mol. Biol. Evol. 13 (1), 76-84 (1996) COMMENT Corresponding GenBank entry: U29494 common_name= freshwater nemertean (unsegmented worm) BASE COUNT 446 a 414 c 509 g 464 u 6039 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACG AACUUUUACA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUUAU- -UAGA-UG-- 241 GUGCUAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGA CAAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----CUCGU 421 U--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAG------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ------CGGU UUCGUUCCCU 661 CGGGUUCGU- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 GGA--U-UGA U---GACUCU --GG-AUAAC CUUCGCCGA- -------UC- G----UA--- 1021 -UG----GC- ---------C CUGCC----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGA- -C-GAACGCA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -UUGGUA-GG -UGAU-UUG- CCU----ACC A-AGGU-GU- 1201 UUA-CGGG-U -AACGGGGGA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCUU- ---AGCAC-- 1801 ---GAGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUCU-AAACC CGUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGCUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAGUC 2221 --G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGCG--- -GCAG----- 2521 UGGUU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- GU----UCCG U-----GCCG 2641 ---------- ---------A UA-------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------CU G-UUGGU--C GCC-G----- GC-CU----- -----CCACG CCG-GUCGUC 2821 UU-----UC- GGU-GCUC-- -UUAACU--- GAG-U--GC- C-UU------ AA-GUAG--C 2881 C--GG---GC -AGGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AG-G -C-AGGC--- 2941 U-UCACA--- ---------- ---------- ---------- ---CGCCU-- --GAAUGA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--GGAG G-UAA-UGAU UAAUA-GGGA C-GGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-G-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GGAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UG A-UC-AA-GA G-CGAAA--G UCAGAG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUCU- G--AC-CA-U -AAACGAU-G -CCGACU--- AGC------- 3661 ----GAU--- ----CCGGCU C----C---- -GU-UG---- ---------- --CUUUAUA- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------A -GAC----UG --G-CCGG-- ----GCA--- --------GC U-CCC----- 3901 ---------- -GGAAA-CC- A----AAG-U UUA-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GAAG-C-- CU-GCG--N- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-UAAGG AUU-G-ACA- 4621 GA--UUGAAA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCG-GCUA A-CUA-G-UC ------CGUC -----GA-UG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --CCUAACUG U----CGUC- 5521 -GGCG-CAUA UC---G-A-- ------CU-U C-UU-AGAGG -GA---CCA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-GCG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-C-G -CACGCGCGC UA-CACU-GA -AGAAA-U-C 5761 AA-CG-UG-U CUUCUCAA-- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------G-CC 5881 UC--GAAA-- GG-GG----U --GGGUAAUC --CG-U-UGA -AC-CU-UC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G --GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC ---GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --CUG-G--- UGGCGUUC-- --GCAUUC-- ---------- 6181 ---------- ---------- ---------- --CCUCGU-- -GGUCUGU-- --GAGC---- 6241 ---------- -------GUC -UU--C-G-C C-GG---GAA G---ACGA-U CGAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA ~~~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Phrn.archi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Phoronis architecta (phoronid worm). REFERENCE 1 AUTHORS Mackey,L.Y., Winnepennickx,B., Backeljau,I., De Wachter,R., Emschermann,P. and Garey,J.R. TITLE 18S rRNA suggests that Entoprocta are protostomes, unrelated to Ectoprocta JOURNAL J. Mol. Evol. 42, 552-559 (1996) COMMENT Corresponding GenBank entry: U36271 common_name= phoronid worm BASE COUNT 438 a 383 c 482 g 431 u 6138 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... ....AUGC-A UGU-CUAAGU ---------- -------ACA UACCUUCACA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-G 241 AUACACUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA UAAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGCU CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 CUG--U-UGG U---GACUCU --GG-AUAAC UUUGGGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C UCGA------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUGUCG- -AUGGUA-UG -UGAU-AUG- CUU----ACC A-UGGU-UA- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-UCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAA------ AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --CUAGGCUU -GCGG----- 2521 -------UC- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC-----CUC ------GCG- 2641 ---------- ---------- ---------- -UUACUGC-- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------UC G-U------C CUG------- GC-CU----- -----ACCUC CCG-GUUUUC 2821 CC-----UU- GGU-GCUC-- -UUAAGU--- GAG-U--GU- C-UC------ GG-GUGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-GUU----- ---------- ---------- ---------- ----GCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--UGAG G-UAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U ACGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GU-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-CGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAGCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-U- ---------- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCC A--------- 5521 ---------- -------A-- ------CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-- G-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGUGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-C GUCUAC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------G-GC 5881 CU--GGAA-- AG-GU----U --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- A-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAC-G G-UU-U-AG- 6121 UGAGAG-CCG -CGGA----- --CUG-G--- UCCCGG-CAG --AG-UGG-- ---------- 6181 ---------- ---------- ---------- ----GAAA-- -CCAUUGA-- ----G----- 6241 ---------- ------CCGG -UG--U-G-C C-GG---GAA G---UCGC-U CAAA-CUU-G 6301 A-U-CG-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-C-U- GCGGAAG-GA UCGGAUCC~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Ling.lingu 7872 bp RNA RNA 02-JUL-1998 DEFINITION Lingula lingua (brachiopod (=lamp shell)). REFERENCE 1 AUTHORS Mackey,L.Y., Winnepenninckx,B., De Wachter,R., Backeljau,T., Emschermann,P. and Garey,J.R. TITLE 18S RNA suggests that Entoprocta are protostomes, unrelated to Ectoprocta JOURNAL J. Mol. Evol. 42, 552-559 (1996) COMMENT Corresponding GenBank entry: X81631 common_name= brachiopod (=lamp shell) BASE COUNT 457 a 395 c 490 g 468 u 6062 others ORIGIN 1 .........N NNCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACUUUCACA 121 ---------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-GA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA CCAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 CUA--U-UGG U---GACUCU --GG-AUAAC UUUGGGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C UCGA------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGAU-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACU- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --AUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-GUU ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UAGGCUA ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCA- CC----UCGC ------GGUG 2641 G--------- ---------U UA-CU-GC-- -UUGU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----- -----ACCUC CCG-GUUUU- 2821 CC----CUU- GGU-GCUC-- -UUGAUU--- GAG-U--GU- C-UC------ GG-GUGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 A-AUU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--UGAG G-UAA-UGAU UAAUA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GC-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GUGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-UU ------CACC -----GA-UC 5221 C--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUA U---GGGUC- 5521 -GGUG----- U----U-A-- ------AC-U U-CU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CUG -CACACGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U GUCUAC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------G-GC 5881 CC--GGAA-- GG-GU----U --GGGUAACC --CG-U-UGA -AU-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGUAAUU- A-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGGU-CCU -CGGA----- --UUG-G--- UCCCGGCA-- --UGGUGG-- ---------- 6181 ---------- ---------- ---------- ----GCAA-- -CCA-UCG-- ----C----- 6241 ---------- -----GCCGG UGU--G---C C-GA---GAA G---ACGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Tbrt.trnsv 7872 bp RNA RNA 02-JUL-1998 DEFINITION Terebratalia transversa (brachiopod (=lamp shell)). REFERENCE 1 AUTHORS Halanych,K.M., Bacheller,J.D., Aguinaldo,A.M., Liva,S.M., Hillis,D.M. and Lake,J.A. TITLE Evidence from 18S ribosomal DNA that the lophophorates are protostome animals JOURNAL Science 267 (5204), 1641-1643 (1995) COMMENT Corresponding GenBank entry: U12650|g717038 common_name= brachiopod (=lamp shell) BASE COUNT 435 a 396 c 478 g 442 u 6121 others ORIGIN 1 .......... .......... .......... .......A-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACUUUCACA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAAUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UCGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GAU CAAG------ --ACCAAU-- ---------- 601 ---------- ---------- ---------- ---------- -------CGG CUCGCCC--- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCG------ 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 CCA-AU-UGG U---GACUCU --GG-AUAAC UUUGGGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-CG -UGAC-AUG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-AUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACU- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCUG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GUU ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UAGGCUG ---------- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC----UCGC ------GCG- 2641 ---------- ---------U CA-CU-GC-- -CCGU----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AC-CU----- -ACC----UC CCG-GUUUU- 2821 CC----CUU- GGU-GCUC-- -UUGACU--- GAG-U--GU- C-UC------ GG-GUGG--C 2881 C--GG---AA --CGUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 G-ACU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACU--UGAG G-UAA-UGAU UAAUA-GGGA C-GGCC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U ACGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GU-A-AG-AC GGAC-AGCUG C-GAAA--CG G---UUUG-C C-AAG----- ---AGCGUUU 3541 U-C--AU-UA G-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- AGC------- 3661 ----GAU--- ----UCGCCG G----A---- -GU-UG---- ---------- --CUUCAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGA-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-UCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UUAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGA-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-Y-G AGA-C-UC-U AGCCU-AUUA A-AUA-G-UU ------CACC -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---AUCGAUC A-----GUC- 5521 -GGUG----C C----A-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A---ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AA-CG-UG-U GUCUG----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UG-GU 5881 CC--GACA-- GG-M------ --GGGUAACC --CG-G-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGGU- UGG---GG-C U-UGUAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GUGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGAU-AAU -CGGA----- --CUG-G--- --UCCG--G- --CGCGGGG- ---------- 6181 ---------- ---------- ---------- ----UUCG-- CCUC-GCGC- ---------- 6241 ---------- ------GGUG -UC--A---C C-GG---GAA G---ACGA-U CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UU....... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Schs.mansn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Schistosoma mansoni (African blood fluke). REFERENCE 1 AUTHORS Sogin,M.L., Hall,L., Agabian,N., Culpepper,J. and Newport,G TITLE Primary Structure of the Schistosoma mansoni small subunit rRNA coding region JOURNAL Unpublished (1992) COMMENT Corresponding GenBank entry: X53986|g10161 common_name= African blood fluke BASE COUNT 480 a 422 c 561 g 527 u 5882 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 GA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACCUUAAAA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-CUAU -GG-UUCCU- -UAGA-UC-- 241 GUAAACGCUA ---------- ---------- --------CA -U-GG-AUAA C-U-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCU UGAA------ ---------- ---------- 361 --U-CCCU-- -----GACCC ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----GGGGA- 541 ---CGG-GU- ---GCAU-UU -AUUA--GAA CAGA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- CGGGUGCGGC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCUGUGCCU 901 G--------- ---------- ---------- ---------- ---------- -----UUACA 961 UUC--UGUGA U---GACUCU --GG-AUAAC UUUACUGA-- -------UC- G----CAGU- 1021 -CG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GUCGG- -C-GA-CGGA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-UU--UG- -UUGGUA-GG -UGAU-UUG- CCU----ACC A-UGAU-GA- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAC -GGCA-GCA- GGC-GC--GA A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAC -GUAU----- -AC-GG---- 1861 -GACUC---- --AAUU---G AG-G-C---- -U-CCG-UAA -UUC------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CUUUA----- -------ACG A-GG-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- CUCCAGC-U- CCAAA-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUCU 2221 G-G--G-UC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GUG---- -CGGUCGCA- 2521 UGCCG--UUG CUUGUUCACG GUUUUGGUUA CGAUCAGGAC --CAGUGUUC AGCUCGGUGU 2581 AGUGGCUGUG CAGCCUUUCA GCC------- ---GUGUCU- GU----GUUA A-----ACGG 2641 GUGC------ ---------- -U-GG-UG-- -GGUUGACGA GUUC------ ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- UCU------- UGU------U GA-CC----- --------UG UCG-GCAUG- 2821 CUU--CCGG- -AU-GCCU-- -UUAAAC--- GGG-U--GU- -CGG-----G AG--CGG--A 2881 C--GG---CA --UCUUUACU UUG-AACAAA U-UUGAGU-G CUC-A-AA-G -C-AGGC--- 2941 C-UAUG---- ---------- ---------- ---------- ---UGCCU-- --GAAAAU-U 3001 C-UUGCA-UG G-AAUAAU-G AAAU-AGGA- C--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG A-UC--CGAA G-UAA-UGGU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- UG--UA-U-G GCGG-U-G-U U-A-GAG-GU GAAA-UUC-U GGGAUCGC-C 3481 GC-C-AG-AC AAAC-UACAG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UG A-UC-AG-GA G-CGAAA--G UCAGAG-UUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- GAC------- 3661 ----GAU--- ----CCGCGU U----G---- -GU-U----- ---------- --CUAUAAUU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----AU --C-GCGG-- ----GCA--- --------GU C-CCC----- 3901 ---------- GGGAAA-CC- UUU--AAG-U CUU-UGGG-C -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-U- UU-AA-UUCG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UGAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACU-UU-A A-CCU-GCUA A-AUA-G-UA G-----ACUG -----GU--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ------CCUC UGUGCUCGUU UAGGGCGCGG 5461 CUUCUAUUGC UUCUUUAUGG AGUAGUGUGG UCGUGAUCCG GCGGGUGCGG U------GC- 5521 -CAGU----U U-U--U-A-- ------CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 -------ACA CUUAA-GU-C G-C-ACG-AA -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCA -CACGUGCGC UA-CAAU-GA -CGGUG-C-C 5761 AG-CG-AG-U CUGGAAA--- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU G-------GC 5881 CC--GAAA-- GG-GU----- -UGGGCAAAC --UG-U-UUC -AU-CA-CC- GU-C-G-UG- 5941 ACU-GGGAU- CGG---GG-C U-UGCAAUU- A-UUCCCCG- UG-AA-C-GA GGA-AUUCC- 6001 U-GGUA-A-G U-GCA-AG-U CAUAAG--CU U-GCGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 UGAGGU-CGU -UGGA----- --UUG-G-CG UCGUUGUAG- ---UGGC--- ---------- 6181 ---------- ---------- ---------- -----UUU-- --GC-CG-C- ----U----- 6241 ---------- ------CGAC UGA--U-G-C U-GA---GAA G---AUGA-C CUAA-UUU-G 6301 A-C-UA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Fslp.buski 7872 bp RNA RNA 02-JUL-1998 DEFINITION Fasciolopsis buski (bile duct? fluke). REFERENCE 1 AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) COMMENT Corresponding GenBank entry: L06668|g290859 dev_stage= adult common_name= bile duct? fluke sex= hermaphrodite BASE COUNT 455 a 441 c 561 g 521 u 5894 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 GA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA AACCUUUAAA 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-CUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAUACUA ---------- ---------- --------CA -U-GG-AUAA C-U-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCA CUAU------ ---------- ---------- 361 --G-CCCU-- -----GACCC ---------- ---------- ---------- -----GCGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----GGGAA- 541 ---CGG-GU- ---GGAU-UU -AUUA--GAA CAGA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- CGGGGGCGGC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCGUUCCU 901 G--------- ---------- ---------- ---------- ---------- -----UUGCA 961 UUC--UGUGA U---GACUCU --GG-AUAAC UUCACUGA-- -------UC- G----CAGU- 1021 -CG----GC- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GUCGG- -C-GA-CGGA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-UUUUCG- -AUGGUA-GG -UGAC-CUG- CCU----ACC A-UGGU-GC- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACU- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AA-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAC -GGAU----- -AC-GG---- 1861 -GACUC---- --ACUA---G AG-G-C---- -U-CCG-UAA -UUC------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA UUUU-AAAUC CUUUA----- -------ACG A-GG-AUCAA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- CUCCAGC-U- CCAGA-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G-G--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GCAU--- -GGCU--AC- 2521 ACGCC--GUC GCUCGUUGGU CUGGCCUGGU UUCCACCGGG UUGAGCUUGC GAGUCGGUUU 2581 CGUGGUUGUG CUUCCUUUCU GCU------- ---GUGUCU- GU------UU ------ACAG 2641 GUGU------ -CAGCGUGAC CG-GU-GG-- -GCU------ ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- GCC------- UGC------U GG-UC----- --------UG UUG-GCAUG- 2821 CUU--CUUG- -GU-GCCU-- -UUAAAC--- GGG-U--GU- -CGG-----A GG--CGG--A 2881 C--AG---CA --CGUUUACU UUG-AACAAA U-UUGAGU-G CUC-A-AA-G -C-AGGC--- 2941 C-UUUG---- ---------- ---------- ---------- ---UGCCU-- --GAAAAU-U 3001 C-UUGCA-UG G-AAUAAU-G GAAU-AGGA- C--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG A-UC--CGAA G-UAA-UGGU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- UG--UA-U-G GCGG-U-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGC-C 3481 GC-C-AG-AC AAAC-UACAG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UG A-UC-UU-GA G-CGAAA--G UCAGAG-GUU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACU--- GAC------- 3661 ----GAU--- ----CCGUGG C--------- -GG-U----- ---------- --UCUUUAUG 3721 U--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GUC----CC --C-ACGG-- ----GCA--- --------GU C-CCC----- 3901 ---------- GGGAAA-CC- CUU--AAG-U CUU-UGGG-C -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUCG 4501 -ACUCAA-CA -CGG-----A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-UGAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- GGUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-U-G AGACU-UU-G G-CCU-GCUA A-AUA-G-UA U-----GCC- -----UG-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---CCUCUGU GCUCGUGCAG 5461 GUUUCGUUGU CCAUUGCCUC CUCGUGGGGU AGUGGUUACG UUGACCGGCG A-----AUGC 5521 --GGC--GCA G-G--U-A-- -AUUA-CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- CUUCA-GU-C G-C-ACG-AA -AAUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGUGCGC UA-CAAU-GA -CGGUU-U-C 5761 AG-CG-AG-U UUGGAAU--- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU G-------GC 5881 CU--GAGC-- AG-GU----- -CGGGUAAAC --UG-U-AUC -AU-AA-CC- GU-C-G-UG- 5941 ACU-GGGAU- CGG---GG-C U-UGCAAUU- G-UUCCCCG- UG-AA-C-GA GGA-AUUCC- 6001 U-GGUA-A-G U-GCA-AG-U CAUAAG--CU U-GCGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G G-UU-U-AG- 6121 CGAGGU-CCU -CGGA----- --UUG-G-UG CCAUUGUAG- ---UGGC--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --GC-CG-C- ----U----- 6241 ---------- ------CGAC CGG--U-G-C U-GA---GAA G---ACGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAG...... .......... 7861 .......... .. // LOCUS Ambl.macul 7872 bp RNA RNA 02-JUL-1998 DEFINITION Amblyomma maculatum (lone star tick). REFERENCE 1 AUTHORS Black,W.C.,IV, Klompen,J.S.H. and Keirans,J.E. TITLE Phylogenetic relationships among tick subfamilies based on the 18S nuclear rDNA gene JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: L76344 common_name= lone star tick BASE COUNT 446 a 408 c 483 g 448 u 6087 others ORIGIN 1 .......... .......... .......... ....G-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCACUGCA UGU-CUAAGU ---------- -------ACA UGCCGAA--- 121 AUA------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUUUCUUUCU A--------- ---------- --------CU -U-GG-ACAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCAU UGA------- ---------- ---------- 361 --G-CCUG-- -----AAGGC C--------- ---------- ---------- -----UUU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GGCUGA- 541 ---CGG-GC- ---GCUU-UU -AUUA--GAC CAAG------ --ACCCA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGU UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------UAC 961 UCU--G-UGG U---GACUCU --GG-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -UG----GC- ---------C AUGA------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUU -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AA-CUUUCG- -AUGGUA-GG -UUAC-UUG- CCU----ACC A-UGGU-UG- 1201 UUA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUU---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGAGU----- 1981 ------A-CA CUCU-AAAUC CUUUA----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-ACU-- AAAGCUGC-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-UUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGA--- -CGAG----- 2521 -UAGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------GCA- UC----UACC C-----GAUG 2641 C--------- ---------- GA-CG-G--- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------CU C-GU-----A CUG------- AA-CA----- ----UCAUGC CGG-UCCUC- 2821 UC-----UU- GGU-GCCC-- -UUCAUUG-- GUG-C--GU- C-UC------ GA-GGUG--G 2881 CC-UG---CG --CUUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AC-G -C-AGGC--- 2941 G-AGU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-A 3001 C-UUGCA-UG G-AAUAAU-A GAAC-AAGA- C--C-CUGU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UG--UUC--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG AAUA--CGGG G-UAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--UU-UG A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- G--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----GAU--- ----CCGCCU G----A---- -GU-UA---- ---------- --CUCAAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U AUU-UGGG-U -UCC-GGGG- -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- -U-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-GGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-AUUA A-AUA-G-GU G-CG--GGGU ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----UCCCAG C--------- 5521 -ACCU----U A-C--A---- ---AC-CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCCUA-GC-C G-C-ACG-AA -ACAGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-G-C 5761 AG-CG-UG-U CUUUAU---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CU--GAAA-- AG-AC----U --GGGUAACC --CG-U-GGA -AC-UU-CU- UU-C-G-UG- 5941 AUU-GGGAU- AGG---GG-C U-UGCAAUU- G-UUCCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-A-UG U-CCG--GC- --GCGGCC-- ---------- 6181 ---------- ---------- ---------- ----UUUC-- -GGU-UGCG- ----C----- 6241 ---------- -------CGG -UC--U-G-U U-GG---AAA G---AUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGA..... .......... 7861 .......... .. // LOCUS Ixod.ricin 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ixodes ricinus (tick). REFERENCE 1 AUTHORS Mangold,A.J., Bargues,M.D. and Mas-Coma,S. TITLE Phylogenetic relationships among tick genera (Acari: Ixodidae) based on 18S ribosomal RNA gene sequence data JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: Z74479 common_name= tick BASE COUNT 454 a 413 c 496 g 450 u 6059 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UGCCGAA--- 121 ACA------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUUUCUUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 CA-AUU-CUA GAGCUAA-U- --ACAUGCAG UGA------- ---------- ---------- 361 --G-CCCG-- -----AAGCC C--------- ---------- ---------- -----CUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GGGCGA- 541 ---CGG-GU- ---GCUU-UU -AUUA--GAC CAAG------ --AUCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------UUU 961 UGU--G-UGG U---GACUCU --GG-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -CG----GC- ---------C ACGA------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGUU -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GG -UUAU-GCG- CCU----ACC A-UGGU-UG- 1201 UUA-CGGG-U -AACGGAGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUU---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGAGU----- 1981 ------A-CA CUCU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-ACU-- AAAGUUGC-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-UUA ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGG--- -CGGG----- 2521 -AAGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------GCG- UG----GACA C-----CACG 2641 U--------- ---------- UA-CG-G--- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------CC C-GU-----G CUG------- AA-CA----- ----UCAUGC CUG-UCGUG- 2821 GC-----UU- GGU-UCCC-- -UUCAUC--- AGG-U--GC- C-UU------ GC-UUUG--A 2881 CC-GG---CG --CGUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AC-G -C-AGGC--- 2941 G-AUU----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-C 3001 A-GUGCA-UG G-AAUAAU-A GAAC-AAGA- U--C-CUGU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UG--UUC--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG AAUA--CAGG A-UAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----GAU--- ----CCGCCU G----A---- -GU-UA---- ---------- --CUCAAA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U AUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-GGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-AUUA A-AUA-G-GU G-CG--UGGU ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----UCUCUG C--------- 5521 -ACCU----U G-C--A-C-- ----C-CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCCUA-GC-C G-C-ACG-AA -ACAGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-G-C 5761 AG-CG-UG-U UUUUAU---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CU--GUAA-- AG-AC----U --GGGUAACC --CG-U-GGA -AC-CU-CC- UU-C-G-UG- 5941 AUU-GGGAU- AGG---GG-C U-UGCAAUU- G-UUCCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-A-UA C-CCG--GA- --GCGGCC-- ---------- 6181 ---------- ---------- ---------- ----UUUC-- -GGU-UGCG- ----C----- 6241 ---------- -------CGG -UG--U-G-U U-GG---AAA G---AUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCA....... 7861 .......... .. // LOCUS Apho.sp1 7872 bp RNA RNA 02-JUL-1998 DEFINITION Aphonopelma sp. (bird spider; tarantula). REFERENCE 1 AUTHORS Hendriks,L., Van Broeckhoven,C., Vandenberghe,A., Van de Peer,Y. and De Wachter,R. TITLE Primary and secondary structure of the 18S ribosomal RNA of the bird spider Eurypelma californica and evolutionary relationships among eukaryotic phyla JOURNAL Eur. J. Biochem. 177, 15-20 (1988) COMMENT Former RDP Sids: Eury.calif Corresponding GenBank entry: X13457|g9270 clone_lib= lambda Charon 4A dev_stage= adult common_name= bird spider; tarantula NB: former name Eurypelma californica BASE COUNT 456 a 420 c 489 g 449 u 6058 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UGCCUCCUUA 121 ---------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAU CAGA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----CUCUG 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---CGA-GC- ---GCUU-UU -AUUA--GAC CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------CGGA CUCGU----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -UCCG----- 901 ---------- ---------- ---------- ---------- ---------- -------UAU 961 CCC--A-UGG U---GACUCU --GU-AUAAC UUUGGGCUGA -------UC- G----CA--- 1021 -CG----GG- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----CCCGG- -C-GA-CGCA -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GG CUUAU-GCG- CCU----ACC A-UGGU-C-- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGC-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUUU---G AG-A-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUCU-AAAUC CUUUA----- -------AC- A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-UUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGACGG ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCG- CC----UAAC ------GGUG 2641 G--------- ---------U UA-CU-GC-- -CUGG----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------C CUG------- AA-CA----- ----GCCCAG CCG-G-UUU- 2821 CC----CUA- GAU-GAUC-- -UUCACC--- GGU-U--GU- C-CU------ GG-GUGA--C 2881 C--GG---CA --CGUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 G-UGU----- ---------- ---------- ---------- ---AGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AGGA- C--U-UCGU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAUA--CGAG G-UAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----GAU--- ----CCGCCU G----A---- -GU-U----- ---------- --CCUCAAAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUUA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-GAAGG AUU-G-ACA- 4621 GA--UUAAGA GC--UCUUU- CUUGAUU-C- AGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- AUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUUAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-ACUA A-AUA-G-GC G-U---CCC- -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----CACUUC U-----GUC- 5521 --GGG----- --C--G-U-- ----U-CU-U C-UU-AGAGG -GA---CAA- A-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C G-C-ACG-AG -ACAGAG-C- AAUAACAGG- UCUG-AG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U GCUUU----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CC--GGUA-- GG-AC----U --GGGUAACC --CG-U-UCA -AC-CU-CC- UU-C-G-UG- 5941 AUA-GGGAU- AGG---GG-C U-UGUAAUU- G-UUCCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-ACG-AG-U CAUAAG--CU C-GUGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --UUG-G-CG --CUCGGA-- --GCGGCC-- ---------- 6181 ---------- ---------- ---------- ----GCAA-- -GGU-CGC-- ----G----- 6241 ---------- -----CC-GG -CG--U-G-C C-GG---AAA GCG-AUUGAC CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Andc.austr 7872 bp RNA RNA 02-JUL-1998 DEFINITION Androctonus australis (Sahara scorpion). REFERENCE 1 AUTHORS Chalwatzis,N., Kinzelbach,R. and Zimmermann,F.K. TITLE Complete sequence of a Scorpion 18S rRNA gene JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: X77908|g457449 dev_stage= adult clone= pNC07And18S common_name= Sahara scorpion BASE COUNT 470 a 410 c 491 g 441 u 6060 others ORIGIN 1 .........U ACCUGGU-GG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA UACCGAA--- 121 AUA------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAC -GG-UUCCU- -UAGA-CU-- 241 GUACUUUCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAU CAGA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---CGA-GC- ---GCAU-UU -AUUA--GAC CAAG------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGAC UUAG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------CAA 961 ACU--G-UGG U---GACUCU --GG-AUAAC UUUGAGCUGA -------UC- G----CA--- 1021 -CG----GU- ---------C UAGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGUA -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AA-CUUUCG- -AUGGUA-GG -UUAU-GCG- CCU----ACC A-UGGU-CG- 1201 UUA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UAUU---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGGGU----- 1981 ------A-CA AUCU-AAACC CUUUA----- -------ACG A-GU-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GUGGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-A--G-AUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGAGCU ---------- 2521 GCGGU----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CCA- CC----GCCC ------GGUG 2641 G--------- ---------U UA-CU-GU-- -AGCG----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------A CCG------- GA-CG----- -----UUUGG CCG-G-AUU- 2821 CC----UUU- GAU-GCUC-- -UUUGCC--- GAG-U--GU- C-UU------ GG-GUGU--C 2881 C--GG---CA --CGUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 G-UAC----- ---------- ---------- ---------- ---CGCCU-- --GAAUAA-U 3001 G-GUGCA-UG G-AAUAAU-G GAAU-AAGA- C--C-UCGU- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAAA--CGAG G-AAA-UGAU UAAGA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----AAU--- ----CCGCCU G----A---- -GU-U----- ---------- --CCUCAAAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-AGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CU-G-GAAGG AUU-G-ACA- 4621 GA--UUAAGA GC--UCUUU- CUUGAUU-C- AGUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-ACUA A-AUA-G-AC G-----AAC- -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----CACUGG A-----GUC- 5521 --GUU----- --C--G-A-- ----U-CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUUUA-GC-C G-C-ACG-AG -ACAGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-C GUUUAC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CC--GGCA-- GG-AC----U --GGGUAACC --CG-A-UCA -AC-CU-CC- UU-C-G-UG- 5941 AUA-GGGAU- AGG---GG-C U-UGUAAUU- C-UUGCCCU- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-ACG-AG-U CAUAAG--CU C-GUGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CUG-G-CG --CUCGGA-- --GCGGCC-- ---------- 6181 ---------- ---------- ---------- ---UUACU-- -GGU-CGC-- ----G----- 6241 ---------- -----CC-GG -CG--U-G-C C-GG---AAA G---AUGA-C CGAA-CUU-G 6301 A-U-UA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GGA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Spen.cingu 7872 bp RNA RNA 02-JUL-1998 DEFINITION Scolopendra cingulata (centipede). REFERENCE 1 AUTHORS Giribet,G., Carranza,S., Baguna,J., Riutort,M. and Ribera,C. TITLE First molecular evidence for the existence of a Tardigrada + Arthropoda clade JOURNAL Mol. Biol. Evol. 13 (1), 76-84 (1996) COMMENT Corresponding GenBank entry: U29493 common_name= centipede BASE COUNT 447 a 459 c 528 g 437 u 6001 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------GCA UACCGCAUUA 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACCACCCU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAG AAAA------ ---------- ---------- 361 --G-CUCC-- -----GACC- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---CGA-GC- ---GCUU-UU -AUUA--GAA CAAG------ --ACCAA-UA ---------- 601 ---------- ---------- ---------- ---------- ---CGGAUCG GCAG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CGGUCCG-- 901 ---------- ---------- ---------- ---------- ---------- ------UUCC 961 CGU--U-UGG U---GACUCU --GG-AUAAC UUGGAGCCGR -------UC- G----CA--- 1021 -CG----GU- ---------C CUCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGC- -C-GA-CCCA -UCU-UUC-A AAUGU-CUGC 1141 --CUU-AUS- AA-CUGUCG- -AURGUA-GG -UUAU-GCR- CSU----ACC A-UGGU-CG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GACUC---- --UUCC---G AG-G-C---- -C-CCG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AA-GUUGU-U --GC-GUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-UGC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGU--- -CCGC----- 2521 -GGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- GC----CUCG C-----GCG- 2641 ---------- -------UCU CA-CU-GC-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------C G-G-----CC CCGG------ AG-CC----- ----AUCCUG CCG-GCCGU- 2821 CC----CUC- GGU-GCUC-- -UUUAUU--- GAG-U--GU- C-UU------ GG-GUGA--C 2881 C--GG---AA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUC-C-AA-G -C-AGGC--- 2941 G-UGC----- ---------- ---------- ---------- ---UCCGCCC --GCAUAG-C 3001 C-CAGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--K KUKGKUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACC--GGAG G-UAA-UGAU UAAUA-GGGA C-AGAC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-C Y-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---AAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAACC--- AGC------- 3661 ----GAU--- ----CCGCCG G----A---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-ACUA A-AUA-G-AC G-----UCC- -----GA-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- --------CC UGGGGUGCCG GUGCCUCCUA 5461 AACCUCCGCU CUUUCGAAAA GAGUGGGAGG CGGGGGAACG GCUUUGCCUC U-----GUC- 5521 --GGA----- --CGAU-U-- ----G-CU-U C-UU-AGAGG -GA---CAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUCA-GC-C G-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-GGGG-SYG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U GUYCUC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------UAGU 5881 CC--GGAA-- GG-AC----C --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 AUA-GGGAU- CGG---GG-C U-UGGAAUU- G-UUCCCCG- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CUG-G-CG -GUCG--CU- --GCGGCC-- ---------- 6181 ---------- ---------- ---------- ----CUCG-- -GGU-CGC-- ----G----- 6241 ---------- -----GU-GG -CG--U-G-C C-GG---GAA G---AUGA-C CGAA-CUU-G 6301 A-C-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Call.sapds 7872 bp RNA RNA 02-JUL-1998 DEFINITION Callinectes sapidus (blue crab). REFERENCE 1 AUTHORS Kim,W. and Abele,L.G. TITLE Molecular phylogeny of selected decapod crustaceans based on 18S rRNA nucleotide sequences JOURNAL J. Crust. Biol. 10, 1-13 (1990) COMMENT Corresponding GenBank entry: M34360|g174114 common_name= blue crab BASE COUNT 359 a 375 c 421 g 367 u 6350 others ORIGIN 1 .........N NCCUGGU-NG A--U-CC-UG CC-AG-NA-G U-CNUNNGCU -UGU-CUC-A 61 AA-NNUUAA- -GCCNNGC-A UGU-CUNAGU ---------- -------ACA AGCCGAAUNA 121 ---------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -N-NNUA-AA -UCAG-CUAU -GA-UUCAU- -UNNA-UC-- 241 UGUACCCNCN CNNA------ ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA NAGCUAA-U- --ACAUGCAU UACG------ ---------- ---------- 361 --U-CUCU-- -----GACC- ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GN- ---GCUU-UU -AUUA--GUU CAAA------ --ACCGG-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCCG---- 901 ---------- ---------- ---------- ---------- ---------- ------CCCC 961 ACU--G-UGU U---GAAUCU --GA-AUAAC UUUUUGCUGA -------GC- G----CA--- 1021 -CG----GU- ---------C UCN------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCNCG- -C-GC-NGCC -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AG-CUUUCG- -AUUGUA-GG -UUAU-ACG- CCU----ACN A-UGGC-UN- 1201 UNA-CGGG-U -NACGGGGAA U-GAGGGUUC -GAUU-CCGG A-GAGNG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACN- 1741 UC-UNAGGNN -GGCA-GCA- GGC-AC--GC N-NAUU-ACC C-AC-U-CCG ----GCN--- 1801 -C-GGGGA-G GUA-GUGAC- NAA------- ----AAAUAA -CGAU----- -GC-GA---- 1861 -GACUC---- --AUCC---G NG-G-C---- -C-UCG-NNA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------N-CA CUUU-AAAUC CUUUN----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CNA-G-U-C -UGGU-G-CC N-GC-A-GCC -NCGG-UNA- UUCCAGC-U- GCAAU-AN-N 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----ANAAAG CUCGUAGUUN ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----NAUUU 2221 C-A--G-UUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGACUG ---------- 2521 ACGGUU---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------N-- CC----GCNN ------GGUG 2641 ---------- --------CA CA-CU-GU-- -CACNC---- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------U CCG------- AA-CA----- -GCCACAACA CCG-CUGGC- 2821 CN---NNGG- GGU-GCUC-- -UUCNCC--- NGG-U--GU- C-C....... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....CCU-- --GAAUGC-C 3001 U-AUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -N-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------NC UN--UUU--U GUCGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CUG AACC--CGAG G-UAA-UGAC UAAUA-GGAA C-NGGC---- ---------G 3421 GGGGCN-UU- CG--UA-U-U GCGA-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-N-AG-AC GAAC-UNCUG C-GAAA--GC A---UUUG-C C-NAG----- ---GAUGUUU 3541 --C--NU-UN A-UC-NA-GA A-NGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC.. .......... A--AC-CN-U -AAACGAU-G -CUGACC--- AGC------- 3661 ----GAU--- ----CCGCCG G----N---- -NU-UAU--- ---------- --UNNC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-GCCN-- ----CCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UC-AAA---- --GGAA-UUG -ACGG..... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 ......A-CA -CGG-G---G AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CC-G-GAAGG ANN-G-ACA- 4621 GA--UUGAGA GC--UCNNU- CUC-AUU-N- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -NGUG-CAUN 5101 NCG-GU-UC- UUA--GUUGG -U-GGA-GCG .......... .......... ....CGAU-N 5161 AC-GAA-C-G AGA....... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .........G U----GUCCA 5521 --GUU----C G-C--A-G-- --CUU-CU-U C-UU-AGAGG -GA---UAA- --CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 --------AA UUCUA-GC-C G-C-ACG-AG -AUUGAG-C- AAUAACAAG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG--CG -CACGCGCGC UA-CACU-GA -AGGGA-U-C 5761 AA-CG-UG-U CCU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------N-CU 5881 CC--GAGA-- GG-AG----C --GGGNNNCC --CG-U-UGA -AA-UC-CN- UU-C-A-UG- 5941 AUA-GGGAU- UGG---GG-U U-UGCAAUU- G-UCUCCCA- UG-AA-N-NN GGA-AUUCC- 6001 C-AGUA-A-G C-GCA-AG-U CAUGAG--CU U-GCGN-U-G -AUUNNGU-C CC-UNCCNNU 6061 UGUA-CACAC C--NN-NNNU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGG--CUU -CGGA----- --CUG-G-CG CUCUUGGAU- --GCCGG--- ---------- 6181 ---------- ----NCCCGA GNGGUUCNNC GCCGGNNC-- --NC-GGC-- --GCC----- 6241 ---------- -----UCGAG --C--U-G-A C-GG---AAA G---AUGU-C CAAA-CUU-G 6301 A-U....... .......... ......AAG- UCGUAA--C- AAGG-U.... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Pnul.argus 7872 bp RNA RNA 02-JUL-1998 DEFINITION Panulirus argus (Caribbean spiny lobster). REFERENCE 1 AUTHORS Trapido-Rosenthal,H.G., Coates,K.A., Kinloch,A., McDowell,L. and Halanych,K.M. TITLE Molecular Phylogeny of marine annelids and arthropods from Bermuda JOURNAL Unpublished (1995) COMMENT Corresponding GenBank entry: U19182|g624226 common_name= Caribbean spiny lobster BASE COUNT 463 a 444 c 505 g 460 u 6000 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------ACA GGCCGACUUA 121 ---------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-CUAU -GA-UUCAU- -UGGA-UC-- 241 UGUAAACCCA CUUA------ ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAC CACG------ ---------- ---------- 361 --U-CUCU-- -----GACC- ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---AGA-GC- ---GCUU-UU -AUUA--GUU CAAA------ --AUCAG-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCCG---- 901 ---------- ---------- ---------- ---------- ---------- ---UUACCCA 961 UGU--G-UGG U---GAAUCU --GA-AUAAC UUCUCGCUGA -------GC- G----CA--- 1021 -GG----GU- ---------C UCCGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GC-CGCA -UCU-UUC-A AGUGU-CUGC 1141 --CUU-AUC- AG-CUUUCG- -AUUGUA-GG -UUAU-GCG- CCU----ACA A-UGGC-UA- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -GC-GA---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-UCG-CAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-U 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-A--G-UUC ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGAGUG ---------- 2521 ACGGUU---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CA- CC----CCCC ------GGUG 2641 ---------- --------CC UA-CU-CU-- -CACGC---- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------U CCG------- AA-CA----- GCCGCACCCC GCC-CGGUU- 2821 GC---ACGG- GGU-G-UC-- -UUCAUC--- GAG-U--GU- C-CC------ GA-GUGG--C 2881 C--GGC--A- --CGUUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-GA-G -C-AGGC--- 2941 U-GUUUGAAU ---------- ---------- ---------- ---GGCUU-- --GAAUGU-C 3001 U-AUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AACC--CGAG G-UAA-UGAC UAAUA-GGAA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-C U-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GC-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CUGACU--- AGC------- 3661 ----GAU--- ----CCGCCG G----C---- -GU-UAU--- ---------- --UCCC---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------AU -GAC----CC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGAG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GC-G-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAUCUCA-CC -CGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUCGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CUGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-AUUA A-CUA-G-UC G------AC- -----GG-AU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --CUCCAGCA UGCUCCGUGG U----GUCCA 5521 --GU----AC G-C--A-A-- --CUU-CU-U C-UU-AGAGG -GA---UAA- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 --------AA UUCUA-GC-C G-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGGA-C-C 5761 AA-CG-UG-U UGU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------C-CU 5881 CC--GAGA-- GG-AG----C --GGGUAACC --CG-U-UCA -AA-CC-CC- UU-C-A-UG- 5941 AUA-GGGAU- UGG---GG-C U-UGCAAUU- G-UUUCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCA-AG-U CAUUAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGC--UU -CGGA----- --CCG-G-CG CUCUUGGAU- --GUUGU--- ---------- 6181 --------AC CCCUCCCCCG CAAGGGUGCU UGGAGGUG-- --UU-CUC-- --GCC----- 6241 ---------- -----UGGAG --C--U-G-A C-GG---AAA G---AUGU-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-AUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Balu.eburn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Balanus eburneus (cirriped crustacean). REFERENCE 1 AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) COMMENT Corresponding GenBank entry: L26510|g603439 common_name= cirriped crustacean BASE COUNT 437 a 431 c 527 g 441 u 6036 others ORIGIN 1 .......... ...NNNN-NN A--N-CC-NG CC-AG-NN-G U-GAUAGGCU -UGU-CUU-A 61 AA-GAUUAA- -GCCAUGC-A NGU-AUCAGU ---------- -------ACA AGCCUCACUN 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -UA-UUUAC- -UGGC-CG-- 241 AGACAGUGAU A--------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AU--CUA GAGCUAA-U- --ACAUGCAA CCGA------ ---------- ---------- 361 --G-CCCC-- ---AGUGCCG GC-------- ---------- ---------- -----UCUCG 421 G--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- --GUCGGCC- 541 ---GGG-GC- ---GCUU-UU -AUUG--GCU NAAA------ --ACCGA-U- ---------- 601 ---------- ---------- ---------- ---------- ---GAUCGUC CUCGU----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCGAUC-- 901 ---------- ---------- ---------- ---------- ---------- ---------G 961 UUC--UCCGA U---GAAUCA --CA-AUAAC AUUGUGUGGA -------UC- G----UA--- 1021 -CG----GU- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGA- -C-GA-CGCG -CCU-UUC-A AAUAU-CUGC 1141 --CUU-AUC- AG-CUCUCG- -ACGGUU-UN -CUAG-UGG- CUG----ACC G-UGGC-UC- 1201 UGA-CGGG-U -AACGGGGAA U-CUGGGUUC -GGUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-ACUU-ACC C-AC-UCCCA ----GUU--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAC -CUUAC---- -AG-AG---- 1861 -GUCUCG--- -UUAAC--CG AG-A-U---- -C--UC-UNA AACG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA ACGU-GAAUC CUUUA----- -------ACG A-GG-AUCGA CUGGAG-GG- 2041 -CAA-G-C-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGCUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUAU 2221 C-A--G-UG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGUGU-- -CCGG---U- 2521 CCGGUA-UNC CUGGC----- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ----GGCGGC GC----UCGC ------GGUC 2641 ACU------- ---------- -G-CUGGG-- -CUCCCAAAU ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------AUC G-G--CUGGC -CG------- CA-UU----- --CAAUCGUG CCGGAUNNNN 2821 NNG----CC- GGGCCGUUC- -UUCGGA--- GGG-G--CC- U-GG------ UG-GCGA--C 2881 C--GG---CG --ACGUUACC UUG-AACAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 U-CUGUA--- ---------- ---------- ---------- ---UGCCU-- --GUAUAC-A 3001 U-AUUCA-UG G-AAUUGG-A GAAU-ACGU- C--C-CUGG- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC GA--UUU--G GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------GAGA GUCG--AAGG G-AAA-UGAU UAAUA-GGGA C-UGAC---- ---------G 3421 GAGGCA-UU- CG--UA-U-U GCGA-C-G-C G-A-GGG-GU GAAA-UCC-U GUGACCGU-C 3481 GC-A-CG-NC GAAC-UACUG C-GAAA--GC A---UUUG-C C-GAG----- ---AAUGUUU 3541 U-C--AU-UA G-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CG-U -AAACGAU-G -UCGACC--- AGC------- 3661 ----AAU--- ----CCGCAA C----G---- -NU-C----- ---------- --ACUACACG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UG --U-GCGG-- ----NCA--- --------GC U-UCCCC--- 3901 ---------G GGGAAA-CC- A----GAG-U UUU-UGGA-C -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A CAACUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-UAAGG AUU-G-ACA- 4621 GA--CUGAUA GC--UCUCU- CUUGAUU-C- AGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUUAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U GGCCU-AUUA A-AUUUGACA C-----UGU- ---C-AG-UC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----UUUAC U----GACU- 5521 --GCG----- --G--U-G-- ---GG-CU-U C-UU-AGAGG -GA---UCA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------G UCCCA-GC-C G-A-AGG-AA -AUGGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGUGU UA-CACU-GA -AGUGG-U-C 5761 AG-CG-CG-C CGUUCAACAC ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-CU 5881 CC--GUGA-- GG-AG----C -UGGG-CAAA --CGUU-UGA -AC-CC-UU- UU-C-G-UG- 5941 AUG-GGAAU- UGG---GG-G U-UGCAAUU- G-UCCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 A-AGUA-A-G C-GCA-GG-U CACUAG--CC U-GCGU-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- U---GGAU-G A-UU-U-GG- 6121 UGAGGU-CGC -CUAGA---- --CUG-G-CU GC-------- ---UGGC--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --GC-CGU-- ---------- 6241 ---------- ---------- -GC--G-G-- C--G---GAA G---ACGC-C CAAA-CUU-G 6301 G-U-CG-UNN AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Acrt.pisum 7872 bp RNA RNA 02-JUL-1998 DEFINITION Acyrthosiphon pisum (pea aphid). REFERENCE 1 AUTHORS Kwon,O.-Y., Ogino,K. and Ishikawa,H. TITLE The longest 18S ribosomal RNA ever known. Nucleotide sequence and presumed secondary structure of the 18S rRNA of the pea aphid, Acyrthosiphon pisum JOURNAL Eur. J. Biochem. 202, 827-833 (1991) COMMENT Corresponding GenBank entry: X62623|g11034 dev_stage= adult common_name= pea aphid BASE COUNT 489 a 698 c 769 g 513 u 5403 others ORIGIN 1 .........U CCCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------GCA AGCCGCAUUA 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-ACCG-U -C-AUUA-AA -UCAG-UUGU -GG-UUCCU- -UAGA-UC-- 241 GUACCCAAGU UA-------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACAGA----- ---------- ---------- 361 --G-UUCC-- -----GACCG U--------- ---------- ---------- -----CGCGG 421 CGCCCUCGGG C-UCGCUC-- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GCGGGA- 541 ---GGA-AC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCGG-CC C--------- 601 ---------- ---------- ---------- --------GU CGCGGCGCGC UUCGU----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCGCGUCCC 901 GAU------- ---------- ---------- ---------- -----CGCGG CCCGCGCAAA 961 GAC--C-UGG U---GA-UCU --GA-AUAAC UUCGAGCUGA -------UC- G----CA--- 1021 -CG----GU- ---------C UCCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GG -UUCC-AUG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGCC -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-U-CCG ----GAA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-GCC---- -C--CG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA CUUU-AAAAC CUUUAA---- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-CG-C 2101 GUAU-AUU-- AAAGUUAU-U --GCGGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G--------- ----UGUCUG GACGGUGCCG GACCACCCUG GCGGUCCGUC GUGUCGCGGC 2281 CGGCCGUGUC GCGGGACCAC GGUGUCCCGU CGGCGCGGUC GCCGUCGCGC UCGUCAGCCG 2341 UCUCGGGGUG UUAGUUACCG GCACGUCGGC CGGACGUAUU GUCGGCAGGC GGACACGUGU 2401 CGUGCUUCCG GCCCGCCGUC GCGGCCACGC GUCGCGCGGC CGUCGGUGUU CGACGACGGC 2461 GGCCGACCUA ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -------CUC CAA-UCUUG- 2821 CU---GCGC- GGU-GCUC-- -UUCACC--- GAG-U--GC- C-GUC----- GG-CGGG--C 2881 C--GA---CA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 U-CGAAUCUG GCGGGGCGGC UUCACGGCCG UCUCGUCAAA AG-GCCCU-- --GAAUAC-U 3001 GGUCGCA-UG G-AAUAAU-G GAAC-AAGA- C--C-UCGG- -UCCCGCGCA UCUCCGCCCU 3061 UCGCGGGACG CGCGAAAUCG CC-UCCGGGG CGUUUCCGUG CGCGGGCCGC CGGGCCGCGG 3121 GCGCCAGUCG CCCGCGCGUC CCG-CCG--G GCCGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC--GGAG G-UAA-UGAU CAACA-GAGA C-GGGC---- ---------G 3421 GGGGCA-UU- CG--UA-C-C GAGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 UC-G-AG-AC GAAC-UGACG C-GAAA--GC A---UUUG-C C-AAG----- ---UACGUUC 3541 U-C--GUAUG A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-UG-U -AAACGAU-G -CCAGCU--- AGC------- 3661 ----GAU--- ----CCGCCG G----C---- -GU-U----- ---------- --UCAUUAAC 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- G----AAG-C UUU-UCGG-U -UCC-GGGGG -AAG-UAUGA 3961 U-U-GCAA-A GU-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCG-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAAG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UCUGU-CU --GG-UU... .........A 5161 AC-GAA-C-G AGA-C-UC-U GUCCU-GCUA A-CUA-G-GC G-----GU-- ---------- 5221 ---AAACCCG GGUCGGCGUG UGCGCGGCGC UGGCGGUUUC GGCCGUCAGU GUUCGCGUAC 5281 CCGUCGGCUC GGCCCGGUAU CCCCGAACGC GUUCGCCCGU CGUCCACGGC GGUCGUCGGG 5341 CGCGGCCGCG CCAUCCGCGU CCCGGCGUUC GGCGGGCGUA UGUCGGCCGG GGGGCAACCU 5401 CCGGUCGGCC UGCGUCCGUC GUGCGUCGGG CUCCGUGGUG AAGCGCGCCG UGUUCGCGGC 5461 CGUCGCCGGC GGAUCACGAU ACGUUACUAG GGCUACCGCC GGCUCCCAGG A--------- 5521 ---GC----- -UU--A-A-- --ACU-CU-U C-UU-AGAGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ----GGACGA ACAUA-GC-C G-C-ACG-AG -ACUGAG-C- GAUAACAGG- UCUGGUG-AU 5701 GCCCGUU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-AG-U UUAACAA--- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UG-GG 5881 CC--GACA-- GG-CU--UCC --GGG-UAAC --CCGC-UGA -AC-CG-CU- -U-C-G-AGC 5941 UUA-GGGAU- CGU---GG-C U-UGCAAUU- U-UUCCACG- UG-AA-C--- GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAC-G G-UC-GCAU- 6121 UGAGGU-CUU -CGGA----- --GUG-G-AC --GCGCGUU- ---AUUCG-- ---------- 6181 ---------- ---------- -------GCC CCCUCGCG-- -UGG-GU-C- ---GU----- 6241 ---------- -----CGCGC -----G-A-U C-GC----AA G---AUGA-C CGAA-AUC-G 6301 G-C-CG-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUC--GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Peal.kelog 7872 bp RNA RNA 02-JUL-1998 DEFINITION Pealius kelloggii (Kellogg's whitefly). REFERENCE 1 AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny: eco-evolutionary and cladistic implications within pre-Heteropterodea Hemiptera (s.l.) and a proposal for new monophyletic suborders JOURNAL Pan-Pacific Entomol. 71, 31-60 (1995) REFERENCE 2 AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-88 (1994) COMMENT Corresponding GenBank entry: U06479|g532982 common_name= Kellogg's whitefly BASE COUNT 490 a 727 c 783 g 496 u 5376 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -CGU-CUC-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------GCA AGCCGAACUA 121 ---------- ----AGGUGG A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-AGGC-U -C-AUUA-AA -UCAG-UUGU -CG-UUCAC- -AGGA-UC-- 241 GUGCCAAACC UUA------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCG ACAGA----- ---------- ---------- 361 --G-UCCCGU CAACUCCCCG GG-------- ---------- ---------- -----CUUG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- --CCCGGCA- 541 ---GGG-AC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCGA-C- ---------- 601 ---------- ---------- ---------- ---------- ACCGCGGGCU UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGUCCGCGG 901 U--------- ---------- ---------- ---------C UCAUUAGCAC CUCGUGUGCA 961 CAC--U-GGA C---GAUUCC --GA-AUAAC UCCGGCCGA- -------UC- G----CA--- 1021 -UC----GAC UC-------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- -GGGUCGGG- -C-GA-CGCA -UCC-UUC-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -ACGGUC-GG -AUAG-AGG- CCU----ACC G-UGGU-UG- 1201 CGA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C--GGGA-G GUA-GUGAC- GGA------- ----AAAUAC -CGAU----- -GC-GG---- 1861 -GACUC---- --AACC---G AG-G-C---- -C-CCG-UGA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGC----- 1981 ------G-CC CCGU-AAACA AGGCG----- -------ACG A-GG-ACCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAC-AG-C 2101 GUAU-ACU-- AAUGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUCA ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAAUU 2221 G--------- ----UGUUCC GCGCCGACGG UUCGACGGCC UUC----GUG CCGUUGCACA 2281 CCGACGCGUU ACGAACAUCC GGCCGGUGGC GGUACGGCGC CGUCCGCGGG CUCGCCCGUC 2341 CUUCUGGACU CGGGGUUGCG GUUCCGGCCC CUCGCCGUCA GUGUCGUUCG CCCAUAUCCC 2401 AUUGCACUCG UGCAUUGAUC AAGCGCGGCC UUUCGGGGUC CCUCCGGACC GGGCUCGGGC 2461 CCCCGCGGCA UUCCCGGCGG AGUCCCCCGU GGACCCC--- ---------- ---------- 2521 -------GCC CGGGAGAGCG GACCCGAUAG GCAUUUCCGG CGGCGCGGUG AGGAUCCUCC 2581 UCGCCCGGCC GUCCGGGAGA CCGUCCGC-- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CA AUU-U-UCC- 2821 CG---CCGC- GGU-GCUC-- -UUCAUC--- GGG-U--GU- C-GC------ UG-CGGG--C 2881 C--GG---CA --CACUUACC UUG-AACAAA U-UAGAGU-G CUC-A-UC-G -C-GAGG--- 2941 A-CGUUCGAA AAAACGUCCG AAAGGCGU-- ---------- ---GGCCC-- --GCAUAC-A 3001 G-GUGCA-UG G-GAUAAC-A GAAU-ACGA- C--C-UCGG- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC CG--GGG--U UUCGUCGGUU CACCGGGCCC GUCGCUGACC 3181 CGGAAGCGUA GGAUACCGCU AUUGCGGGCA CCUUCGUCCG ACGGCGCGG- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- -------CGG 3361 GUCUUUGCGG GGUC--CGAG G-UAA-UGAU CGAUA-GGGG C-GGAC---- ---------G 3421 GGGGCA-UC- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GAAC-AGCUG C-GAAG--GC G---CUUG-U C-AAG----- ---CAGGUUC 3541 C-C--GU-UG A-UC-AA-GA A-CGAAA--G UCAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CG-U -AAACUAU-G -CCAGCU--- AGC------- 3661 ----GAU--- ----CCGCCG A----C---- -GA-U----- ---------- --CCCUCCGU 3721 UAU------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----UC --G-GCGG-- ----GCC--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UAA-CGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A AC-UGGA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GU--UCUUU- CUCGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGUCUU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-CC-- GUCCU-GCUA G-UUA-G-GC G-A---UCC- GGGC-GC-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ------UCCC GCUCCCGGGC GGUCGCUCGC UCGCGGGUGG CCGUUUUGGA CGGGGGGCUU 5341 UAAGCCCGGG ACCCGGUAUC GUGAUCCGUA CUCCGUCCGC CCGCCUCGUG CGGGCGAGAC 5401 CCCGUCGAGG CGGCCGGCUC CGCGGUUUAC GCCGUGCGAG UCGGUCGUUC ACCGGCGGGA 5461 GCAGUGAGUC GGAGGGCCCG GUCCUUUCGG GGGCCGGACA CGCUCGCUAC C-----GGC- 5521 --GGG---AC UUU--A-U-- --UCAGCU-U C-UU-AGAGG -GA---CAA- A-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 --------GA AGUCA-GC-C G-U-GCG-AU -ACGGAG-C- GAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CGG -CACGCGUGC UA-CAAU-GG -ACGGA-U-C 5761 AG-CG-UG-U UCUA------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UA-CG 5881 UC--GAGA-- GA-CA---UC ---GG-UAAC --CCCC-UGA -AU-CC-CG- UC-C-G-UG- 5941 GAA-GGGAC- CGG---GG-C U-UGCAAUU- G-UUCCCCG- CG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-G-U C-GCG-AG-U CAUAAC--CU C-GCGG-C-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UC--GAGC-G G-UU-C-GG- 6121 CGAGGA-CCU -CCUA----- --CGG-C-UC GCCGGCGA-- --CCGCUC-- ---------- 6181 ---------- ------CGUG CGGGGCCGCC GGUGCAGC-- -GUG-CGG-- ---------- 6241 ---------- ------UUUU GUG--C-C-G C-GG---AAA G---UCGA-C CGAG-CCC-G 6301 A-U-CG-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA .......... 7861 .......... .. // LOCUS Gllr.melln 7872 bp RNA RNA 02-JUL-1998 DEFINITION Galleria mellonella (greater wax moth). REFERENCE 1 AUTHORS Chalwatzis,N. and Zimmermann,F.K. TITLE JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: X89491|g1150401 common_name= greater wax moth BASE COUNT 480 a 425 c 515 g 485 u 5967 others ORIGIN 1 .........U ACCUGGU-GG A--U-CC-UG CC-AG-UA-G U-UAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------GCA AGCCGUAUUA 121 ---------- ----AGGCGA U--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AAUA-UA -UCAG-UUUU -GG-UUCCU- -UAGA-UC-- 241 UUACUCAGUU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA UCAGA----- ---------- ---------- 361 --A-CUCU-- -----GACCA ---------- ---------- ---------- -----GUGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGGA- 541 ---UGA-GU- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-UC GACGGA---- 601 ---------- ---------- ---------- ---------- ------GGGC CUCGC----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUCC----- 901 ---------- ---------- ---------- ---------- ---------- GAUGUCGUUA 961 AUU--U-UGA U---GAAUCU --GG-AUAAC UUUUGCCGA- -------UC- G----CA--- 1021 -UG----GU- ---------C CAGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUUUCG- -AUGGUA-GU -UUCU-GCG- ACU----ACC A-UGGU-UG- 1201 UCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --UUAC---G AG-GCC---- -U--CG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUA UUUUA----- -------ACG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-ACU-- AAAAUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----CAUUU 2221 G--------- ----UGCGCC GCGCUGUCGG UGCACCGCAU CCGCG--GUG AUACUGACAC 2281 GUUUGCGGAG CAUAUCGUCG GUGAGCCGGC GGUAAAACGC CGGUUCAA-- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------UA UCA-AAAUC- 2821 CU--AUCGC- GGU-GCUC-- -UUCGGU--- GAG-U--GU- C-GA------ GG-UGGG--C 2881 C--GA---CA --AUUUUACU UUG-AACAAA U-UAGAGU-G CUC-A-AA-G -C-GGGC--- 2941 U-CAAAAUGC ---------- ---------- ---------- ---UGCUU-- --GAAUAU-U 3001 UCGUGCA-UG G-AAUAAU-A GAAU-AUGA- U--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CAG AACU-CCGAG G-UAA-UGAU UAAUA-GGGA U-AACU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GAAC-AUCAG C-GAAA--GC A---UUUG-C C-AAA----- ---GGUGUUU 3541 U-C--AU-CA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUUA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CG-U -AAAU-AU-G -UCAUCU--- AGC------- 3661 ----GAU--- ----CCGCCG A----C---- -GU-U----- ---------- --ACUACAAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-A UUU-UGGA-C -UCC-GGGGG -GAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAUCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUAACA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGGU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-GC G-UC--GC-- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ------CAUU UAGGUGUGCG CGGCCUUCGU GUCGCGCAAC UCACUGGCGA C--------- 5521 ---GU-AUUA AAA--U-U-- ------CU-U C-UU-AGAGG -GA---CCG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCGA-GC-C G-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CA-UG-U UCU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GG 5881 CC--UAGA-- GG-UC----C --GGG-CAAC --CCGC-UGA -AA-CU-CC- UU-C-G-UG- 5941 CUG-GGGAU- UGG---GG-U U-UGCAAUU- A-UCCCCCA- UA-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-A-CA CG-----CG- --GUGGC--- ---------- 6181 ---------- ---------- ---------U UCACGGCC-- --GU-CGGC- ----G----- 6241 ---------- ---------- -U---U-G-C U-GG---GAA G---UUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Arps.erina 7872 bp RNA RNA 02-JUL-1998 DEFINITION Archaeopsylla erinacei (flea). REFERENCE 1 AUTHORS Chalwatzis,N. and Zimmermann,F.K. TITLE JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: X89486|g1149564 common_name= flea BASE COUNT 476 a 435 c 519 g 496 u 5946 others ORIGIN 1 .........U ACCUGGU-GG A--U-CC-UG CC-AG-UA-G U--AUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------GCA AGCCACAUUA 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC GAA-UGGC-U -C-AUUA-CA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACCCACAU UA-------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA AUAGA----- ---------- ---------- 361 --G-UUCC-- -----GACCA ---------- ---------- ---------- -----GAGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---GGA-AU- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------C GGUGG-CGGG CUUGC----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUUGCUCAC 901 CG-------- ---------- ---------- ---------- ---------- -------UUU 961 GAC--U-UGG U---GACUCU --GA-AUAAC UUUGUGCUGA -------UC- G----CA--- 1021 -CG----GU- ---------C UCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GU -UUCU-GCG- ACU----ACC A-UGGU-UG- 1201 UUA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-GCC---- -C--CG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUAGAG-GG- 2041 -CCA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUCU 2221 G--------- ----UGUCCC ACACUGUCGG UUCACCGCUC GCG----GUG UUCAACUGGC 2281 AUGUC-UGUG GGACGUCCUA CCGGUGGGCU UAGCCCGUCA AAAGGCGGCC ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CA ACU-CAAAAU 2821 CC-UACCAC- GGU-GCUC-- -UUCACC--- GAG-U--GU- C-GA------ GG-UGGG--C 2881 C--GG---UA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUU-A-AA-G -C-AGGC--- 2941 U-CAUU---- ---------- ---------- ---------- ---CGCCU-- --GAAUAU-U 3001 GUGUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG AAUU-CCGAG G-UAA-UGAU UAAUA-GGGA C-AACU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GGAC-AGAAG C-GAAA--GC A---UUUG-C C-AAA----- ---UGUGUUU 3541 U-C--AU-CA A-UC-AA-GA A-CGAAA--G UUAGAG-UUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAGCU--- AGC------- 3661 ----GAU--- ----CCGCCG A----A---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCG- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CUGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-GC G-U-ACUUU- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---CCGGUAU CGCAAAGGCC 5461 CUCCGGUUCG GCUUCGGUCG UUUUCGGUUG UGGUUCUUAC UACCGGCGUA C--------- 5521 --ACA----- UAU--A-U-- ------CU-U C-UU-AGAGG -GA---CAG- G-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUUUA-GU-C G-C-ACG-AA -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGGA-U-C 5761 AG-CA-GG-U UUU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GG 5881 CC--GAAA-- GG-UC----C --GGG-UAAU --CCGU-UGA -AG-CC-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- C-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-U A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-G-UG CG-----CG- --GCAGCGU- ---------- 6181 ---------- ---------- ---------- ----UUCG-- ACAU-UGCC- ----G----- 6241 ---------- ---------A UGU--U-G-C U-GG---GAA G---AUGA-C CAAA-CUA-G 6301 A-U-UA-UUU AG-AGGA--- AGU-AAAAA- UCGUAA--C- AA-G-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Aede.albop 7872 bp RNA RNA 02-JUL-1998 DEFINITION Aedes albopictus (forest day mosquito; Asian tiger mosquito). REFERENCE 1 AUTHORS Baldridge,G.D. and Fallon,A.M. TITLE Nucleotide sequence of a mosquito 18S ribosomal RNA gene JOURNAL Biochim. Biophys. Acta 1089, 396-400 (1991) COMMENT Corresponding GenBank entry: X57172|g5552 clone= E5 dev_stage= larvae legacy_attribute= chromosome=3 common_name= forest day mosquito; Asian tiger mosquito cell_line= ATC-15 BASE COUNT 545 a 399 c 495 g 511 u 5922 others ORIGIN 1 .........A UUCUGGU-UG A--U-CC-UA CC-AG-UA-A U--AUACGCU -UGU-CUC-A 61 AA-GGUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA AACAGAUUUA 121 ---------- ----AUGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AUA-AGGC-U -C-AGUA-UA -ACAG-CUAU -AA-UUUAC- -AAGA-UC-- 241 AUUUAACUAG UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 AA-AAU-CUA GAGCUAA-U- --ACAUGCAA AAU------- ---------- ---------- 361 --G-CAGG-- -----AACC- ---------- ---------- ---------- -----UCGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---CCU-GU- ---GCAA-UU -AUUA---GU CAA------- --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- ------CGUC CUCCGU---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACG----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 CUG-GA-GUU G---AAAUCU --GG-AUAAU UUUGCUGA-- -------UC- G----UA--- 1021 -UG----GU- ---------C UCGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGA- -C-GA-CAGA -UCU-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUAUUG- -AUGGUA-GU -AUAG-AGG- ACU----ACC A-UGGU-UG- 1201 CAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- GAG------- ----AAAUAA -CAAU----- -AU-AA---- 1861 -GACUC---- -UUUUAU--G AC-G-U---- -C-UUA-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------U-GA GCAU-AAAUC CUUCA----- -------ACA A-GG-AUCAA GUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCACU-AG-C 2101 GUAU-AUU-- AAAAUUGU-U --GCGGUU-- ----AAAACG UUCGAAGUUU ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AUUCU 2221 U--------- ----GUCCAA CACGGGUGCU ACUCCUUUAU GAUGGCAGUA GGUCACUGGA 2281 UUGUUGCGAC UAUAAGACUG GGUGCGCCCG UCGGCCUCGC GGUCGGCGCG ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------GU CGU-AGUGU- 2821 GG---CGCU- GAU-GCCU-- -UUCAUC--- GGG-U--GC- A-GUGUUU-- CC-GCAA--G 2881 CCCAGC--UG --CUAUUACC UUG-AACAAA U-UAGAGU-G CUC-U-AA-G -C-AGGC--- 2941 U-AUCCUAC- ---------- ---------- ---------- ---GGCCG-- -AGAAUAA-- 3001 C-UUGCA-UG G-AAUAAU-G GAAU-AUGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------CUU AA-UAUU--C AUUGGUUUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ----UAAUCA GAUC-AAGAG G-UAA-UGAU UAACA-GAAG U-AGUU---- ---------G 3421 GGGGCA-UU- AG--UA-U-U ACGG-C-G-C G-A-GAG-GU GAAA-UUC-G UAGACCGU-C 3481 GU-A-AG-AC UAAC-UAAAG C-GAAA--CG A---UUUG-C C-AUG----- ---GAUGCUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GAU -CGA--GGCG --AUUA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CG-U -AAACUAU-G -CCAAUU--- AGC------- 3661 ----AAU--- ----UGGGAG -----A---- -CG-CUA--- ---------- --CAUUA--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------UG -GUG-----C --U-CUCA-- ----GUA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAA-U U----AGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GU-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-A-AC-U UA-U-UGAGG UAA-G-ACA- 4621 GA--UUAAUA GC--UCUUU- CUCAAAA-U- UAAG-GG-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUCG -U-GGA-AUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G UGA-C-UC-A AUCAA-AUUA A-AUA-G-AA --C---GCU- -----AU--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- --CAGCAGUC AGAUGUUUGA UACCGACGGU UCGGGCAACG GUCGCUCGCG 5461 CGUCGCGCUC GGCCGGCGGU GUAGUGUGAC CUGAUAAUAC GUCAACCCAU C------GU- 5521 --GGU--UGA C----U-U-- ------CU-G C-UU-AAUAG -GA---CAA- U-UU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUCA-GC-A A-A-AUG-AG -AUUGAG-C- GAUAACAGG- UCCG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CAAU-GU -GCGCA-G-C 5761 AA-CG-CG-U AU-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GC 5881 CC--GAAA-- GG-GC----C --GGG-AAAU --CG-C-UUA -AA----UG- CG-C-A-U-- 5941 UUA-G---U- CG----GG-A U---GAAAU- G-GUCCAUA- UG-AA-C-CU GGA-AUUCC- 6001 --AGUA-A-G U-GCU-GG-U CAUUAG--CU A-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- U---GGAU-U A-UU-U-AG- 6121 UGAGGU-CUU -UGAA----- --GGU-G-AA CAUUU--GC- --UAGUC--- ---------- 6181 ---------- ---------- --CCUCGGGA UUACAUUU-- --GA-AUCG- --CUG----- 6241 ---------- -------AAG -----U-U-G A-CC---GAA C---UUGA-C CGAA-CUU-G 6301 A-U-GA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Dros.melan 7872 bp RNA RNA 02-JUL-1998 DEFINITION Drosophila melanogaster (fruit fly). REFERENCE 1 AUTHORS Tautz,D., Hancock,J.M., Webb,D.A., Tautz,C. and Dover,G.A. TITLE Complete sequences of the rRNA genes of Drosophila melanogaster JOURNAL Mol. Biol. Evol. 5, 366-376 (1988) REFERENCE 2 AUTHORS Tautz,D., Tautz,C., Webb,D. and Dover,G.A. TITLE Evolutionary divergence of promoters and spacers in the rDNA family of four Drosophila species: Implications for molecular coevolution in multigene families JOURNAL J. Mol. Biol. 195, 525-542 (1987) COMMENT Corresponding GenBank entry: M21017 legacy_attribute= clone pDm238 common_name= fruit fly BASE COUNT 563 a 375 c 473 g 584 u 5877 others ORIGIN 1 .........A UUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-UAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACA CACGAAUUAA 121 ---------- ----AAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AUUA-UA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUUAACAGUU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA UUAAA----- ---------- ---------- 361 --A-CAUG-- -----AACC- ---------- ---------- ---------- -----UUAU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---CGU-GU- ---GCUU-UU -AUU---AGG CUAA------ --AACCAAG- ---------- 601 ---------- ---------- ---------- ---------- -----CGAUC GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GAUCG---- 901 ---------- ---------- ---------- ---------- ---------- -------UUA 961 UAU--U-GGU U--GAACUCU A--G-AUAAC AUGCAGA--- -------UC- G----UA--- 1021 -UG----GU- ---------C UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGA- -C-GA-CAGA -UCU-UUC-A AAUGU-CUGC 1141 --CCU-AUC- AA-CUUUUG- -AUGGUA-GU -AUCU-AGG- ACU----ACC A-UGGU-UG- 1201 CAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AC-UCCC- ---AGCUC-- 1801 ---GGGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GACUC---- -AUAUCC--G AG-G-C---- -C-CUG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACA A-GG-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAACG UUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 G--------- ----UGCUUC AUACGGGUAG UACAACUUAC AAUU---GUG GUUAGUACUA 2281 UACCUUUAUG UAUGUAAGCG UAUUACCGGU GGAGUUCUUA UAUGUGAUUA AAUACUUGUA 2341 UUUUUUCAUA UGUUCCUCCU A--------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------UU UAA-AAACC- 2821 UG---CAUU- AGU-GCUC-- -UUAAAC--- GAG-U--GU- U-AU------ UG-UGGG--C 2881 C--GG---UA --CUAUUACU UUG-AACAAA U-UAGAGU-G CUU-A-AA-G -C-AGGC--- 2941 U-UCAAA--- ---------- ---------- ---------- ---UGCCU-- --GAAUAU-U 3001 CUGUGCA-UG G-GAUAAU-G AAAU-AAGA- C--C-UCUG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UG-CUUU--C AUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UCA GAUC-AAGAG G-UAA-UGAU UAAUA-GAAG C-AGUU---- --------UG 3421 GGGGCA-UU- AG--UA-U-U ACGA-C-G-C G-A-GAG-GU GAAA-UUC-U UGGACCGU-C 3481 GU-A-AG-AC UAAC-UUAAG C-GAAA--GC A---UUUG-C C-AAA----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAGCU--- AGC------- 3661 -----A---- ----AUUGGG -----UGU-- -AG-CUA--- ---------- --CUUUUA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 --------UG -GCU--CU-C --U-CAGU-- -----C---- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UUUUUGGG-C -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- --G-A-AC-A UA-A-GUGUG UAA-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUCGAAU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUCG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-A AAUAU-AUUA A-AUA-G-AU A-U---CUUC A----GG-AU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --------UA UGGUGCUGAA GCUUAUGUAG CCUUCAUUCA UGUUGGCAGU AAAAUGCUUA 5461 UUGUGUUUGA AUGUGUUUAU GUAAGUGGAG CCGUACCUGU UGGUUUGUCC C----AUUA- 5521 UAAGG---AC ACU--A-G-- ------CU-U C-UU-AAAUG -GA---CAA- A-UU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GC-A A-U-AAUGAG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGCGC UA-CAAU-GA -AAGUA-U-C 5761 AA-CG-UG-U AUUU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------A-GA 5881 CC--GAGA-- GG-UC----C --GGGUAAAC --CG-C-UGA -AC-CA-CU- UU-C-A-UG- 5941 CUU-GGGAU- UGU---GA-A C-UGAAACU- G--UUCACGA UG-AA-C-UU GGA-AUUCC- 6001 C-AGUA-A-G U-GUG-AG-U CAUUAA--CU C-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-U A-UU-U-AG- 6121 UGAGGU-CUC -CGGA----- --CGU-G-A- UCACUGU--- --GACGC--- ---------- 6181 ---------- ---------- ---------- ---CUUGC-- --GU-GUU-- ---------- 6241 ---------- -----ACGGU UGU--U-U-C G-CA---AAA G---UUGA-C CGAA-CUU-G 6301 A-U-UA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Rgas.nebul 7872 bp RNA RNA 02-JUL-1998 DEFINITION Rhaphigaster nebulosa (stink bug insect). REFERENCE 1 AUTHORS Chalwatzis,N. and Zimmermann,F.K. TITLE JOURNAL Unpublished (1996) COMMENT Corresponding GenBank entry: X89495|g1150554 common_name= stink bug insect BASE COUNT 475 a 473 c 526 g 450 u 5948 others ORIGIN 1 .........U ACCUGGU-GG A--U-CC-UG CC-AG-UA-G U-UAUAUGCU -UGU-CUC-A 61 AA-GCUUAA- -GCCAUGC-A AGU-CUCAGU ---------- -------ACG AGCUGACUUA 121 ---------- ----AAGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AGUA-AA -CCGG-UCAU -AG-UUUAC- -CGGA-UA-- 241 UAUGCCACUC A--------- ---------- --------CG -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA CCAA------ ---------- ---------- 361 --G-UCCC-- -----GACCA ---------- ---------- ---------- -----GCGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---AGG-AC- ---GCUU-UU -AUU--GGAU CAAA------ --ACCAU-U- ---------- 601 ---------- ---------- ---------- ---------- ---CGCCCGG CUCGC----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGGGCG-- 901 ---------- ---------- ---------- ---------- ---------- --------UC 961 UGC--U-UGA U---GACUCU A--G-AUAAC ACCACAGA-- -------UC- G----CA--- 1021 -CG----GU- ---------C ACAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGUA -UCC-GUC-A AAUGU-CUGA 1141 --CUU-AUC- AG-CUGUCG- -AUGGUA-GA -CUCU-GUG- UCU----ACC A-UGGC-GC- 1201 UCA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C-GGGGA-G GUA-GUGAC- AAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA CCCU-AAAUC CUUUA----- -------ACG A-GG-AUCUA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GUUCU 2221 G--------- ----CGUGCC ACGCUGUCGG UUCACCGCCU GUCG---GUG C-AACUGGCA 2281 UGCCGUGGC- AUGUCCUGUC GGUGGCUGAC GGGCUUCGCG GCGCGCCCCA CUCGCUGCAC 2341 GCGUGUGGGU CGACGCGCCG UGUUGUC--- -CUCGUUGGC ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CG GCU-CAAUC- 2821 CU--ACCGC- GGU-GCUC-- -UUAAAC--- GAG-U--GU- C-GA------ GG-UAGG--C 2881 C--GA---CA -CUGUUUACU UUG-AACAAA U-UAGAGU-G CUU-C-AA-G -C-AGGC--- 2941 U-CUGAAAGC ---------- ---------- ---------- ---AGCCU-- --GAAUAG-U 3001 G-GUGCA-UG G-AAUAAU-G GAAC-AGGA- C--C-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUCC ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------GG AAUC--CAAG G-UAA-UGAU CAAUA-AGGA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GCAC-UAGAG C-GAAA--GC A---UUUG-C C-AAG----- ---UAUGUCU 3541 U-A--AU-UG A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAGCC--- AGC------- 3661 ----GAU--- ----CCGCCG A----U---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GGA--- --------GC U-UUC-CCC- 3901 ---------- GGGAAA-CC- A----AAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UU-G-GAAGG AUU-G-ACA- 4621 GA--UCGAUA GC--UCUUU- CUCGAUU-C- AGUG-GG-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-CUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U GACCU-AUUA A-CUA-G-GC G-CUC----- -----CC-GG 5221 UA-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---UAAAUAC C--UACCGG- 5521 -CGAC---AA UUA--U-U-- ------CU-U C-UU-AAGGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCUCA-GC-C G-C-ACG-AG -AUUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U UCUC------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CC--GAAA-- GG-UC----C --GGGCAACC --CG-C-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGAAU- UGG---GG-C U-UGCAAUU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-G-CG GUAACCGGC- --ACCGG--- ---------- 6181 ---------- ---------- ---------- ---CUCGU-- --UC-GGUAU ----C----- 6241 ---------- ------GGUU --U--C-G-C U-GG---AAA G---AUGA-C CGAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Spss.festi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Spissistilus festinus (three-cornered alfalfa treehopper). REFERENCE 1 AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny: eco-evolutionary and cladistic implications within pre-Heteropterodea Hemiptera (s.l.) and a proposal for new monophyletic suborders JOURNAL Pan-Pacific Entomol. 71, 31-60 (1995) REFERENCE 2 AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-88 (1994) COMMENT Corresponding GenBank entry: U06477|g532980 common_name= three-cornered alfalfa treehopper BASE COUNT 472 a 441 c 523 g 464 u 5972 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-CUAAGU ---------- -------AUA AGCCAAAUUA 121 ---------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UGGA-UC-- 241 GUACAAUCCA UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACAGA----- ---------- ---------- 361 --A-UCCC-- -----GACCA ---------- ---------- ---------- -----GAGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---GGG-AC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGG CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUCCG---- 901 ---------- ---------- ---------- ---------- ---------- -------CAC 961 UUC--U-UGG U---GACUCU --GA-AUAAC UUUAAGCUGA -------UC- G----CA--- 1021 -AG----GU- ---------C CUAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGA 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GA -UUCU-GCG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C--GGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GU-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGC-G-CC A-GC-C-CCC -GCGG-CAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G--------- ----UGUCUA ACGGUGUCGG UUCACCGCUC GCG----GUG U-AACUGGCG 2281 CGCCGGUUGG ACGUCCUGCC GGUGGGGGUG CGGGCUCUCG GUCUUGUCUA GGUUCGCCGA 2341 AGCAUGCCGU GAGUUCCGGC CGC------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CG AUU-CAAUC- 2821 CC--GCCGC- GGU-GCUC-- -UUAACU--- GAG-U--GU- C-GA------ GG-UGGG--C 2881 C--GG---CA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUU-A-AA-G -C-AGGC--- 2941 U-GAUUUC-- ---------- ---------- ---------- ---CGCCU-- --GAAUAC-U 3001 GUGUGCA-UG G-AAUAAU-G GAAU-AGGA- C--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AAG AAUC-CGAAG G-UAA-UGAU UAAUA-GGGA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGG-C-G-U U-A-GAG-GC GAAA-UUC-U UGGUUCGU-C 3481 GC-A-AG-AC GUAC-CUAAG C-GAAA--GC A---UUUG-C C-AAG----- ---UAUGUCC 3541 U-C--GU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAGCC--- AGC------- 3661 ----GAU--- ----CCGCCA A----A---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UU --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-CUA-G-GC G-----UUU- -----CU-GG 5221 UA-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --------UC CACAAUAGUG C--UACCAG- 5521 -CGAA---UA AAU--U-U-- ------CU-U C-UU-AGAGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCUA-GC-C G---ACG-AG -ACUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U CUU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GG 5881 CC--GAAA-- GG-UC----C --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CUG-G-UG CG-CGGUG-- --AUCGC--- ---------- 6181 ---------- ---------- ---------- ---CUCGU-- --GU-GGU-- ----C----- 6241 ---------- -----ACCGA UGU--U-G-C C-GG---GAA G---AUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA .......... 7861 .......... .. // LOCUS Phla.spumr 7872 bp RNA RNA 02-JUL-1998 DEFINITION Philaenus spumarius (meadow spittlebug). REFERENCE 1 AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny: eco-evolutionary and cladistic implications within pre-Heteropterodea Hemiptera (s.l.) and a proposal for new monophyletic suborders JOURNAL Pan-Pacific Entomol. 71, 31-60 (1995) REFERENCE 2 AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-88 (1994) COMMENT Corresponding GenBank entry: U06480|g532983 common_name= meadow spittlebug BASE COUNT 455 a 459 c 530 g 466 u 5962 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-CUCAGU ---------- -------ACG AGCCGCAUUA 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UAGA-UC-- 241 GUACAAUCCC UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACAGA----- ---------- ---------- 361 --G-UCCC-- -----GACCA ---------- ---------- ---------- -----GAGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---GGG-AC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----CGGUG CCCGGUCCGC 661 C--------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CGCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------UU 961 UCC--U-UGG U---GACUCU --GA-AUAAC UUUUGGCUGA -------UC- G----CA--- 1021 -CG----GU- ---------C UUAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGA 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GA -UUCU-GCG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-AC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C--GGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUC CUUUA----- -------ACG A-GU-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UUGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G--------- ----UGUUCC ACGCUGUCGG UUCGCCGCCC GUCG---GUG UUAACUGGCA 2281 UGCCUGUGGA ACGUCCUGCC GGUGCCGGUC CGGGCUCUCG GUGAGCGUAG GGUUCGCCUG 2341 AAGCUGGUCU UGUAGUUCCG GCCGC----- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CG GUC-AUAUC- 2821 CC--GCCAC- GGU-GCUC-- -UUCACC--- GAG-U--GU- C-GA------ GG-UGGG--C 2881 C--GG---CA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUU-A-AA-G -C-AGGC--- 2941 U-UGUGUC-- ---------- ---------- ---------- ---CGCCU-- --GAAUAC-U 3001 GUGUGCA-UG G-AAUAAU-G GAAU-AGGA- U--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUUC ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------GG AACC--CGAG G-UAA-UGAU UAAUA-GGGA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GAAC-CUAAG C-GAAA--GC A---UUUG-C C-AAG----- ---UAUGUCC 3541 U-C--GU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CG-U -AAACGAU-G -CCAGCC--- AGC------- 3661 ----GAU--- ----CCGCCG A----C---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CGUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-CUA-G-GC G-----AUU- ---U-CC-GG 5221 UA-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --------CC CACAAUAGUG U--UACCGG- 5521 -CGAU---UC AAU--U-U-- ------CU-U C-UU-AGAGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCCUA-GC-C G---ACG-AG -ACUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAU-U-C 5761 AG-CG-UG-U CUU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GG 5881 CC--GACA-- GG-CC----C --GGGUAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- U-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CUG-G-UG CG-CGGCG-- --AUCGU--- ---------- 6181 ---------- ---------- ---------- ---CUCGU-- --AC-GGC-- ----C----- 6241 ---------- -----GCCGA UGU--U-G-C C-GG---AAA G---AUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA .......... 7861 .......... .. // LOCUS Okng.utahn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Okanagana utahensis (cicada). REFERENCE 1 AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny: eco-evolutionary and cladistic implications within pre-Heteropterodea Hemiptera (s.l.) and a proposal for new monophyletic suborders JOURNAL Pan-Pacific Entomol. 71, 31-60 (1995) REFERENCE 2 AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-88 (1994) COMMENT Corresponding GenBank entry: U06478|g532981 common_name= cicada BASE COUNT 467 a 471 c 535 g 444 u 5955 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-CUCAGU ---------- -------ACA UACCUAACUA 121 ---------- ----AGGUGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UGGA-UC-- 241 UUAACCCGUU A--------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACAA------ ---------- ---------- 361 --G-UCCC-- -----GACCA ---------- ---------- ---------- -----GAGA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---GGG-AC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCGA-UC ---------- 601 ---------- ---------- ---------- ---------- -GGCGUCCGG UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGG-CGCC 901 ---------- ---------- ---------- ---------- ---------- ------GUCU 961 CUU--U-UGG U---GACUCU --GG-AUAAC UUUUAGCCGA -------UC- G----CA--- 1021 -CG----GU- ---------C CAAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCU-UUC-A AAUGU-CUGA 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GG -CUCU-GCG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C---GGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA CUUU-AAAUA CUUUA----- -------ACG A-GU-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G--------- ----UGUGCC ACGCUGUCGG UUCACCGCCC GUCG---GUG UCAACUGGCA 2281 UGUCUGUGGG ACGUCCUGCC GGUGGCGGNC ACGGGCGCCC GGCCGUGCGU AGGGGCACGU 2341 CCCCGAAGCA CGCCGGCGCG UCCCGGUCCG C--------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------CG AUC-CAAUC- 2821 CC--GCCGC- GGU-GCUC-- -UUCACU--- GAG-U--GU- C-GA------ GG-CGGG--C 2881 C--GG---CA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUC-A-AA-U -C-AGGU--- 2941 C-CUCUUUA- ---------- ---------- ---------- ---GGCCU-- --GAAUAC-U 3001 GUGUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUUU ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG AACC--AGAG G-UAA-UGAU UAAUA-GGGA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAAA-UUC-U UGGAUCGU-C 3481 GC-A-AG-AC GAAC-CUAAG C-GAAA--GC A---UUUG-C C-AAG----- ---UAUGUUC 3541 C-C--GU-UA A-UC-AA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACGAU-G -CCAGCC--- AGC------- 3661 ----GAU--- ----CCGCCG A----A---- -GU-U----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AACCUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGGU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-GCUA A-AUA-G-AC G-A---UUU- -----CC-GG 5221 UA-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --------UC CACAAUAGUG C--UACCGG- 5521 -CGAA--AUC AAU--A-U-- ------CU-U C-UU-AGAGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUUUA-GC-C G---ACG-AA -ACUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U ACA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GG 5881 CC--GAAA-- GG-CC----C --GGGCAACC --CG-U-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUA-GGGAU- UGG---GG-C U-UGCAAUU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CUG-G-UG CG-CGGCG-- --ACCGC--- ---------- 6181 ---------- ---------- ---------- ---CUCGC-- --GC-GGC-- ----C----- 6241 ---------- -----GCCGA UGC--C-A-C C-GG---GAA G---AUGA-C CGAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA .......... 7861 .......... .. // LOCUS Prkl.margn 7872 bp RNA RNA 02-JUL-1998 DEFINITION Prokelisia marginata (planthopper). REFERENCE 1 AUTHORS Campbell,B.C., Steffen-Campbell,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-88 (1994) COMMENT Corresponding GenBank entry: U09207|g533093 common_name= planthopper BASE COUNT 462 a 452 c 527 g 471 u 5960 others ORIGIN 1 .......... ..CUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-CUCAGU ---------- -------ACA AGCCACAUUA 121 ---------- ----AGGCGA A--------- ---------- ---------- ---------A 181 C-C-----GC AAA-AGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUCCU- -UGGA-UC-- 241 GUACAAUCCA UUA------- ---------- --------CU -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAA ACAGA----- ---------- ---------- 361 --G-UCCC-- -----GACCA ---------- ---------- ---------- -----GAAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----UGGAA- 541 ---GGG-GC- ---GCUU-UU -AUUA--GAU CAAA------ --ACCAA-UC GACGU----- 601 ---------- ---------- ---------- ---------- ---CAGUUGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCAACUG-- 901 ---------- ---------- ---------- ---------- ---------- --CGCCGUAC 961 UCC--U-UGG U---GACUCU --GA-AUAAC UUUUGGCAGA -------UC- G----CA--- 1021 -CG----GU- ---------C UCAGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----ACCGG- -C-GA-CGCA -UCC-UUC-A AAUGU-CUGC 1141 --CUU-AUC- AA-CUGUCG- -AUGGUA-GG -UUCU-GCG- CCU----ACC A-UGGU-UG- 1201 UAA-CGGG-U -AACGGGGAA U-CAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AC-UCCCG ----GCA--- 1801 -C--GGGA-G GUA-GUGAC- GAA------- ----AAAUAA -CGAU----- -AC-GG---- 1861 -GACUC---- --AUCC---G AG-G-C---- -C-CCG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-UA CUCU-AAAUC CUUGU----- -------ACA A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 G--------- ----UGUCCU UCCGCA--GG UUCACCGCCU GUCG---GUG CCAACUGGCG 2281 UUUUGCGGG- ACGUCCUGUC GGUGGUGUGU CAGGAAUCUU AGUUGUGCUA UGCUUUGCUU 2341 AGUGCAGCUC UGGUUUCGGG CCAC------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------UU UCA-UAAUC- 2821 CC--GCCGC- GGU-GCUC-- -UUAAUC--- GAG-U--GU- C-GA------ GG-CGGG--C 2881 C--GG---CA --CGUUUACU UUG-AACAAA U-UAGAGU-G CUU-C-AA-G -C-AGGC--- 2941 U-UGUCA--- ---------- ---------- ---------- ---CGCCU-- --GUAUAC-U 3001 GUGUGCA-UG G-AAUAAU-G GAAU-AGGA- C--C-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUCC ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------GG AAUC--UGAG G-UAA-UGAU CAAUG-GGGA C-AGGC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U GCGA-C-G-U U-A-GAG-GU GAA--UUC-U UGGAUCGU-C 3481 GC-A-AG-AG CGAC-CGAAG C-GAAA--GC A---UUUG-C CGAAG----- ---UAUGUUC 3541 C-C--GU-CG A-UCGAA-GA A-CGAAA--G UUAGAG-GUU -CGAA-GGCG --AUCA-G-A 3601 UAC-C-GC-- CCUAGUUCU- A--AC-CA-U -AAACAAU-G -CCUGCC--- AGC------- 3661 ----GAU--- ----CCGCCG G----C---- -GU-C----- ---------- --CCUCCGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --G-GCGG-- ----GCA--- --------GC U-UCC----- 3901 ---------- GGGAAA-CC- A----GAG-C UUU-UGGG-U -UCC-GGGGG -AAG-UAUGG 3961 U-U-GCAA-A GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGCC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A CC-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- GGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGA-C-UC-U AGCCU-ACUA A-CUA-G-AC G-----UAU- -----GU-GG 5221 UA-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- --------UC AGCAAUCGUG C--UACCAG- 5521 -CGAU---CA UAU--C-U-- ------CU-U C-UU-AGAGG -GA---CAG- G-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UUCUA-GC-C G-C-ACG-AG -ACUGAG-C- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -AGGAA-U-C 5761 AG-CG-UG-U CUU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC ------U-GU 5881 CC--GAAA-- GG-AC----C --GGGUAACC --CG-C-UGA -AC-CU-CC- UU-C-G-UG- 5941 CUU-GGGAU- UGG---GG-C U-UGCAAUU- G-UUCCCCA- UG-AA-C-GA GGA-AUUCC- 6001 C-AGUA-A-G C-GCG-AG-U CAUAAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-G A-UU-U-AG- 6121 UGAGGU-CUU -CGGA----- --CCG-G-UG CG-CGGAG-- --GCGGU--- ---------- 6181 ---------- ---------- ---------- ---UUUCC-- --GC-U-C-- ---------- 6241 ---------- ------CCGA UGU--U-G-U C-GG---AAA G---AUGA-C CAAA-CUU-G 6301 A-U-CA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA .......... 7861 .......... .. // LOCUS Eugp.rotun 7872 bp RNA RNA 02-JUL-1998 DEFINITION Euglypha rotunda CCAP 1520/1 (euglyphid). REFERENCE 1 AUTHORS Bhattacharya,D., Helmchen,T. and Melkonian,M. TITLE Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta JOURNAL J. Eukaryot. Microbiol. 42 (1), 65-69 (1995) REFERENCE 2 AUTHORS Bhattacharya,D., Surek,B., Ruesing,M., Damberger,S. and Melkonian,M. TITLE Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae) JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 9916-9920 (1994) COMMENT Corresponding GenBank entry: X77692|g541673 (bases 22 to 1786) common_name= euglyphid NB: this seq retains primer binding sequences BASE COUNT 484 a 364 c 457 g 506 u 6061 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-- A-CAUAUGCU -UGU-CUC-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACAACUUUA 121 UA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GUA-CAGC-U -C-AUUA-UA -UCAG-CAAU -UA-UUUAU- -UUGA-UG-- 241 GUACCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAC AAA------- ---------- ---------- 361 --G-UCCC-- -----AACUC ---------- ---------- ---------- -----UUGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----GGGGA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA CAAA------ --ACCA---- ---------- 601 ---------- ---------- ---------- ---------- ---AUACCAC CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUGGCUAUU 901 C--------- ---------- ---------- ---------- ---------- ---------- 961 -------UGG U---GACUCA --UA-AUAAC UGAUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UAGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AG-CUUUCG- -AUGGUA-GU -GUAA-AGG- ACU----ACC A-UGGC-UA- 1201 UAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CGAU----- -AC-CG---- 1861 -GGCC----- -UUAAUC--- GG-U-C---- -U--GG-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCCA CUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-AU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GAAC--- -CAAA----- 2521 -------UUG GCCCGUU--- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- CC----UUUC ------GGG- 2641 --------UA UGAGUGCCGC ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- UUG----A-G UUU------- GU-CA----- UCCUUCCAGA GAG--CUGCG 2821 UC--UACCG- ---------- UUUACUC-G- -GCCG-GAC- -G-------U AU--GCG-AU 2881 CU-GG---AU --CUAUUACU UUG-AAAAAA U-UAGAGU-G UUU-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCUGU- --GAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AUUU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACU---GAA G-UAA-UGAU UGAUA-GGGA U-AGUU---- ---------G 3421 GGGGUG-CU- AG--UA-U-U CCAC-G-G-C C-A-GAG-GU GAAA-UUC-U UGGAUUCG-U 3481 GG-A-AG-AC UAAC-UACUG C-GAAA--GC A---UUCA-C C-AAG----- ---GAUGUCU 3541 U-C--UU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUC- A--AC-CA-U -AAACUAU-A -CCGACU-C- AGG------- 3661 -----AU--- ----CAGUGA A----C---- -GU-UG---- ---------- --CAUUU--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------C -GAC----UU --C-AUUG-- ----GCA--- --------CU G-UGU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAAG A---UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-G A-CCU-GCUA A-AUA-G-UU C-----UUG- -----UC--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----AUCGUG A------GA- 5521 --UGG--CUG --GA-U-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GGAUA-GC-C G-A-UGGAAG -UUCGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UACGU-U-C 5761 AU-CG-AG-C UCUA------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GA 5881 CU--GAAA-- AG-UC----U --GGG-UAAU --CUUC-UCA -AC-GC-GU- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGUAAUU- U-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCG-CG-U CAUUAA--CG C-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GGAU-G G-UU-U-AG- 6121 UGAGGU-UCA -CGGA----- --CUG-U--U GCCUCU---- -----GG--- ---------- 6181 ---------- ---------- -------UUG GUUUCCUU-- --CC-UU--- ---------- 6241 ---------- --------UG -GC--A-U-A C-UG---GAA G---UGAC-C CAAA-CUU-G 6301 A-U-CA-UCU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------G -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Clra.rptns 7872 bp RNA RNA 02-JUL-1998 DEFINITION Chlorarachnion reptans str. Grell (Tunisia) (amoeboflagellate). REFERENCE 1 AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J.B., Adcock,G.J. and Maier,U.G. TITLE JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: X70809|g416517 common_name= amoeboflagellate isolate_name= Grell (Tunisia) BASE COUNT 444 a 377 c 480 g 492 u 6079 others ORIGIN 1 .......... .CCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUG AACAACUUU- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC AGA-UGGC-U -C-AUUA-AA -CCAG-GAAU -AA-UUUUU- -UUGA-UG-- 241 GUGACAAACU A--------- ---------- --------CA -U-GG-AUAU C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU CGA------- ---------- ---------- 361 ----CACC-- ---------- ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---GGU-G-- ---GUAU-UU -AUUA-GAUC CGA------- --ACCAA-G- ---------- 601 ---------- ---------- ---------- ---------- --------CC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGG------ 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UUC--U-UGG U---GAAUCA --UG-AUAAC UGUUCGUA-- -------UU- G----C---- 1021 -C--A--G-- ---------C UCUG------ ---------- ---------- ---------- 1081 ---------- ---------- ----CCAGG- -C-GA-AAGU -UCA-UUC-A AAUUU-CUGC 1141 --CCA-AUC- AG-CUAUUG- -ACGGUA-GU -GUAG-UGG- ACU----ACC G-UGGC-UU- 1201 UAA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GUGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUUUACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAG------- ----AAAUAU -GAUG----- -AC-UG---- 1861 -UGCC----- -CUUUGC--- GG-C-A---- -G--AG-UUU -UUC------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGAGU----- 1981 ------G-UA AUGU-AAAUG CCUAU----- -------GCG A-GU-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAUGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUAU 2221 C-U--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --AUUGC--- -GU-U---G- 2521 ACGGCCC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------G- CC----UUC- ------GGU- 2641 ---------- ------UGGG UG-CU-GG-- -A-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UU- C-G------C UU-------- GC-CU----- -----AUUUC CGG-UUGGCG 2821 UC-----GG- -UU-CCC--- -UUUGUU--- -GG-GC-UA- UAGGGCCGUU UC--GCG-AU 2881 CC-GG---AU --CGUUUACU UUG-AAGAAA U-UCGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---CGCCG-- -UGAAGAU-U 3001 G-CAGCA-UG G-AAUGAU-G ACAU-AGAA- C-UG-UUGU- -G-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------UUC UA--UUU--U GUUGGUUCU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------G GGAC--CACA G-UGA-UGAU UGAUA-GGGA C-AGUU---- ---------G 3421 GGGGUG-CU- GC--UA-U-U CCGC-G-G-C C-A-GAG-GU GAAA-UUC-U CAGAUUCC-C 3481 GG-A-AG-AG CAAC-UUAUG C-GAAA--GC A---UUCA-C C-AAA----- ---GAUGUCU 3541 U-C--UU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUC- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGGGG A----C---- -GU-UG---- ---------- --UUUUAUC- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------C -GAC----UU --C-CUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCCCGGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG A-CA--CCA- 4021 CC-A-GAAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUU-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGA-A GA--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GC--GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-G A-CCU-GCUA A-AUA-G-CA G-C---GGU- -----AU-CG 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------U-C G---UCGAU- 5521 --GCC----- --C--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GA--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------U UCCAA-GC-C G-G-UGGAAG -UGCGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGUGU UA-CACU-GA -UGCGU-U-C 5761 AU-CA-AG-C UCCCC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC ----UUG-GC 5881 UC--GAGA-- GG-CC---UC --GGU--A-U --CU-U--GA -AA-UC-GC- AU-C-G-UG- 5941 CUA-GGGAC- AGA---CC-A U-UGUAAUU- U-UUGGUCU- CC-AA-C-GA GGA-AUUUC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAA--CU C-GCAU-U-G -AUUACGU-C CC-UGUCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-A- C-U-ACCGA- UU--GAAU-C A-UU-U-GG- 6121 UGAG-GUCCA -CGGA----- --CUG-U-C- GUAC------ UC-UCUUC-- ---------- 6181 ---------- ---------- ---------- ---CUCGU-- -GUU-GA--- ---------- 6241 ---------- ------UUGU -AC--U-U-C UUGG---GAA G---UGGC-A CGAA-CCU-G 6301 A-U-GA-UUU AG-AGGA--- AGU-AAAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Babs.bovi2 7872 bp RNA RNA 02-JUL-1998 DEFINITION Babesia bovis str. S (apicomplexan). REFERENCE 1 AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology in press (1993) COMMENT Corresponding GenBank entry: L19077|g304188 dev_stage= piroplasm common_name= apicomplexan isolate_name= S isolate_name= vaccine BASE COUNT 377 a 387 c 444 g 444 u 6220 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------ACC AGCUUGUUA- 121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-CA -ACAG-UUAU -AG-UUUCU- -UUGG-AG-- 241 UUCACUUUGC ---------- ---------- --------UA -U-GG-AUAA C-C-GCAC-- 301 UA-AUU-GUG UGGCUAA-U- --ACACGUUU GAG------- ---------- ---------- 361 ----GG---- ---------- ---------- ---------- ---------- -----UUUU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 -----C-CC- ---GCGU-UU -ACUG----- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- --------GU CUU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GU------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ----GAUUUA --CA-GUAAC CUGCGAC--- -------UC- G----C---- 1021 ---------- ---------U UUUU------ ---------- ---------- ---------- 1081 ---------- ---------- --------G- -C-GA-UAUU -CCA-UUC-A AGUUU-CUGA 1141 --CCC-AUC- AG-CU--UG- -ACGGUA-GG -GUAU-UGG- CCU----CCC G-AGGC-AU- 1201 CGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-NG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -CGAGA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAC -CAAU----- -AC-GG---- 1861 -GGC------ --UACU---- -G-C-U---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GCA UGGGG----- 1981 ------G-CG ACCU-UCACC CUCGC----- -------CCG A-GU-ACCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAACUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUCU 2221 C-A--C-GUC CCCCGCUU-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- GG---UCCUU U-----CC-- 2641 ---------- -------UCG C--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- CGGG------ AC-GC----- -------C-- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- --UCGUUACU UUG-AGAAAA U-UAGAGU-G UUU-C-AA-G -C-AGG---- 2941 U-UU------ ---------- ---------- ---------- ---CGCC--- -UGUAUAA-U 3001 U-GAGCA-UG G-AAUAAC-C UUGU-AUGA- C--C-C-UG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CG UA--CC---- GUUGGUU--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- GGCU--UUGG G-UAA-UGGU UAAUA-GGAA C-GGUU---- ---------G 3421 GGGGCA-UU- CG--UA-C-U CGAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 CG-A-UG-AC GCAC-GACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GACGCUU 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCU- A--AC-CU-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGUGG U----C---- -GU-C----- ---------- --GCCUC--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUCA-- ----GCA--- --------CC U-UGA----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G UC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AACCUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A GC-G-UAAGG AUU-G-ACA- 4621 GG--UUGAUU GU--CCUUU- CUUGAUU-C- UCUG-GG-UA ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GGA-C-G AGACC-UU-A A-CCU-GCUA U-UUA-G-U- ------CGC- U----CG-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ----UCUCUG U-----CCG- 5521 U-GCG----C -------A-- ------CU-U C-AU-AGAGG -GA---CUC- U-GCGGC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCAA-GCUG C-G-GUGAGG -UUUAAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCUU-G-C 5761 CU-CG-UG-U UU-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC ----CUC-GG 5881 CC--GAUA-- GG-CC---CU --GGU--AAC --C--C-CUA -GU-CU-GC- AU-C-G-UG- 5941 UUU-GGGAU- UGA---UC-U U-UGCAAUU- C-UAGAUCA- UG-AA-C-GA GGA-AUGCC- 6001 U-AGUA-U-G C-GCA-AG-U CAUCAG--CU U-GUGC-A-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UC--GAGU-G A-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --ACC-U-GC UUGC------ ---GCGA--- ---------- 6181 ---------- ---------- ---------- ----UCCG-- --UC-GC--- ---------- 6241 ---------- -------CGC -UC--G-C-G G-GC---CAA G---UUUU-G UGAA-CCU-U 6301 A-U-CA-CUU AA-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Thlr.parva 7872 bp RNA RNA 02-JUL-1998 DEFINITION Theileria parva (apicomplexan). REFERENCE 1 AUTHORS Allsopp,B.A., Baylis,H.A., Allsopp,M.T., Cavalier-Smith,T., Bishop,R.P., Carrington,D.M., Sohanpal,B. and Spooner,P. TITLE Discrimination between six species of Theileria using oligonucleotide probes which detect small subunit ribosomal RNA sequences JOURNAL Parasitology 107, 157-165 (1993) COMMENT Corresponding GenBank entry: L02366|g161867 tissue_type= piroplasm common_name= apicomplexan BASE COUNT 459 a 334 c 458 g 491 u 6130 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--A 121 UA-------- ----UGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-CA -ACAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 UUCGUUUUUA ---------- ---------- --------CA -U-GG-AUAA C-C-GUGC-- 301 UA-AUU-GUA GGGCUAA-U- --ACAUGUUC GAG------- ---------- ---------- 361 ----GCC--- ---------- ---------- ---------- ---------- -----AUUU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ----GG-CG- ---GCGU-UU -AUUA-GACC UAAA------ --ACC---AA ---------- 601 ---------- ---------- ---------- ---------- ------ACCG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CGGU----- 901 ---------- ---------- ---------- ---------- ---------- ---------G 961 UCC-----GG U---GAUUCA --UA-AUAAA UAUGCGAA-- -------UC- G----U---- 1021 -AC------- ---------U UA-------- ---------- ---------- ---------- 1081 ---------- ---------- ------GUG- -C-GA-UGUA -UCA-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUGG- -ACGGUA-GG -GUAU-UGG- CCU----ACC G-GGGC-AA- 1201 CGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-GG---- 1861 -GGCU----- --UAA----- AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUG----- 1981 ------G-GA AUUU-AAACC UCUUC----- -------CAG A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAAUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 C-U--G-CU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- GC-----AUC ------GC-- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- -------UU- GU--G----- --UCCCUUCG GGG-UCUCUG 2821 CA--U-GUG- -G--CUU--- AUUUCGGAC- -G--G--AG- ---UUCGCUU UG--UCU-G- 2881 --------GA --UGUUUACU UUG-AGAAAA U-UAGAGU-G CUC-A-AA-G -C-AGGC--- 2941 U-UU------ ---------- ---------- ---------- ---UGCC--- UUGAAUAG-U 3001 U-UAGCA-UG G-AAUAAU-A AAGU-AGGA- C--U-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UAGG UACC---AAA G-UAA-UGGU UAAUA-GGAA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCCU- A--AC-CA-U -AAACAAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----UGGAGG U----C---- -GU-C----- ---------- --AGUUUUUA 3721 C--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-UUCA-- ----GCA--- --------CC U-UGA----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A AA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UUUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GG U-----ACG- -----GG-A- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- -------AUA AGCUCUCGCU G-----UCC- 5521 --CGU----C --A--U-C-- G-----CU-U C-UU-AGAGG -GA---CUU- U-GCGGU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UAUAA-AUCG C-A-AGGAAG -UUUAAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCGU-U-C 5761 AU-CG-AG-U UUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 CC--GAGA-- GG-CC----C --GGG-UAAU --CU-U--UA -GU-AC-GC- AU-C-G-UG- 5941 AUG-GGGAU- CGA---UU-A U-UGCAAUU- G-UUAAUCG- UG-AA-C-GA GGA-AUGCC- 6001 U-AGUA-U-G C-GCA-AG-U CAUCAG--CU U-GUGC-A-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UC--GAGU-G A-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --CCG-U-GA UGUU------ ----CCC--- ---------- 6181 ---------- ---------- ---------- ----GACA-- --GG-G---- ---------- 6241 ---------- --------AA -CG--U-C-U A-GG---GAA G---UUUU-G UGAA-CCU-U 6301 A-U-CA-CUU AA-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plas.falcB 7872 bp RNA RNA 02-JUL-1998 DEFINITION Plasmodium falciparum (malaria parasite). REFERENCE 1 AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) COMMENT Corresponding GenBank entry: M19173|g160643 common_name= malaria parasite NB: 233n, 258n intentionally offset BASE COUNT 707 a 296 c 413 g 730 u 5726 others ORIGIN 1 .........A ACCUGGU-UG A--U-CU-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 CA-GAUUAA- -GCCAUGC-A AGU-GAAAGU ---------- -------ACA UAUGUAAGUA 121 AUA------- ----UAUUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-AA -ACAG-UUAU -AA-UCUAC- -UUGA-UG-- 241 UUUUUAAUA- ---------- ---------- --------UA -A-GG-AUAA C-U-ACGG-- 301 AA-AAU-CUG UAGCUAA-U- --ACUUGUGA AA-------- ---------- ---------- 361 --A-UACCUU UUGAUAUAUA CAU------- ---------- ---------- -----AUGU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -AUGUAUCAU 541 UAAGGU-AU- ---GUAU-UU -GUUA----- -------GAU A-UAA----- ---------- 601 ---------- ---------- ---------- ---------- -----GAAUA AAAUAAA--- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -UAUAA---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------UU G-AAUU---A --UA-ACAAA GAAGAAA--- -------CA- C----A---- 1021 -UA------- ---------A AA-------- ---------- ---------- ---------- 1081 ---------- ---------- ------UAU- -G-UGUAUUA -UCA-AUC-G AGUAU-CUGA 1141 --CCU-AUC- AG-CUUUUG- -AUGUUA-GG -GUAU-UGA- CCU----AAC A-UGGC-UA- 1201 UGA-CGGG-U -AACGGGGAA U-UAGAGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UAG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UUCU- ---AAAAA-- 1801 ---AGAGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AA---- 1861 -UAUCG---- -AAAAA---U GA-U-U---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUA----- 1981 ------G-GA AUUU-ACAAG GUUCC----- -------UAG A-GA-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 AUAU-AUU-- AAAAUUGU-U --GCAGUU-- ----AAAACG UUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUAU 2221 U-A--A-AG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---AAUCCGA -UGUU----- 2521 -------UCA UUUAAACUGG UUUGGGAAAA CCAAAUAUAU UAUA------ ---------- 2581 ---------- ---------- ---------- ----UAUUU- UG---CUUUG UU----CAAA 2641 AUA------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- -AGGUUUUCU -AAUAAAUUA UGUUUUUAUC 2761 AGAUAU--G- ACA------G AAU------- CU-UU----- ---------- UUU-AAAAUC 2821 --------U- -CU-UCA--- AUAUGCUUU- -U-------- -AUUGCUUUU GA--GAG-G- 2881 --------UU --UUGUUACU UUG-AGUAAA A-UUAAGU-G UUC-A-UA-A -C-AGAC--- 2941 G-GGUAG-UC AUGAUUGAGU UCAU------ ---------- ---UGUGU-- UUGAAUAC-U 3001 A-CAGCA-UG G-AAUAAC-A AAUA-UGAA- U--A-AGCU- -AAUUA---- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 UUUUUUUUUU CAUUAUUUUU UU--UGA--U AUUCUUA--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 --------UU AGCU----UA G-UUA-CGAU UAAUA-GGAG U-AGCU---- -------UUG 3421 GGGGCA-UU- CG--UA-U-U CAGA-U-G-U C-A-GAG-GU GAAA-UUC-U AAGAUUUU-C 3481 UG-G-AG-AC GGAC-UACUG C-GAAA--GC A---UUUG-C C-UAA----- ---UCUAUUU 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAAGG-GAG -UGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAAUCUU- A--AC-CA-U -AAACUAU-A -CCGACU-A- GG-UGUUGGA 3661 UGAAUAUAAA AAAUAUAUAA A----UAUG- -UA-GCAUUU C--------- --UUAG---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ----GGAAUG -UUG-AU-UU --U-AUAUUA GAAUUGCUUC CUUCAGUACC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGC -GAG-UAUUC 3961 G-C-GCAA-G CG-AGAA-AG UU-AAA---- --AGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CU -AGUUU---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G-AC-A AG-A-GUAGG AUU-G-ACA- 4621 GA--UUAAUA GC--UCUUU- CUUGAUU-U- CUUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GAUG-CAUG 5101 GCC-GU-UU- UUA--GUUCG -U-GAAUAUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGAUC-UU-A A-CCU-GCUA A-UUA-G-C- --GG--UAA- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 -------GUA CACUAUAUUU UUAUUUGAAA UUGAAUAUAG GUUACUAUAC GUUUAUUCAG 5401 UGUUCAAAUU AGGAUAU--U UUUUUUAUUA AAAUAUUCUU UUCCCUGUUU UACUAAUAAU 5461 UUGUUUUUUU UUACUCUAUU UCUCUCUUCU UUUAAGAAUG UACUUGCUUG A--------- 5521 --UUA-AAUA AA-----G-- ------CU-U C-UU-AGAGG -AA---CAG- U-GU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUCUA-AC-A C-A-AGGAAG -UUUAAGGC- AACAACAGG- UCUG-UG-AU 5701 GUCC-UU--- -AG-AUA-AA C-UAGG-CUG -CACGCGUGC UA-CAAU-GA -UAUAU-A-U 5761 AA-CA-AG-U UGUUAAAA-- ---------- -AU---GU-A CUUA--UAAA --UAAGU-GU 5821 -GU------- ------ACAA UUUUU----- ---------- --------CC -----UG-UA 5881 CU--GAAA-- AG-UA---UA --GG--UAAU --CUUUAUCA -GU-AU-AU- AU-C-G-UA- 5941 AUU-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-AUG-AU-U CAUUAG--AU U-GUGC-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAA-G A-UA-U-GA- 6121 UAAAUU-GUU -UGGA----- --UAU-G-AA UUAAA----- ---AUAA--- ---------- 6181 ---------- ---------- -----UGAAA UUUUAUAU-- --UU-CU--- ---------- 6241 ---------- -------GAU UUU--U-U-C U-AG---AAG A---ACUG-- UAAA-UCC-U 6301 A-U-CU-UUU AA-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA-~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plas.falcA 7872 bp RNA RNA 02-JUL-1998 DEFINITION Plasmodium falciparum (malaria parasite). REFERENCE 1 AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) COMMENT Corresponding GenBank entry: M19172|g160642 common_name= malaria parasite BASE COUNT 645 a 324 c 420 g 701 u 5782 others ORIGIN 1 .........A ACCUGGU-UG A--U-CU-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-GAAAGU ---------- -------AUA UAUAUAUUUU 121 AUA------- ----UGUAGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UCUAC- -UUGA-CA-- 241 UUUUUAUUA- ---------- ---------- --------UA -A-GG-AUAA C-U-ACGG-- 301 AA-AAG-CUG UAGCUAA-U- --ACUUGCUU UAU------- ---------- ---------- 361 --U-AUCC-- -----UUGA- ---------- ---------- ---------- -----UUUUU 421 A--------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----UCUUU 541 ---GGA-UA- --AGUAU-UU -GUUA-GGCC UU-AUAAGAA AA-------- ---------- 601 ---------- ---------- ---------- ---------- -----AAGUU AUU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -AACUU---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- --AAGGAAUU A-UA-ACAAA GAAGUAA--- -------CA- C-GU-A---- 1021 -AU----AAA ---------U UUAU------ ---------- ---------- ---------- 1081 ---------- ---------- ---UUUAUUU AG-UG-UGUA -UCA-AUC-G AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUUG- -AUGUUA-GG -GUAU-UGG- CCU----AAC A-UGGC-UA- 1201 UGA-CGGG-U -AACGGGGAA U-UAGAGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UAG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UUCU- ---AAAGA-- 1801 ---AGAGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -GC-AA---- 1861 -GGCCAA--- --UUU---UU GG-U-U---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGGUG----- 1981 ------G-GA AUUU-AAAAC CUUCC----- -------CAG A-GU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAAUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 C-A--A-AG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---AAUCGAU AUUUU----- 2521 -------AUU GUAACUAUUC UAGGGGAACU AUUUU----- ---------- ---------- 2581 ---------- ---------- ---------- -------AG- CU-----UUU ------GGCU 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------U UAAUACGCUU CCUCUAUUAU UAUGUUCUUU AAAUA----- ---------- 2761 --------AC AAA------G AUU------- CU-UU----- ---------- UU--AAAAU- 2821 --------C- -CC-CAC--- UUUUGCUUU- -U--G--C-- -----UUUUU UG--GGG-A- 2881 --------UU --UUGUUACU UUG-AGUAAA U-UAGAGU-G UUC-A-AA-G -C-AAAC--- 2941 A-GUUAA-AG CAUUU-AC-- ---------- ---------- ---UGUGU-- UUGAAUAC-U 3001 A-UAGCA-UG G-AAUAAC-A AAAU-UGAA- C--A-AGCU- -AAAAU---- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ----UUUUUG UU--CUU--U UUUCUUA--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UUUU GGCU----UA G-UUA-CGAU UAAUA-GGAG U-AGCU---- --------UG 3421 GGGACA-UU- CG--UA-U-U CAGA-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUU-C 3481 UG-G-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-U C-UAA----- ---AAUACUU 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAAGG-GAG -UGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAAUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GG-UGUUGGA 3661 ----UGA--- ----AAGUGU UAAAAAUAAA AGU-CAUCU- ---------- --UUCG---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ------AGGU -GACUUUUAG AUU-GCUU-- ----CC---- -UUCAGUACC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGC -GAG-UAUUC 3961 G-C-GCAA-G CG-AGAA-AG UU-AAA---- --AGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CU -AGUUU---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G-AC-A AG-A-GUAGG AUU-G-ACA- 4621 GA--UUAAUA GC--UCUUU- CUUGAUU-U- CUUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GAUG-CAUG 5101 GCC-GU-UU- UUA--GUUCG -U-GAAUAUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGAUC-UU-A A-CCU-GCUA A-UUA-G-C- --GG--CGA- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 -------GUA CACUAUAUUC UUAUUUGAAA UUGAACAUAG GUAACUAUAC AUUUAUUCAG 5401 UAAUCAAAUU AGGAUAU--- --UUUUAUUA AAAUAUCCUU UUCCCUGUUC UACUAAUAAA 5461 UUG---UUUU UUACUCUAUU UCUCUCUUCU UUUAAGAAUG UACUUGCUUG A--------- 5521 --UUG-AA-A A------G-- ------CU-U C-UU-AGAGG -AA---CAU- U-GU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-A C-A-AGGAAG -UUUAAGGC- AACAACAGG- UCUG-UG-AU 5701 GUCC-UU--- -AG-AUG-AA C-UAGG-CUG -CACGCGUGC UA-CACU-GA -UAUAU-A-U 5761 AA-CG-AG-U UUUUAAAAA- --UAUGC-UU -AUAU-UU-G UAUC--UUU- --GAUGC-UU 5821 -AUAU-UUU- GCAUA-CUUU U--------- ---------- --------CC -----UC-CG 5881 CC--GAAA-- GG-CG---UA --GG--UAAU --CUUUAUCA -AU-AU-AU- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-AUG-AU-U CAUCAG--AU U-GUGC-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAA-G A-UA-U-GA- 6121 UGAAUU-GUU -UGGA----- --CAA-G-AA AAAUU----- ---GAAU--- ---------- 6181 ---------- ---------- ---------- -----UAU-- --AU-UC--- ---------- 6241 ---------- -------UUU UUU--U-U-C U-GG---AAA A---ACCG-- UAAA-UCC-U 6301 A-U-CU-UUU AA-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA-~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Plas.malar 7872 bp RNA RNA 02-JUL-1998 DEFINITION Plasmodium malariae str. Uganda-I-CDC (apicomplexan). REFERENCE 1 AUTHORS Goman,M., Mons,B. and Scaife,J.G. TITLE The complete sequence of a Plasmodium malariae SSUrRNA gene and its comparison to other plasmodial SSUrRNA genes JOURNAL Mol. Biochem. Parasitol. 45, 281-288 (1991) COMMENT Corresponding GenBank entry: M54897|g160636 (bases 173 to 2319) common_name= apicomplexan isolate_name= Uganda-I-CDC BASE COUNT 683 a 309 c 432 g 723 u 5725 others ORIGIN 1 .........A ACCUGGU-UG A--U-CU-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A AGU-GAAAGU ---------- -------AUA UGCAUAUUUU 121 AUA------- ----UGUAGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UCUAC- -UUGA-CA-- 241 UUUUUUUUA- ---------- ---------- --------UA -A-GG-AUAA C-U-ACGG-- 301 AA-AAG-CUG UAGCUAA-U- --ACUUGCUU UAA------- ---------- ---------- 361 --U-ACUC-- -----UUAA- ---------- ---------- ---------- -----UUCUU 421 AUGUUU---- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----UUUU- 541 ---GAG-UA- --UGUAU-UU -GUUA-AGCC UU-AUAAGAG AA-------- ---------- 601 ---------- ---------- ---------- ---------- -----AAGU- AUAUUA---- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --ACUU---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---AAGGAUU A-UA-ACAAA GAAGUAA--- -------CA- C-AU-A---- 1021 -AU----A-- ---------A AUUUCGAA-- ---------- ---------- ---------- 1081 ---------- ---------- -----UAUUU AG-UG-UGUA -UCA-AUC-G AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUUG- -AUGUUA-GG -GUAU-UGG- CCU----AAC A-UGGC-UA- 1201 UGA-CGGG-U -AACGGGGAA U-UAGAGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UAG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UUCU- ---AAAGA-- 1801 ---AGAGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -GC-AA---- 1861 -GGCCAA--- --AUU---UU GG-U-U---- -U--UG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUG----- 1981 ------G-GA AUUU-AAAAC CUUCC----- -------CAG A-AG--GCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAAUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 2221 C-A--A-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---AAUCAAU AUUUUA---- 2521 -------AGU AAUGCUUUGU AUAUUUAUAA CAUAGUUGUA CGUU------ ---------- 2581 ---------- ---------- ---------- ----AAGAA- UAACCGCCAA GGCUUAUAUU 2641 UUU------- ---------- ---------- ---------- ---------- --------UC 2701 UGUUACAUUU UGUUUUAUUA AUAUAU-AUA UGCGUUCUUA ---UUA---- ---------- 2761 -------UAA AAAU-----G AUU------- CU-UU----- ---------- UU--AAAAUU 2821 ---------- ------C--- UUUUGUAUA- -A-----UU- -UUUUAUGCA UG--GGA-A- 2881 --------UU --UUGUUACU UUG-AGUAAA U-UAGAGU-G UUC-A-AA-G -C-AAAC--- 2941 A-GUUAA-AA CAGUUUC--- ---------- ---------- ---UGUGU-- UUGAAUAC-U 3001 A-CAGCA-UG G-AAUAAC-A AAAU-UGAA- C--A-AGUC- -AGAAG---- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ------UUUG UU--CUU--U UUUCUUA--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UUUU GGCU----UA G-UUA-CGAU UAAUA-GGAG U-AGCU---- --------UG 3421 GGGGCA-UU- UG--UA-U-U CAGA-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUU-C 3481 UG-G-AG-AC AAGC-AACUG C-GAAA--GC A---UAUG-C C-UAA----- ---AAUACUU 3541 C-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAAGG-GAG -UGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAAUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GG-UGUUGGA 3661 UGAUAGUGUA AAAA-AUAAA A--------- -GA-GACAUU C--------- --UUAUAUAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ----GAGUGU -UUC----UU --U-UAGA-- ---UAGCUUC CUUCAGUACC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGC -GAG-UAUUC 3961 G-C-GCAA-G CG-AGAA-AG UU-AAA---- --AGAA-CCG -ACGGAA-GG G-GA---CA- 4021 -C-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CU -AGUUU---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G-AC-A AG-A-GUAGG AUU-G-ACA- 4621 GA--UUAAUA GC--UCUUU- CUUGAUU-U- CUUG-GA-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GAUG-CAUG 5101 GCC-GU-UU- UUA--GUUCG -U-GAAUAUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGAUC-UU-A A-CCU-GCUA A-UUA-G-C- --G---GUA- ---------- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 -------AUA CACUAUAUUC UUAAGUGAAA UUAGAAUAUA GAUAAAUUGU GCUAAUUUUG 5401 AUUAAAAUAU UAGAAUGUUU UUUUUAAUAA AAACGUUCUU UUCCCUUUUU UUCUUAAUUA 5461 UGCAUA---U UUAUUCUUUU UCUUUUUUCG CAUAAGAAUG UAUUUGCUUA A--------- 5521 --UGU----A A------G-- ------CU-U C-UU-AGAGG -AA---CGA- U-GU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-A C-A-AGGAAG -UUUAAGGC- AACAACAGG- UCUG-UG-AU 5701 GUCC-UU--- -AG-AUG-AA C-UAGG-CUG -CACGCGUGC UA-CACU-GA -UAUGU-A-U 5761 AA-CG-AG-U AUUUAAAAAU AUAUAUCUUG UUAUGUUAUA CGUAUUUCUA UAUGUAUGCA 5821 UACAAAGAAU AUAUAGU--- ---------- ---------- --------UU ----GCU-CA 5881 CU--GAA--- AG-UG---UA --GG--UAAU --CUUUAUCA -AU-AU-AU- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-AUG-AU-U CAUCAG--AU U-GUGC-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAA-G A-UA-U-GA- 6121 UGAAUU-GUU -UGGA----- --CAA-G-AA AAAA------ -----GG--- ---------- 6181 ---------- ---------- ---------- -UUUUUAU-- --UC------ ---------- 6241 ---------- --------UU -UU--U-U-C U-GG---AAA A---AUCG-- UAAA-UCC-U 6301 A-U-CU-UUU AA-AGGA--- AGG-AGAAAG UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUC- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Eimi.niesc 7872 bp RNA RNA 02-JUL-1998 DEFINITION Eimeria nieschulzi (obligate intracellular parasite (coccidian)). REFERENCE 1 AUTHORS Relman,D.A., Schmidt,T.M., Gajadhar,A., Sogin,M., Cross,J., Yoder,K., Sethabutr,O. and Echeverria,P. TITLE Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species JOURNAL J. Infect. Dis. 173, 440-445 (1996) COMMENT Corresponding GenBank entry: U40263 common_name= obligate intracellular parasite (coccidian) BASE COUNT 457 a 362 c 472 g 505 u 6076 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--A 121 UA-------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUCACUUUUA ---------- ---------- --------CA -U-GG-AUAA C-C-AUGG-- 301 UA-AUU-CUA UGGCUAA-U- --ACAUGCGC AAU------- ---------- ---------- 361 --C-GCCU-- -----CCUU- ---------- ---------- ---------- -----CUCU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAG- 541 ---GGG-CU- ---GUGU-UU -AUUA-GAUA CAAA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ------CCAC UUUU------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GUGG----- 901 ---------- ---------- ---------- ---------- ---------- ---------A 961 GCC--U-GGG U---GAUUCA --UA-GUAAC CGAACGGA-- -------UC- G----CAGU- 1021 -UG----GC- ---------U UUG------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCCG- -C-GA-UAUA -UCU-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUCG- -ACGGUA-GG -GUAU-UGG- CCU----ACC G-UGGC-AG- 1201 UGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UGAA- ---AACAGC- 1801 ---UUCGA-G GUA-GUGAC- GAG------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCAU---- --UUU----U UG-U-U---- -C--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUG----- 1981 ------G-GA AUGU-AAAAC CCUUU----- -------CAG A-UU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-U 2101 GUAU-AUU-- AGAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-UC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GUGGU-- -CAUCC---- 2521 GGUUCCG--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- CC----GUAU ------GGG- 2641 ---------- --------UG UG-CG-CCU- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------GGU UUG-----CC CUC------- GG-CU----- ---------U UCU-UCCGUU 2821 AGCCUU---- -CG-GCG--- CUUCAUUGC- -G--U--C-- ---UGUUGGU GU--UUC-G- 2881 --------GA -ACUUUUACU UUG-AGAAAA A-UAGAGU-G UUU-C-AA-G -C-AGGC--- 2941 U-UGU----- ---------- ---------- ---------- ---CGCC--- CUGAAUAC-U 3001 U-CAGCA-UG G-AAUAAU-A AGAU-AGGA- C--C-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUGG GACU---AAG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGACA--G UAGGGG-GUU -UGAA-GACG --AUUA-G-A 3601 UAC-C-GU-- CGUAAUCUC- U--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----AGGGAA A----U---- -GC-C----- ---------- --UACCUU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----UU --C-UCCU-- ----GCA--- --------CC U-CAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUC-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- -U-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UG-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UCUGU-CU --GG-UUAAU U--UCGAU-A 5161 AC-GAA-C-G AGACC-UU-A G-CCU-GCUA A-AUA-G-GA U-U---CGG- -----GA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUC G----GUUU- 5521 --CCG----C --A--U-C-- --A---CU-U C-UU-AGAGG -GA---CUU- U-GCAGU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G CCA-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-G-C 5761 AA-CG-AG-U UUUA------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GGCA-- GG-UC---UA --GGU--AAU --CU-UUUGA -GU-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-GCA-AG-U CAGCAG--CU U-GCGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-G- C-A-ACCGA- UC--GGAG-G G-UC-C-UG- 6121 UGAAUU-CAU -CGGA----- --AAG-A-CC AUC------- -UUCGC---- ---------- 6181 ---------- ---------- ---------- ------UU-- ---G-CG--U U--------- 6241 ---------- ---------G -UU--G-G-U C-AA---GAA G---UUGC-G UAAA-UAG-A 6301 G-C-CC-UNU AA-AGGA--- UGC-AAAAG- UCGUAA--C- ACGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Srcy.fusif 7872 bp RNA RNA 02-JUL-1998 DEFINITION Sarcocystis fusiformis (coccidian apicomplexan). REFERENCE 1 AUTHORS Holmdahl,O.J.M., Mattsson,J.G., Uggla,A. and Johansson,K.-E. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on ribosomal rRNA sequences JOURNAL FEMS Microbiol. Lett. 119, 187-192 (1994) COMMENT Corresponding GenBank entry: U03071|g414294 dev_stage= cystozoite common_name= coccidian apicomplexan specific_host= Felis catus BASE COUNT 537 a 337 c 459 g 545 u 5994 others ORIGIN 1 .......... ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUUAUU 121 AUA------- ----CGGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 GUCAAUAUAA UACUA----- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA UGGCUAA-U- --ACAUGCGC AAA------- ---------- ---------- 361 --U-ACUA-- -------UAU C--------- ---------- ---------- -----ACUCG 421 GG-------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GGUA--- 541 ---UAG-UA- ---GUGU-UU -AUUA-GAUA CAGA------ --ACC---AA UA-------- 601 ---------- ---------- ---------- ---------- ---CACCUUU UUUA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -AAGGGUG-- 901 ---------- ---------- ---------- ---------- ---------- -----UAGAA 961 AAA-----GG U---GAUUCA --UA-GUAAC CGAACGGA-- -------UC- G----CAUUA 1021 -UA----AUC AU-------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- -AUGAUUGG- -C-GA-UAGA -UCA-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUCG- -ACGGUA-GU -GUAU-UGG- ACU----ACC G-UGGC-AG- 1201 UGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACU--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAC----- -AC-UG---- 1861 -GAAAU---- --UCU----A UU-U-C---- -U--AG-UGA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUG----- 1981 ------G-GA AUCC-AAACC CCUUU----- -------CAG A-GU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUAU 2221 C-U--G-CU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGAAG-- -CAAU----- 2521 CAG-U-C--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ----CGCCC- UU----UUAG U-----GAGG 2641 GUG------U GUACUUGAUG AAUUC-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ------GCAU GAUUAU--CU UCC-CACU-- AA-UA----- --AUAUUAUU AUA-UUAGGA 2821 UA--AUUCC- -UA-AUA--- UGGUAAUAA- -U--A--AU- -UUUGGUAAG AC--AAA-C- 2881 --------AG --UAGUUACU UUG-AGAAAA U-UACAGU-G UUU-G-AA-G -C-AGGC--- 2941 U-UGU----- ---------- ---------- ---------- ---UGCC--- UUGAAUAC-U 3001 G-CAGCA-UG G-AAUAAC-A AUAU-AGGA- U--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG GACU---GAA A-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAA----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----AGGAAA A----U---- -GU-CA---- ---------- --CUGU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UU --C-UCCU-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UG-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GA U-----CAA- -----GA-AC 5221 AC-------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --UUUUAUUA U--GUGUUU- 5521 --UUG----U --A--U-C-- A-----CU-U C-UU-AGAGG -GA---CUU- U-GC-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-C-C 5761 AA-CA-AG-U UGUUUAAG-- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAUA-- GG-UU---UA --GGU--AAU --CU-UUUGA -GU-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-GCA-AG-U CAGCAC--CU U-GCGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G U-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --CUG-U-UC CGUGU----- CACGUUG--- ---------- 6181 ---------- ---------- ---------- ----UGUA-- --CA-CAGC- -AAUG----- 6241 ---------- -----GUGUG -CG--G-A-A U-GG---AAA G---UUUU-G UGAA-CCU-U 6301 A-A-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Txpl.gondi 7872 bp RNA RNA 02-JUL-1998 DEFINITION Toxoplasma gondii str. RH (apicomplexan; virulent parasite). REFERENCE 1 AUTHORS Long,M., Ding,Y., Polin,D. and Luft,B.J. TITLE Structural characteristics of the Toxoplasma ribosome JOURNAL Unpublished (1993) COMMENT Corresponding GenBank entry: X68523|g288902 common_name= apicomplexan; virulent parasite isolate_name= RH BASE COUNT 472 a 363 c 463 g 504 u 6070 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--A 121 UA-------- ----CGGCUA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUCUUUACUA ---------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA UGGCUAA-U- --ACAUGCGC ACA------- ---------- ---------- 361 --U-GCCU-- -----CUUC- ---------- ---------- ---------- -----CCCU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ----GG-CA- ---GUGU-UU -AUUA-GAUA CAGA------ --ACC---AA C--------- 601 ---------- ---------- ---------- ---------- -----CCACC UUCC------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGUGG---- 901 ---------- ---------- ---------- ---------- ---------- -------UCC 961 UCA-----GG U---GAUUCA --UA-GUAAC CGAACGGA-- -------UC- G----CGUU- 1021 --G----AC- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- ----GUCUG- -C-GA-CGGA -UCA-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUCG- -ACGGUA-CU -GUAU-UGG- ACU----ACC G-UGGC-AG- 1201 UGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----AUU--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAC----- -AC-UG---- 1861 -GAAAU---- --UUC----A UU-U-C---- -U--AG-UGA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUA----- 1981 ------G-GA AUCC-AAACC CCUUU----- -------CAG A-GU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-CU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --GGAAG--- -GCCAG---- 2521 UCC-G----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- CC-----UCA ------GGG- 2641 ---------- ---------- GU--G-UGCA C--------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------UU GGU---GAAU UCU------- AG-CA----- ---------U CCU-UCUGG- 2821 ----AUUUC- -UC-CAC--- ACUUCAUUG- -U--G--UG- -GA--GUUUU UU--CCA-G- 2881 --------GA --CUUUUACU UUG-AGAAAA U-UAGAGU-G UUU-C-AA-G -C-AGGC--- 2941 U-UGU----- ---------- ---------- ---------- ---CGCC--- UUGAAUAC-U 3001 G-CAGCA-UG G-AAUAAU-A AGAU-AGGA- U--U-UCGG- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG GACU---GAA G-UAA-UGAU UAAUA-GGGA C-GGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAA---GC A---UUUG-C C-AAA----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----AGGAAA A----C---- -GU-CA---- ---------- --UGCU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UU --C-UCCU-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GA U-----CAG- -----GA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UUCG U----GUUC- 5521 --UUG----U --A--U-C-- A-----CU-U C-UU-AGAGG -GA---CUU- U-GC-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-C-C 5761 AA-CG-AG-U UUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAUA-- GG-UC---UA --GGU--AAU --CU-UGUGA -GU-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-GCA-AG-U CAGCAC--GU U-GCGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- AU--GAGU-G U-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --CCG-U-UU UGUG------ ---GCGC--- ---------- 6181 ---------- ---------- ---------- ----GUUC-- --GU-GC--- ---------- 6241 ---------- --------C- -CG--A-A-A U-GG---GAA G---UUUU-G UGAA-CCU-U 6301 A-A-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCCCGGG~~ ~~ // LOCUS Nspr.cani4 7872 bp RNA RNA 02-JUL-1998 DEFINITION Neospora caninum str. NC-Liv (parasitic apicomplexan). REFERENCE 1 AUTHORS Barber,J.S., Holmdahl,J.O.M., Owen,M.R., Guy,F.M. and Trees,A.J. TITLE Characterization of the first European isolate of Neospora caninum (Dubey, Carpenter, Speer, Topper and Uggla) JOURNAL Parasitology 111, 563-568 (1995) COMMENT Corresponding GenBank entry: U16159|g562132 (bases 1 to 1793) common_name= parasitic apicomplexan isolate_name= NC-Liv BASE COUNT 468 a 358 c 460 g 507 u 6079 others ORIGIN 1 .......... ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--A 121 UA-------- ----CGGCUA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUCUUUACUA ---------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA UGGCUAA-U- --ACAUGCGC ACA------- ---------- ---------- 361 --U-GCCU-- -----CUUC- ---------- ---------- ---------- -----CUCU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-CA- ---GUGU-UU -AUUA-GAUA CAGA------ --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ------CACC UUCC------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGUG----- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 CCU--C-GGG U---GAUUCA --UA-GUAAC CGAACGGA-- -------UC- G----CGUU- 1021 -UG----AC- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- ----GUCUG- -C-GA-CGGA -UCA-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUCG- -ACGGUA-CU -GUAU-UGG- ACU----ACC G-UGGC-AG- 1201 UGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----AUU--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAC----- -AC-UG---- 1861 -GAAAU---- --UUC----A UU-U-C---- -U--AG-UGA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAUA----- 1981 ------G-GA AUCC-AAACC CCUUU----- -------CAG A-GU-AACAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-CU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGAA-GC AGCCA----- 2521 GU-CC----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------GC- CC----UCAG ------GGGU 2641 ---------- ---------G UG-C--AC-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------UU GGU-GA--AU UCU------- AG-CA----- ---------- -----UCCUU 2821 CUGGAUUUC- -UU-CAC--- ACUUCAUUG- -U--G--UG- -GA--GUUUU UU--CCA-G- 2881 --------GA --CUUUUACU UUG-AGAAAA U-UAGAGU-G UUU-C-AA-G -C-AGGC--- 2941 U-UGU----- ---------- ---------- ---------- ---CGCC--- UUGAAUAC-U 3001 G-CAGCA-UG G-AAUAAU-A AGAU-AGGA- U--U-UCGG- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG GACU---GAA G-UAA-UGAU UAAUA-GGGA C-GGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAA----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----AGGAAA A----C---- -GU-CA---- ---------- --UGCU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UU --C-UCCU-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GA U-----CAG- -----GA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UUCG U----GUUC- 5521 --UUG----U --A--U-C-- --A---CU-U C-UU-AGAGG -GA---CUU- U-GC-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-C-C 5761 AA-CG-AG-U UUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAUA-- GG-UC---UA --GGU--AAU --CU-UGUGA -GU-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-G-G C-GCA-AG-U CAGCAG--CU U-GCGC-C-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G U-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --CCG-U-UU UGU------- --GGCGC--- ---------- 6181 ---------- ---------- ---------- ----GUUC-- --GU-GCC-- ---------- 6241 ---------- ---------- -CG--A-A-A U-GG---GAA G---UUUU-G UGAA-CCU-U 6301 A-A-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Crsp.parvm 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cryptosporidium parvum str. MD isolate (parasitic apicomplexan). REFERENCE 1 AUTHORS Cai,J., Collins,M.D., McDonald,V. and Thompson,D.E. TITLE PCR cloning and nucleotide sequence determination of the 18S rRNA genes and internal transcribed spacer 1 of the protozoan parasites Cryptosporidium parvum and Cryptosporidium muris JOURNAL Biochim. Biophys. Acta 1131, 317-320 (1992) COMMENT Corresponding GenBank entry: X64341|g7002 clone= pCPA931 dev_stage= oocyst common_name= parasitic apicomplexan isolate_name= MD isolate BASE COUNT 517 a 320 c 410 g 481 u 6144 others ORIGIN 1 .......... .......... .......... .......A-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCUUUU--A 121 UA-------- ----CGGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAC- -UUGA-UA-- 241 AUCAAAACUA ---------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGA AAA------- ---------- ---------- 361 --A-ACCC-- -----AACU- ---------- ---------- ---------- -----UUGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-UU- ---GUAU-UU -AUUA-GAUA AAGA------ --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- ---------- AGC------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGG U---GAUUCA --UA-AUAAC UUUACGGA-- -------UC- G----C---- 1021 -AU----C-- ---------U CU-------- ---------- ---------- ---------- 1081 ---------- ---------- -----GAUG- -C-GA-CAUA -UCA-UUC-C AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUAG- -ACGGUA-GG -GUAU-UGG- CCU----ACC G-UGGC-UA- 1201 UGA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGAGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCC----- --UAAC---- GG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------G-AA GUAU-AAACC CCUUU----- -------ACG A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUA-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GUA---- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------U- A---ACCUGU AA-----UA- 2641 ---------- ---------- U--------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- UACUAA---- GG-UA----- ----UAUAUA AUA-UAAUCA 2821 AC--AUCCU- ------U--- CCUAUUAUA- -U--U--U-- ---CUAAAUA UA--UAG-G- 2881 --------AA --ACUUUACU UUG-AGAAAA U-UAGAGU-G CUU-A-AA-G -C-AGGC--- 2941 A-AC------ ---------- ---------- ---------- ---UGCC--- UUGAAUAC-U 3001 C-CAGCA-UG G-AAUAAU-A AGCA-AGGA- C--U-UUUG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UU--UCU--U AUUGGUU--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG GACA---AAA G-UAA-UGGU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-A-G-C C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----UGGAGG U----U---- -GU------- ---------- --UCCUU--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --AC----UC --C-UUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-AGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUCA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GU A-----AUA- -----GA-AA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----UUUAU U----UUUCU 5521 A-UAU----- --U--A-U-- ------CU-U C-UU-AGAGG -GA---CUU- U-GC-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G C-G-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-C-C 5761 AA-CG-AG-U AUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UG-CU 5881 UC--GAAG-- GA-AG----U --GGG-UAAU --CU-UAUGA -GU-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGUAAUU- A-UUGAUCU- UU-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G A-UC-C-GG- 6121 UGAAUA-AUU -CGGA----- --CCA-U-GC UACG------ ---AGUA--- ---------- 6181 ---------- ---------- ---------- ---GCAAA-- --UA-CA--- ---------- 6241 ---------- ---------- -UA--G-C-A A-GG---AAA G---UUUC-G UAAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGCAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Sybd.micro 7872 bp RNA RNA 02-JUL-1998 DEFINITION Symbiodinium microadriaticum (symbiotic dinoflagellate). REFERENCE 1 AUTHORS Rowan,R. and Powers,D.A. TITLE Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae) JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3639-3643 (1992) COMMENT Corresponding GenBank entry: M88521|g176088 geog_source= Jamaica biol_source= jellyfish Cassiopeia xamachana common_name= symbiotic dinoflagellate BASE COUNT 475 a 353 c 465 g 497 u 6082 others ORIGIN 1 .......... ....GGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------AUA AGCUUUUACA 121 ---------- ----CGGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -GCAG-UUAU -AA-UUUAU- -UUGA-UG-- 241 GUCACUGCUA ---------- ---------- --------CA -U-GG-AUAA C-U-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAC CAA------- ---------- ---------- 361 --A-ACCC-- -----AACU- ---------- ---------- ---------- -----UCGC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----AGAA- 541 ---GGG-UU- ---GUAU-UU -AUUA-GAUA CAGA------ --ACCAA-CG ---------- 601 ---------- ---------- ---------- ---------- -----CAGGC UCC------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCUG---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 GUU--G-UGG U---GAUUCA --UG-AUAAC UCGAUGAA-- -------UC- G----UG--- 1021 -UG----GC- ---------U UG-------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGA- -C-GA-UGCA -UCU-UUC-A AGUUU-CUGA 1141 --CCU-AUC- AG-CUUCCG- -ACGGUA-GG -GUAU-GGG- CCU----ACC G-UGGC-AA- 1201 UGA-CGGG-U -AACGGAGAA U-UAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCA----- --UCCA---- UG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-GA AUUU-AAACC CCUUU----- -------AUG A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GAGG-A- -UGAC----- 2521 CGG-U-C--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CU-----UCU ------GGGU 2641 G--------- --------UG CA-UC-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------GC UCA----G-C CUU------- GA-CA----- -------UCU UCC-UAAAGA 2821 AC--GUAUC- -UG-CAC--- -UUCAUU--- -GU-G--UG- ---GUGCGGU AU--UUA-G- 2881 --------GA --CAUUUACC UUG-AGGAAA U-UAGAGU-G UUU-C-AA-G -C-AAGC--- 2941 G-AU------ ---------- ---------- ---------- ---UGCC--- UUGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AGAU-AGGA- C--C-UCAG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG AGCU---GAG G-UAA-UGGU CGAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUG-U 3481 UA-A-AG-AC GGAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUU- A--AC-CA-U -AAACUAU-G -CCAACU-A- GAG------- 3661 -----AU--- ----UGGAGG U----C---- -GU-U----- ---------- --ACUUAUAC 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-UUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UU A-----CAU- -----GU-AA 5221 C--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUC G---GUUAC- 5521 --AUG----G --G-CA-A-- ------CU-U C-UU-AGAGG -GA---CUU- U-GU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-AC-G C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCGC-U-C 5761 AA-CG-AG-U UUGCA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------AUC -----UU-GC 5881 CU--GAAA-- UG-GC---CG --GGU--AAU --CU-UUUUA -AA-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GUGC-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G A-UC-C-GG- 6121 UGAAUU-AUU -CGGA----- --CUG-A-CG CAGUG----- --CUCAG--- ---------- 6181 ---------- ---------- ---------- -----CUU-- --CU-GG--- ---------- 6241 ---------- ------ACGU -UG--C-G-U U-GG---AAA G---UUUC-A UGAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Alxn.tamar 7872 bp RNA RNA 02-JUL-1998 DEFINITION Alexandrium tamarense (marine dinoflagellate). REFERENCE 1 AUTHORS Destombe,C., Cembella,A.D., Murphy,C.A. and Ragan,M.A. TITLE Nucleotide sequence of the 18S ribosomal RNA genes from the marine dinoflagellate Alexandrium tamarense (Gonyaulacales, Dinophyta) JOURNAL Phycologia 31, 121-124 (1992) COMMENT Corresponding GenBank entry: X54946|g16127 common_name= marine dinoflagellate BASE COUNT 498 a 316 c 454 g 532 u 6072 others ORIGIN 1 ........CA ACCUGGU--G A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUCAGU ---------- -------AUA AGCUUUCAUU 121 ---------- ----UUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC AAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AA-UGUAU- -UUGA-CA-- 241 AUCAACUCUA ---------- ---------- --------UA -U-GG-AUAU C-U-GUGG-- 301 AA-AUU-CUA UAGUUAA-U- --ACAUGCAU UGA------- ---------- ---------- 361 --A-ACCG-- -----AUCU- ---------- ---------- ---------- -----UUGG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---AGG-UU- ---GUGG-UC -GUUA-GUUA CAGA------ --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ---UUCAAGC AUU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCUUGAA-- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UAC--U-UGA U--UGAUUCA --UA-AUGAC AAAAUGAA-- -------UU- A----CA--- 1021 -UG----GC- ---------A ACA------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -U-AA-UAAU -UCA-UUC-C AGUUU-CUGA 1141 --CCU-AUC- AG-CUUUCG- -ACGGUA-AG -GUAU-UGG- CUU----ACC G-UGGC-AA- 1201 UGA-CAGG-U -GACGGAGGA U-UAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-UUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----GCA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AA---- 1861 -GGCA----- --UCCA---- UG-U-C---- -U--UG-UAC -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAAU----- 1981 ------G-GA UUUU-AAACC UUUCU----- -------GUA A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCGGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-CU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -G-AGGA--- -UGGC----- 2521 UGGUCC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- -----GCCCU CU-------- 2641 ---------- -----GGGUG AG-UA-UUUG ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------GC ACA------G CCUG------ AG-CA----- -------UUU AUC-UUGAAA 2821 GC--ACAAC- -UG-CAC--- -UUGACU--- -GU-G--UG- ---GUGUGUU AU--UGG-G- 2881 --------AA --CGUUUACU UUG-AGGAAA U-CAGAGU-G UUU-C-AA-G -C-AGGU--- 2941 G-UUU----- ---------- ---------- ---------- ---GGCC--- UUGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AU-C-AAGA- U--C-GUGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC GU--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUAG AAUU---GAG G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UGAU-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUG-U 3481 UA-A-AG-AC GGAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAAGG-GAC -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUU- A--AC-CA-U -AAACCAU-G -CCAACU-A- GAG------- 3661 -----AU--- ----UGAAGG U----U---- -GU-UA---- ---------- --CUUGUA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UU --U-UUCA-- ----GCA--- --------CC C-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U GUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-A-UGAGG AUU-G-ACG- 4621 GA--UUGAUA GC--UUUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-UU A-----CAU- -----GU-AA 5221 U--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC G---AUUAU- 5521 --GUG----- --GGCA-G-- ------CU-U C-UU-AGAGG -GA---CUU- U-GU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCAUA-AU-G C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGUGU-U-C 5761 AA-CG-AG-U UUUCA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GC 5881 CU--GGAA-- AG-GU---UU --GGU--AAU --CU-U--GA -AC-AG-GC- AU-C-G-UG- 5941 AUG-GGGAU- UGU---UU-A U-UGCAAUU- A-UUAACCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-UUG-AG-U CAUCAG--CU U-GUGC-U-G -AUUAUGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G A-UC-C-GG- 6121 UGAAUA-AUU -UGGA----- --CUG-U-AG CAA----UG- --UUCAG--- ---------- 6181 ---------- ---------- ---------- -----UUC-- --UU-GAAC- ----A----- 6241 ---------- ---------- ACG--C-A-A U-GG---AAA G---U-UUAA UGAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Blph.ameri 7872 bp RNA RNA 02-JUL-1998 DEFINITION Blepharisma americanum (heterotrich ciliate). REFERENCE 1 AUTHORS Greenwood,S.J., Schlegel,M., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships of Blepharisma americanum and Colpoda inflata within the phylum ciliiophora inferred from complete small subunit rRNA gene sequence JOURNAL J. Protozool. 38, 1-6 (1991) COMMENT Corresponding GenBank entry: M97909|g155945 common_name= heterotrich ciliate BASE COUNT 467 a 352 c 460 g 447 u 6146 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUU--A 121 UA-------- ----CGGCGA G--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGC-UA-- 241 GACGUUUA-- ---------- ---------- --------UA -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG GUU------- ---------- ---------- 361 ----ACGC-- ---------- ---------- ---------- ---------- -----UGU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---GCG-UA- ---GUAU-UU -AUUA-GAUA AAA------- --CCCAA-CG ---------- 601 ---------- ---------- ---------- ---------- -------GGG GCGA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCC------ 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -UG--U-GGA G---GAAUCA --UA-AUAAC UUAGCGAA-- -------CU- ---------- 1021 ---------- ---------C GACGU----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---AG-UGAA -GCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUCG- -AUGGUA-GU -GUAU-UGG- ACU----ACC A-UGGC-GA- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCU- ---AACUC-- 1801 ---AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAC----- -GC-GG---- 1861 -GGC------ --UUU----- -G-U-C---- -U--UG-CGA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------U-AA GUGU-AAAAG CCUUU----- --------CG A-GG-ACCCA CUGGAG-GG- 2041 -CAA-G-U-C -U-GU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAGU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAGCU 2221 C-U--G-CG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGGC--- -GGGU---CG 2521 CUGGGCC--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ------UCGG ---------- 2641 ---------- ---------U CU-GG-U--G ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------A- CCU------U CCU------- CG-CA----- ----UCCAUC UGA-GCAA-- 2821 ----CGGCU- -CC-GGC--- AUUAACUUG- -U--C--GC- -UGU-CGUG- AU--C-A-G- 2881 --------GU --ACUUUACC UUG-AGCAAA U-GAGAGU-G UUC-C-AG-G -C-AGGC--- 2941 U-UG------ ---------- ---------- ---------- ---GGC---- CUGAAUCG-U 3001 C-CAGCA-UG G-AAUAAU-A GAAG-AGGA- C--U-GGGC- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C -C--AUU--U AUUGGUGU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UAUG GCGC---UUA G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- UG--UA-U-U UAAU-U-G-U C-A-GAG-GU GAAA-UUC-U AUGAUUUA-U 3481 UA-A-AG-AC AAAC-UUAUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAAGG-GAU -CAAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GAG------- 3661 -----AU--- ----UGGAGG -----U---- -G-------- ---------- --CCAUUAAA 3721 AGUA------ ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---C----UC --C-UUCA-- ----GCA--- -------UCU U--CC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G AC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --G--G-C-- AUGGCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UG-G-GAAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGAU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-CUA-G-UC G-U---CUC- -----UU--- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCC A------AA- 5521 --GAG----U --C-GG-A-- ------CU-U C-UU-AGAGG -GA---CUU- U-GG-GG--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- -GCUA-CU-C C-A-AGGAAG -UUUAAGGC- AAUAACAGG- UCUG-UG-AN 5701 GCCC-UU--- -AG-ANG--C C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAG-G-C 5761 AG-UA-AG-C CCU------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----GC-GG 5881 CA--GAAAA- UG-CC---CC --GG--UAAC --CU-U--CA -AA-CU-GC- AU-C-G-UG- 5941 AUG-GGGAU- UGA---CU-C U-UGGAAUU- A-UUGGUCA- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCA-AG-U CAUCAA--CU U-GCAU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UUUCGAGU-G A-UG-A-GG- 6121 UGAAUC-CUC -CGGA----- --CUG-C-AC AC-------- ---------- ---------- 6181 ---------- ---------- ---------- -----CUC-- ---------- ---------- 6241 ---------- ---------- -GU--G-U-G U-GG---GAA G---UUGA-G UAAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Oxyt.nova1 7872 bp RNA RNA 02-JUL-1998 DEFINITION Oxytricha nova (hypotrichous ciliate). REFERENCE 1 AUTHORS Elwood,H.J., Olsen,G.J. and Sogin,M.L. TITLE The Small-Subunit Ribosomal RNA Gene Sequences from the Hypotrichous Ciliates Oxytricha nova and Stylonychia pustulata JOURNAL Mol. Biol. Evol. 2, 399-410 (1985) COMMENT Corresponding GenBank entry: M14601|g159822 common_name= hypotrichous ciliate BASE COUNT 480 a 348 c 448 g 495 u 6101 others ORIGIN 1 ~~~~~~~~~A AUCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GACUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGUGUU---A 121 UA-------- ----CAGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 AUCAAAUUUA ---------- ---------- --------CA -U-GG-AUAA C-C-GUGG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCUG UUA------- ---------- ---------- 361 --A-GCCU-- -----GACU- ---------- ---------- ---------- -----UUUA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-CU- ---GUAU-UU -AUUA-GAUA ACAA------ --AUCAA--- ---------- 601 ---------- ---------- ---------- ---------- --------UA UUCCUCGUGU 661 C--------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -UA------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGU G-AUGAUUCA --UA-AUAAC UGAUCGAA-- -------UC- G----CAU-- 1021 -GG----GC- ---------U UU-------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUCG- -C-GA-UACA -UCA-UUC-A AGUUU-CUGC 1141 --CCC-AUC- AG-CUUUCG- -AUGGUA-GU -GUAU-UGG- ACU----ACC A-UGGC-UU- 1201 UCA-CGGG-U -AACGGAGGA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-UAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACU--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CGGA----- -CC-GA---- 1861 -AGC------ --CUAU---- -G-U-U---- -U--CG-GGA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------CAA UGAGU----- 1981 ------A-GA AUUU-AAACC CCUUU----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---AGAG--- -CGCC---AA 2521 UGUC------ ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------G- UC----UUGU U-----GAC- 2641 ---------- ---------U GU-GC-AGC- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- GCG------C UCU------- UC-CA----- ----UCCUUC UGU-UAAC-- 2821 ----GUUUC- -G--GGU--- AUUCAUUUA- -C--U--CG- -UCU-CGGG- CU--C-A-G- 2881 --------AU --AUUUUACC UUG-AGAAAA U-UAGAGU-G UUC-C-AG-G -C-AGGC--- 2941 U-CG------ ---------- ---------- ---------- ---CGC---- CGGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C--U-UUAG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UC--CUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------GAGG GACU---GAA G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- AG--UA-U-U UAAU-U-G-U C-A-GAG-GU GAAA-UUC-U CGGAUUUG-U 3481 UA-A-AG-AC UAAC-UUAUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CAAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGAGG C--------- -GC-G----- ---------- --CUUUA--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -UCC----GC --C-UUCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- UU-GCGG-C- UC-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A G-CCU-ACUA A-CUA-G-UC G-----AUU- -----CG-UU 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GCU A----AGCG- 5521 --AA----CC --C--G-A-- ------CU-U C-UU-AGAGG -GA---CUU- U-GU-G---- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- ACUAA-AC-A C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGUGC UA-CACU-GA -CGCAU-A-C 5761 AG-CG-AG-U ACUUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----AG-CU 5881 CC--GAGA-- GGCAG---CU --GG--UAAU --C---AGCA -AU-AU-GC- GU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-U U-UGGAAUU- A-UAGAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUUAC--CU U-GCGC-U-G -AUUAAGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UUUCGAGU-G A-UC-C-GG- 6121 UGAACC-AUU -UGGA----- --CCG-C-GG AAGU------ ---------- ---------- 6181 ---------- ---------- ---------- ---CUCGU-- ---------- ---------- 6241 ---------- --------AU -UU--C-U-G U-GG---AAA A--UCUAG-- UAAA-CCA-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Tetr.pyrif 7872 bp RNA RNA 02-JUL-1998 DEFINITION Tetrahymena pyriformis str. GL-c (hymenostomate ciliate). REFERENCE 1 AUTHORS Sogin,M.L., Ingold,A., Karlok,M., Nielsen,H. and Engberg,J. TITLE Phylogenetic evidence for the acquisition of ribosomal RNA introns subsequent to the divergence of some of the major Tetrahymena groups JOURNAL EMBO J. 5, 3625-3630 (1986) COMMENT Corresponding GenBank entry: M98021|g161823 common_name= hymenostomate ciliate isolate_name= GL-c BASE COUNT 518 a 316 c 436 g 482 u 6120 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UU-A --CAUAUGCU -UGU-CUU-A 61 AA-UAUUAA- -CCCAUGC-A UGU-GCCAGU ---------- -------UCA GUAUUGAA-- 121 ---------- ----CAGCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -ACAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 AUUAAAGAUU A--------- ---------- --------CA -U-GG-AUAA C-C-GAGC-- 301 UA-AUU-GUU GGGCUAA-U- --ACAUGCUU AAA------- ---------- ---------- 361 --A-UUCC-- -----GUGUC ---------- ---------- ---------- -----CUGU- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----GACC-- 541 ---GGA-AC- ---GUAU-UU -AUUA-GAUA UUAG------ --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- -----UCGCA GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -UGUGA---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGA G-AUGAAUCA --AA-GUAAC UGAUCGAA-- -------UC- G----A---- 1021 -AG------- ---------C UUG------- ---------- ---------- ---------- 1081 ---------- ---------- ------CUU- -C-GA-UAAA -UCA-UCU-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUCUCG- -AUGGUA-GU -GUAU-UGG- ACU----ACC A-UGGC-AG- 1201 UCA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAAGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACUACA- 1741 AC-UACGGUU CGGCA-GCA- GGG-AA--GA A-AAUU-GGC C-AA-UCCU- ---AAUUC-- 1801 ---AGGGA-G CCA-GUGAC- AAG------- ----AAAUAG -CAAG----- -CU-GG---- 1861 -GAAAC---- --UUA----G UU-U-C---- -U-ACG-GCA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------AAA UGAGA----- 1981 ------A-AA GUGU-AAAUC UCUUA----- -------GCG A-GG-AACAA UUGGAG-GG- 2041 -CAA-G-U-C AUGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACUU 2221 C-U--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CAGG--- -UUCA----U 2521 UUCGA----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ------CUCG ---------- 2641 ---------- ---------- -U-CG-A--- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------GU- GAA------A CUG------- GA-CA----- ----UACGUU UGC-AAAC-- 2821 ----UAAAA- -UC-GGC--- CUUCACUGG- -UU-C--GA- -CUU-AGGG- AG--U-A-A- 2881 --------AC --AUUUUACU GUG-AAAAAA U-UAGAGU-G UUC-C-AG-G -C-AGGU--- 2941 U-UU------ ---------- ---------- ---------- ---AGC---- CCGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-G GAAU-AGGA- C----UAAG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C CA--UUU--U AUUGGUUC-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UUG GAUU----UG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- AG--UA-U-U UAAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 UA-A-GG-AC UAAC-UAAUG C-GAAA--GC A---UUUG-C C-AAA----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CAAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-UA-U -AAACUAU-A -CCGACU-C- GGG------- 3661 -----AU--- ----CGGCUG G----A---- -AU------- ---------- --AAAU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- --GU----CC --A-GUCG-- ----GCA--- --------CC G-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -AAG-UAUGG 3961 UAC-GCAA-G UC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-CA G-CA---CA- 4021 CC-A-GAAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUCA-CG -AGCGC---- ---------- ---------- 4561 ---------- ---------- ---------- -AA-G-AC-A GA-G-AAGGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UUUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-CUA-G-U- --CU--GCU- -----UG-U- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------GAAC A-----ACA- 5521 --GGU----U G----U-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-UGUGC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AAGAA-GC-C A-A-UGGAAG -UUUAAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-CU--- -AG-ACG-UG C-UCGG-CCG -CACGCGCGU UA-CAAU-GA -CUGGC-G-C 5761 AG-AA-AG-U AUUU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UG-UC 5881 CU--GGGA-- AG-GUA--CG --GG--UAAU --CU-UAUUA -AU-AC-CA- GU-C-G-UG- 5941 UUA-GGGAU- AGU---UC-U U-UGGAAUU- G-UGGAUCU- UG-AA-C-GA GGA-AUUUC- 6001 U-AGUA-A-G U-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUAUGU-C CC-UGCCGUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-U- G-U-AGUAA- C---GAAU-G G-UC-U-GG- 6121 UGAACC-UUC -UGGA----- --CUG-C-GG UA-------- ---------- ---------- 6181 ---------- ---------- ---------- ----GCAA-- ---------- ---------- 6241 ---------- ---------- -UA--C-U-G C-GG---GAA A--AUAAG-- UAAA-CCC-U 6301 A-C-CA-UUU GG-AACA--- ACA-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -AUCU-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAUG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Ppht.megas 7872 bp RNA RNA 02-JUL-1998 DEFINITION Phytophthora megasperma str. P3114 (potato pink rot fungus; oomycete). REFERENCE 1 AUTHORS Forster,H., Coffey,M.D., Elwood,H. and Sogin,M.L. TITLE Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution JOURNAL Mycologia 82, 306-312 (1990) COMMENT Corresponding GenBank entry: M54938|g169307 common_name= potato pink rot fungus; oomycete isolate_name= P3114 BASE COUNT 476 a 346 c 479 g 526 u 6045 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUACGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACACUUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-UA -UCAG-UUAU -AG-UCUAC- -UCGA-UA-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAC C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAU AAA------- ---------- ---------- 361 --U-ACCC-- -----AACUG ---------- ---------- ---------- -----CUUGU 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ----CGGGC- 541 ---GGG-UA- ---GCAU-UU -AUUA-GAUU GAA------- --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- -----CAGUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGCUG---- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 AUU--G-UGU U---GAGUCA --UA-AUAAC UGUGCGGA-- -------UC- G----C---- 1021 -GC------- ---------U UUU------- ---------- ---------- ---------- 1081 ---------- ---------- ------GCG- -C-GA-UAAA -UCG-AUU-G AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -AUAU-GGG- CCU----ACC A-UGGC-AU- 1201 UAA-CGGG-U -AACGGGGAA U-UAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-CUU---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-UC---- 1861 UGGCUC---- --UUC----G AG-U-C---- -G--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-UU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUGG--- -AUGU----- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ----CGCUC- CC-----UCU ------GGGA 2641 GUG------- --------CG UA-CU-UA-- -UGG------ ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------A- UGU------U CGA------- GG-CA----- ----UUUUUU GUG-AGGC-- 2821 UG--CCUUU- -CU-GCC--- AUUAAGUUG- -G--U--GG- -GUU-GGUGG GC--UUG-C- 2881 --------AU --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUU-A-AA-G -C-AGGC--- 2941 G-UU------ ---------- ---------- ---------- ---UGCUCAU UUGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A AGAU-ACGG- C--C-UUGG- -UG------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------GUC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCA CACC---AGG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGUA-UU- CA--UA-U-U UCAG-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUCGC-U 3481 GA-A-AG-AU GAGC-UUAGG C-GAAA--GC A---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-C- GGG------- 3661 -----AU--- ----UGGCAG U----C---- -GU-U----- ---------- --UACUUUAA 3721 AU-------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CU --U-GUCA-- ----GCA--- --------CC G-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-C G-CGU-GCUA A-AUA-G-UC C-C---GCU- -----UA-CC 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U---UGGUA- 5521 --GGU-UUGU --G--G-A-- ------CU-U C-UU-AGAGG -GA---CUU- U-UG-GGU-- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------A AUCAA-AC-C A-A-AGGAAG -UUGGAGGC- AAUAAC-GG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCGU-U-C 5761 AA-CG-AG-U AUACA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GA 5881 UC--GAUA-- GG-UC---UG --GGU--AAU --CU-UGUGA -AU-GC-GC- AU-C-G-UG- 5941 CUA-GGGAU- AGA---CU-G U-UGCAAUU- U-UCAGUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCA-AG-U CAUCAG--CU U-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G A-CU-C-GG- 6121 UGAAAA-AUU -GGGA----- --UCG-U-GA GUCCG--UU- ----UGC--- ---------- 6181 ---------- ---------- ---------- --UUCAUU-- --GC-G--A- ----G----- 6241 ---------- -------UGG -AU--U-G-A U-GA---GAA C---UUUU-U UAAA-CCU-C 6301 G-C-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Sklt.costa 7872 bp RNA RNA 02-JUL-1998 DEFINITION Skeletonema costatum (centric diatom). REFERENCE 1 AUTHORS Medlin,L.K., Kooistra,W.H.C.F., Gersonde,R. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta). II. Nuclear-encoded small-subunit rRNA sequence comparisons confirm a paraphyletic origin for the centric diatoms JOURNAL Mol. Biol. Evol. 13, 67-75 (1996) COMMENT Corresponding GenBank entry: X85395 common_name= centric diatom BASE COUNT 490 a 344 c 458 g 506 u 6074 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUACGCU -CGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AGAUACUU-- 121 ---------- ----UAUCGA A--------- ---------- ---------- ---------A 181 C-U-----GC GGA-CGGC-U -C-AUUA-UA -UCAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 AUCCCUCACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --AUAUGCAU CAA------- ---------- ---------- 361 --A-GCGG-- -----AACU- ---------- ---------- ---------- -----CUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---CCG-CC- ---GUGU-UU -AUUA-GUAU UAA------- --ACCUU-C- ---------- 601 ---------- ---------- ---------- ---------- ------ACUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GAGU----- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 GAU--U-UGG U---GAGUCA --UA-AUAAC CUUUCGAA-- -------UU- G----CA--- 1021 -UG----CA- ---------C AUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----UGCGG- -C-AA-UGGA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUGGG- -AUGGUA-GU -GUAU-UGG- ACU----ACC A-UGGC-UU- 1201 UAA-CGGG-U -AACGAAUUG U-UAGGGCAA -GAUU-UCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-CG---- 1861 -GGCCU---- --UUAC---A GG-U-C---- -U--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------UCG A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-U--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --AGGAG--- -UGGC----- 2521 CGGC------ ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ----CACAC- AC-----ACU ------GUGU 2641 GUG------- ---------- A--GU-UG-- ----U----- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- UCA------U UCUG------ GC-CA----- ----UCCUUG GUG-AGAU-- 2821 ----CCUGU- -UU-GGC--- AUUAAGUUG- -U--C--GG- -GCA-GGGGA -U--AAC-C- 2881 --------AU --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUU-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCCG-- UUGAAUAU-A 3001 U-UAGCA-UG G-AAUAAU-A AGAU-AGGA- C--U-UUGA- -GU------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCG AGUC---AAA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUC-U 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-C- AGG------- 3661 -----AU--- ----UGGCGG U----U---- -GU-U----- ---------- --UUUU---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUCA-- ----GCA--- --------CU G-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GU--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-GC-C G-CCU-GCUA A-AUA-G-AC C-----CGC- ---G-AA-UA 5221 G--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUU U---UUAUU- 5521 G-GCG----A --G--G-U-- ------CU-U C-UU-AGAGG -GA---CGU- U-CA-UU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------C UACAA-GA-U G-A-AGGAAG -AUGGCGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGU UA-CACU-GA -UGCAC-U-C 5761 AA-CG-AG-C AUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GG 5881 CC--GAGA-- GG-CC---UG --GGU--AAU --CU-UGUUA -AC-UU-GC- AU-C-G-UG- 5941 AUA-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-U C-GCA-GU-U CAUCAA--AC U-GCAA-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAGGA-GUC -GAGA----- --UUG-U-GG AUUAG----- ---CUCC--- ---------- 6181 ---------- ---------- ---------- --UUUAUU-- --GG-GG--- ---------- 6241 ---------- -------CUU -AU--C-C-G C-GA---GAA C---CUCU-C CAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Thal.nitzs 7872 bp RNA RNA 02-JUL-1998 DEFINITION Thalassionema nitzschioides CCMP 1084/1 (araphid, pennate diatom). REFERENCE 1 AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) COMMENT Corresponding GenBank entry: X77702|g456372 common_name= araphid, pennate diatom BASE COUNT 472 a 338 c 468 g 504 u 6090 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUACGCU -CGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AAUCUCUUA- 121 ---------- ----CCUUUA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-UA -UCAG-UUAU -AA-UUUAU- -UUGA-UA-- 241 GUCCCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU C--------- ---------- ---------- 361 ----ACC--- ---------- ---------- ---------- ---------- -----UUUG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ----GG-UG- ---GUAU-UU -AUUA-GAAA GAA------- --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- -------UCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGA------ 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 GAU--G-UGG U---GAAUCA --UA-AUAAG UUUGCGAA-- -------CU- C----GA--- 1021 -CG----GC- ---------U UUGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -GUAU-UGG- CCU----ACC A-UGGC-UU- 1201 UAA-CGGG-U -AACGGGAAA U-UAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-CG---- 1861 -GGCCU---- --UUGU---A GG-U-C---- -U--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAACC CCUUA----- -------UCG A-GG-ACCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCG--UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 G-U--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUUC--- --GCG---GU 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ----GCACUA AU-------- 2641 ---------- --------UG UG-UG-UA-- -CAU-GAGU- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GU-------G AG-------- UC-CA----- ----UCCUUG GGU-GGAA-- 2821 ----UCUGU- -GU-GGC--- AUUAGGUUG- -U--C--GU- -GCA-GGGGA -U--GCC-C- 2881 --------AU --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCCG-- UUGAAUAU-A 3001 U-UAGCA-UG G-AAUAAU-A AGAU-AGGA- C--C-UUGG- -UA------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCG CACC---GAG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U CCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUU-U 3481 GG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACA-A- GGG------- 3661 -----AU--- ----UGGCGG U----C---- -GU-U----- ---------- --GUAUU--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --C-GUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- AC---AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-CC-U G-CCU-GCUA A-AUA-G-UU U-U---GCU- -----AA-UG 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U---UCAUU- 5521 --GGU--AUC --GU-A-A-- ------CU-U C-UU-AGAGG -GA---CGU- G-CG-UU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------C UAUUA-GA-C G-C-AGGAAG -AUAGGGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-G-C 5761 AA-CG-AG-U GUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UU-GG 5881 CC--GAGA-- GG-CC---UG --GG--AAAU --C--UGUGA -AC-GU-GC- AU-C-G-UG- 5941 AUA-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCA-GA-U CAUCAG--UC U-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGC-CUC -GGGA----- --UUG-U-GA UGAG---UU- ----UCC--- ---------- 6181 ---------- ---------- ---------- --UUUAUU-- --GG-G--G- ----A----- 6241 ---------- --------UU -UG--U-C-G C-GA---GAA C---UUGU-C UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Cylt.clost 7872 bp RNA RNA 02-JUL-1998 DEFINITION Cylindrotheca closterium str. Reim and Lewin (diatom). REFERENCE 1 AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E.V., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution 46, 1801-1817 (1992) COMMENT Corresponding GenBank entry: M87326|g174229 common_name= diatom geog_source= Severn Estuary, UK isolate_name= Reim and Lewin BASE COUNT 470 a 346 c 467 g 504 u 6085 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUACGCU -CGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AAUAUCUUA- 121 ---------- ----CUUUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-CGGC-U -C-AUUA-UA -UCAG-UUAU -AG-UUUAU- -UUGA-UA-- 241 GUCCCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGU CAA------- ---------- ---------- 361 --U-ACCC-- ---------- ---------- ---------- ---------- -----UUCUG 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---GGG-UA- ---GUAU-UU -AUUA-GAUU GAA------- --ACCAA-C- ---------- 601 ---------- ---------- ---------- ---------- -------CCC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GGG------ 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 GAU--G-UGG U---GAUUCA --UA-AUAAG CUUGCGGA-- -------UC- G----CA--- 1021 -UG----GC- ---------U UU-------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -GUAU-UGG- CCU----ACC A-UGGC-UU- 1201 UAA-CGGG-U -AACGGGAAA U-UAGGGUUU -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-CG---- 1861 -GGCCU---- --UUGU---A GG-U-C---- -U--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAACC CCUUA----- -------UCG A-GU-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 G-U--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GUAC--- --UUC---G- 2521 GCGGCCCGU- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------C- AC-----UAU ------GUG- 2641 ---------- ---------- AU-GG-AG-- -CUU------ ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- C-U------G AAGUC----- GC-CA----- ----UCCUUG GGU-GGAU-- 2821 ----CCUGU- -GU-GGC--- AUUAAGUUG- -U--C--GU- -GCA-GGGGA -U--GCC-C- 2881 --------AU --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCCG-- UUGAAUAU-A 3001 U-UAGCA-UG G-AAUAAU-A GGAU-AGGA- C--C-UUGG- -UA------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCG CACC---AAG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUU-U 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACA-A- GGG------- 3661 -----AU--- ----UGGUGG A--------- -GU-U----- ---------- --UCGUUAU- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GUC----UC --C-AUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- AC---AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-CC-U G-CCU-GCUA A-AUA-G-GU U-G---CCU- -----AG-UG 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------AU U---UCACU- 5521 --GGG----U G-A--A-U-- ------CU-U C-UU-AGAGG -GA---CGU- G-CA-UU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------C UAUUA-GA-U G-C-AGGAAG -AUAGGGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-U-C 5761 AA-CG-AG-U UCUA------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCU ------U-GG 5881 CC--GAGA-- GG-CC----U --GGG-CAAU --CU-UUUGA -AC-CU-GC- AU-C-G-UG- 5941 AUA-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCA-GA-U CAUCAA--UC U-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGC-CUC -GGGA----- --UUG-U-GG CGAG---UU- ----CCC--- ---------- 6181 ---------- ---------- ---------- --UUCAUU-- --GG-G--A- ----G----- 6241 ---------- --------UU -UG--U-C-G C-GA---GAA C---UU-GUC UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Ochr.danic 7872 bp RNA RNA 02-JUL-1998 DEFINITION Ochromonas danica (chrysophyte alga). REFERENCE 1 AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) COMMENT Corresponding GenBank entry: M32704|g168936 common_name= chrysophyte alga BASE COUNT 478 a 341 c 464 g 505 u 6084 others ORIGIN 1 .........A ACCUGGU-UG A--U-UC-UG CC-AG-UA-G --CAUACGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCAAUCUU- 121 AU-------- ----ACGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-UA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUCCUUGCUA ---------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAG CAA------- ---------- ---------- 361 --U-CCCU-- -----GAC-- ---------- ---------- ---------- -----UUAG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---AGG-GU- ---GUAC-UU -AUUA-GAUA GAA------- --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- -------GGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCUU---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UGU--U-UGG U---GAUUCA --UA-GUAAU UUUCGGA--- -------UC- G----A---- 1021 -UC------- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- ------GAU- -C-GA-UGCA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -GUAU-UGG- CCU----ACC A-UGGC-AU- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGUC- AAU------- ----AAAUAA -CAAU----- -GU-UG---- 1861 -GGCC----- --UUCG---- GG-U-C---- -U--GA-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------UCG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-ACU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AAAUU 2221 C-U--G-AU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UUCG--- --GAU---G- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------GGC- CC----CAAG ------GGGU 2641 U--------- --------AG UA-CC-GU-- -CU------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- UU-------C GGA------- AU-CA----- ----UCCUCG AGA-GGAA-- 2821 ----CACGU- -CU-GUC--- AUUCAGUUG- -A--U--GG- -GCG-UGGGA -U--UCU-C- 2881 --------GU --CUUUUACU GUG-AGUAAA C-UAGAGU-G UUC-A-AA-G -C-AGAC--- 2941 A-UCA----- ---------- ---------- ---------- ---UGUCA-- UUGAAUAC-G 3001 U-UAGCA-UG G-AAUAAU-A AGAU-AGGA- C--C-UUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUU--- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGA CUCC---AAG G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGUGG A----C---- -GU-U----- ---------- --GUAAUU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-AUCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-CC-U G-CCU-GCUA A-CUA-G-UC G-----UCU- -G---AA-UG 5221 C--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUA G---GCAUU- 5521 G-AGA---UC --C--G-A-- ------CU-U C-UU-AGAGG -GA---CUU- U-UG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GACUA-AC-C A-A-AGGAAG -UUAGGGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CACAU-G-C 5761 AG-CG-AG-U UCUU------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UU-GU 5881 CC--GAAA-- GG-UC---UG --GG--UAAU --CU-UGUCA -AU-GU-GU- GU-C-G-UG- 5941 AUA-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A U-GCG-GG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G A-UU-C-GG- 6121 UGAAAC-UUU -CGGA----- --CCG-U-GG UUCUU--G-- ---CCAC--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --GU-GG--- ----U----- 6241 ---------- -------GAG -AA--U-C-G U-GG---AAA G---UUAU-U UAAA-CCU-C 6301 A-U-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUU-~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Cost.costa 7872 bp RNA RNA 02-JUL-1998 DEFINITION Costaria costata (brown alga). REFERENCE 1 AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E.V., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution 46, 1801-1817 (1992) COMMENT Corresponding GenBank entry: M97958|g167309 common_name= brown alga BASE COUNT 448 a 372 c 501 g 495 u 6056 others ORIGIN 1 .........A AUCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUACGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGGCCUUU-- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-UA -UCAG-UCAU -AG-UUUAU- -UUGA-AA-- 241 GUCCCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAU GAA------- ---------- ---------- 361 --G-GCCC-- -----AACUG C--------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GCGGAC- 541 ---GGG-CU- ---GCAU-UG -AUUA-GACC GAA------- --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACG----- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 UUU--G-UGG U---GAAUCA --UA-AUCAC UUGCGGA--- -------UC- G----CA--- 1021 -CG----C-- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- -----GCGG- -C-GA-CGUU -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -GUAU-UGG- CCU----ACC A-UGGC-UU- 1201 UAA-CGGG-U -AACGGGGAA U-UGGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GG-A-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-CG---- 1861 -GGUUA---- --UAC----A AG-U-C---- -U--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------G-CA AUUU-AAAUC CAUCA----- -------UCG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- C-AAU-AG-C 2101 GUAU-AUU-- AAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 G-U--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -GCGGCCGU- -CCGG----- 2521 CGGGGC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UC- UU----UCAU U-----AGGG 2641 ---------- ---------C CG-UU-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UC- CGGUUUUUCG GCC------- GC-UC----- --CAUUCUCG GGU-AGCG-- 2821 ----UGUUG- -CU-GGC--- AUUAGGUUG- -U--C--GG- -CUU-CUUCG -C--GCC--- 2881 --------GU --CGUUUGCU GGG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---GGCG--- UUGGAUAC-A 3001 U-UAGCA-UG G-AAUA-U-G AGAU-AGGG- C--C-ACGA- -CG------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------GUC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCA CGUU---GUG G-UAA-UGAU UAACA-GGAA C-GGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-UACUG C-GAAA---C G---UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGCGG U----C---- -GU-U----- ---------- --AAUUUACA 3721 G--------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUCA-- ----GCA--- --------CC U-UCC----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U---CGUU-A 5161 AC-GAA-C-G AGACC-CC-C G-CCU-GCUA A-AUA-G-UG U-G---GCU- -----UA-CG 5221 C--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC U---GUGUA- 5521 --GGU----- --GCUC-G-- ------CU-U C-UU-AGAGG -GA---CUU- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GACUA-AC-C G-A-A-GAAG -UUGGGGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-G-C 5761 AA-CG-AG-U UCUUUUUUU- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UG-GG 5881 UC--GAGA-- GG-CC---CG --GGU--AAU --CU-GUUGA -AC-GU-GC- AU-C-G-UG- 5941 AUA-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCG-AG-U CAUCAG--CU C-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-G U-UU-C-GG- 6121 UGAAGA-UUC -CGGA----- --CUG-U-GG CUCG------ ----CGU--- ---------- 6181 ---------- ---------- ---------- GCUUCACG-- --GC-G---- ---------- 6241 ---------- -------CUC CUG--C-C-G U-GG---GAA G---UUAU-C UAAA-CCU-C 6301 A-A-CA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Scys.lomen 7872 bp RNA RNA 02-JUL-1998 DEFINITION Scytosiphon lomentaria (brown alga). REFERENCE 1 AUTHORS Kawai,H., Muto,H., Fuji,T. and Kato,A. TITLE A linked 5S rRNA gene in Scytosiphon lomentaria JOURNAL J. Phycol. 31, 306-311 (1995) COMMENT Corresponding GenBank entry: D16558 (bases 399 to 2216) common_name= brown alga BASE COUNT 456 a 371 c 488 g 503 u 6054 others ORIGIN 1 .........A AUCUGGU-UG A--U-UC-UG CC-AG-UA-G U-CAUACGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCGCUUU-- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUAA-UA -UCAG-UCAU -AG-UUUAU- -UUGA-AA-- 241 GUCCCUUACU A--------- ---------- --------CA -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAU AAA------- ---------- ---------- 361 --A-GCCC-- -----AACUG C--------- ---------- ---------- -----CUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---GCGGAC- 541 ---GGG-CU- ---GCAU-UG -AUUA-GACC GAA------- --ACCAA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGUC UUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GACGG---- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UUU--G-UGG U---GAAUCA --UA-AUCAC UUGCGGA--- -------UC- G----CA--- 1021 -CG----C-- ---------U UCG------- ---------- ---------- ---------- 1081 ---------- ---------- -----GCGG- -C-GA-CGUU -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUC- AG-CUUUGG- -AUGGUA-GG -GUAU-UGG- CCU----ACC A-UGGC-UU- 1201 UAA-CGGG-U -AACGGGGAA U-UGGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAG--CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -GC-CG---- 1861 -GGCUU---- --UUAC---A AG-U-C---- -U--GG-CAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------G-CA AUUU-AAAUC CAUCA----- -------UCG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGCGU U-GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 G-U--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- -GCGGCCGU- -CCGG----- 2521 CGGGGC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UC- CU----UCAU U-----GGGG 2641 ---------- ---------C CG-UU-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UC- UGGUUUUUCG GCC------- GC-UC----- --CAUUCUCG GGU-AGUG-- 2821 ----UGUCG- -CU-GGC--- AUUAGGUUG- -U--C--GG- -CUU-CUUCA -C--GCC-C- 2881 --------GU --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 U-UA------ ---------- ---------- ---------- ---GGCCA-- UUGGAUAC-A 3001 U-UAGCA-UG G-AAUAAU-G AGAU-AGGG- C--C-AC-A- -CG------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- -------GUC UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------GCA CGUU---GUG G-UAA-UGAU UAACA-GGAA C-GGUU---- ---------G 3421 GGGGUA-UU- CG--UA-U-U CAAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-UACUG C-GAAAA-GC ----UUUA-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUUA-G-A 3601 UAC-C-AU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGCGG U----C---- -GU-U----- ---------- --AAUUUA-G 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUCA-- ----GCA--- --------CC U-UCC----- 3901 ---------- GAGAAA-UC- A----AAC-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GAAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-CC-C G-CCU-GCUA A-AUA-G-UG U-G---GCU- -----UA-CG 5221 C--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U---GGCUA- 5521 --GGU----- --GCUC---- ------CU-U C-UU-AGAGG -GA---CUU- C-UG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GACUA-AC-- A-G-AGGAAG -UUGGGGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-G-C 5761 AA-CG-AG-U UUUAUUUU-- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UA-GG 5881 UC--GAGA-- GG-CC---UG --GGU--AAU --CU-UUUGA -AC-GU-GC- AU-C-G-UG- 5941 AUA-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UG-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-A C-GCG-AG-U CAUCAG--CU C-GCAU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-A-C- C-U-ACCGA- UU--GAAU-C A-UU-C-GG- 6121 UGAGGA-UCU -CGGA----- --UUU-U-GU UUUU------ ---UACG--- ---------- 6181 ---------- ---------- ---------- --CUUACG-- --GC-G---- ---------- 6241 ---------- ------UUUC AGA--C-C-G A-GA---GAA G---UCAU-C CAAA-CCU-C 6301 A-U-GA-UUU AG-AGGA--- AGG-UGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---------G -UGAA-CCU- GCGGAAG-GA UCAUUA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Prpr.purpr 7872 bp RNA RNA 02-JUL-1998 DEFINITION Porphyra purpurea str. Avonport (red alga). REFERENCE 1 AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: L26201|g507796 common_name= red alga isolate_name= Avonport BASE COUNT 465 a 384 c 498 g 492 u 6033 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACACCUCGU 121 UUUCUUUUUU GUACUCGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -CCAG-UUAU -AG-UUUCU- -UUGA-AC-- 241 GUGCCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCCU ACA------- ---------- ---------- 361 --C-GCCC-- -----GAC-- ---------- ---------- ---------- -----UCAC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---AGG-UG- ---GUAU-UU -AUUA-GAUA AAAA------ --ACCUU-CG ---------- 601 ---------- ---------- ---------- ---------- -----CACAG UGAC------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUGUG---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UGU--U-AGA U---GAUUCA --UA-AUAAC UCUCGGA--- -------UC- G----CA--- 1021 -UG----GC- ---------C UAGA------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GA -GUAG-UGG- UCU----ACC A-UGGU-GU- 1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCC- ---AACAC-- 1801 ---GGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CGAU----- -AG-GG---- 1861 -GGCCU---- --UUU----A GG-U-U---- -U--UC-UAA -UCG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-GA AUUU-AAACC UCUCA----- -------CCG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUAU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGCG--- -GACA----- 2521 CAGAAG---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- GC----UCCG ------GUUG 2641 ---------- ---------- CA-GC-UG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 -------UGA ACG------G UCUG------ CC-CC----- --UAAUUCUG GGA-CGCGGU 2821 GU--GCGG-- -GA------- CUUUACUGU- -CU-C----- ---UGCG-CA CC--UGC-GG 2881 G--CCG--GA --CGUUUACU GUG-AAGAAA U-UAGGGU-G UUC-A-AA-G -C-AUGC--- 2941 G-UU------ ---------- ---------- ---------- ---CGCUA-- -UGGAUAC-G 3001 U-GAGCA-UG G-AAUAAU-A GAAU-AGGA- C--U-UGGG- -C-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUC- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CGGG GACC----AA G-UAA-UGAU UAAUA-GGGA U-AGUU---- ---------G 3421 GGGGCA-UU- CG--CA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUGA-U 3481 GG-A-AG-AC GGAC-UACUG C-GAAA--GC A---UCUG-C C-AAG----- ---GAUGUUU 3541 U-C--UU-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-G- GAG------- 3661 -----AU--- ----UGGCGG G----G---- -AU-U----- ---------- --UGUUGUAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAU----CC --C-GUCA-- ----GCA--- --------UC C-UGC----- 3901 ---------- GGGAAA-CC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A CAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A GG-A-GAAUG AUU-G-ACA- 4621 GA--CUGAAA GC--UCUUU- CUUGAUU-U- UUUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A C-CCU-GCUA A-AUA-G-GU G-----CGC- -----GU-A- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --UGCUCGUA C-----UGC- 5521 --GUU----G --C--A-C-- -----UCU-U C-UU-AGAGG -GA---CUA- U-AU-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GU-A U-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-U-C 5761 AA-CG-AG-U CACACUUUUA CG-------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 UU--UUAU-- GA-CC----U --GGG-UAAU --CU-UGGGA -AC-GU-GC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---UC-A U-UGCAAUU- U-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-UGUA-G-G C-GCA-GG-U CAUCAG--CC U-GCGC-C-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GA- 6121 UGAAGU-GCU -UAGA----- UCUUG-G-GG AGCGGCCUG- ---GAGG--- ---------- 6181 ---------- ---------- ---------- -UCAAAGU-- --CC-AG-U- ----A----- 6241 ---------- ------CGUG -AA--C-C-U U-GA---AAA G---AUCA-U UGAA-UCU-U 6301 A-C-CC-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Prpd.aerug 7872 bp RNA RNA 02-JUL-1998 DEFINITION Porphyridium aerugineum UTEX 255 (red alga). REFERENCE 1 AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia 33, 369-377 (1994) COMMENT Corresponding GenBank entry: L27635|g463193 common_name= red alga BASE COUNT 449 a 351 c 495 g 467 u 6110 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UU-A U-GAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AAUCUUU--- 121 AUA------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GRA-UGGC-U -C-AUUA-AA -ACAG-UCAU -AA-UUUAC- -UYGA-UA-- 241 GUACCUUUUA ---------- ---------- --------CU -U-GG-AUAC C-C-CUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCGC CAA------- ---------- ---------- 361 --C-AUCC-- -----GAC-- ---------- ---------- ---------- -----UCRC- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GRA- 541 ---GGA-UG- ---GUAU-UU -AUUA-GCCG CA-------- --ACCAG-CC ---------- 601 ---------- ---------- ---------- ---------- -------GGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -UU--U-UGG U---GAGUCA --UA-AUAAC UUUUCGGA-- -------UC- G----C---- 1021 -A-------- ---------G CAA------- ---------- ---------- ---------- 1081 ---------- ---------- -------UG- -C-GA-CGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -ACGGUA-GG -GUAG-UGG- CCU----ACC G-UGGU-GU- 1201 UUA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGYA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACG--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -GG-GA---- 1861 -GACCU---- --UUU----G G--U-U---- -G--AC-CAC -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA YGAGU----- 1981 ------A-CA UUUU-AAAUC ACUUA----- -------ACG A-GU-AUCCA UUGGAG-GG- 2041 -CAA-G-W-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUA-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAGAU 2221 G-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGUG--- -GASA----- 2521 UYGUGC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UG- GG----GCAA ------CUCG 2641 ---------- ---------- GU-GY-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------G UUC------C GCC------- GC-CU----- -----UCCUC GGU-GUGA-- 2821 -G--CGGUG- -C--UGG--- CAUUAAGU-- -UG-U--UG- -G-----UAG CG--UGA-GC 2881 G--CCG---A --CUUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-UU------ ---------- ---------- ---------- ---UGCUG-- -UGAAUAC-A 3001 U-UAGCA-UG G-GAUAUU-G GAA--GAAG- C--U-UUUG- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CU UA---UU--C GUUGGUU-G- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------AUA GGCY---GGA A-GCA-UGGU CAAGA-GGAA C-GGUC---- ---------G 3421 GGGGCA-CU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUU-U 3481 GA-A-AG-AC GAAC-CGCUG C-GAAA--GC G---UUUG-C C-AAG----- ---GACGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACUAU-G -CCGACU-G- GGG------- 3661 -----AU--- ----UGGUGG A----C---- -GU-U----- ---------- --CCAAUCU- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-AUCA-- ----GCA--- --------CC C-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U GUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--UCA- 4021 CC-G-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-G AA-G-UUAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UUUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUGAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-CUA-G-UG G-----AUUG -----AA-UC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC G----GAUUG 5521 --AAU----G --G--A-A-- ------CU-U C-UU-AGAGG -GA---CAC- C-CU-GG--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- G-CAA-CC-A G-G-AGGAGG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-G-C 5761 AG-CG-AG-U GUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UU-GG 5881 UC--GGAA-- GG-CC---UG --GG--GAAU --CU-UGUGA -AA-AU-GC- AU-C-G-UG- 5941 CUG-GGGAU- AGA---UU-A U-UGUAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-UGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GGAU-G G-UC-C-GG- 6121 UGAAAU-GUU -CGGC----- --CUG-U-GC UUGCUUU--- ----GGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CU-C---- ---------- 6241 ---------- ------UGGC -GA--G-U-G C-GG---AAA G---UUCA-U UAAA-CCU-U 6301 A-U-CA-UCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -CUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGC~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Palm.palma 7872 bp RNA RNA 02-JUL-1998 DEFINITION Palmaria palmata (red alga). REFERENCE 1 AUTHORS Bird,C.J., Murphy,C.A., Rice,E.L. and Ragan,M.A. TITLE The 18S rRNA gene sequences of four commercially important seaweeds JOURNAL J. Appl. Phycol. 4, 379-384 (1992) COMMENT Corresponding GenBank entry: Z14142|g20608 common_name= red alga geog_source= Sandy Cove, Halifax Co., Nova Scotia (44 28'N, 63 34'W) BASE COUNT 428 a 385 c 518 g 440 u 6101 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UG-G U--AUAUGCU -UGU-CUC-A 61 AG-GACUAA- -GCCAUGC-A AGU-GUAAGU ---------- -------AUA AGUAAUUUUU 121 A--------- ----CGACGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-GGUA-AA -ACAG-CUAU -AG-UUUCU- -UCGA-UG-- 241 GUACCUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCCA CAA------- ---------- ---------- 361 --C-GCGG-- -------GG- ---------- ---------- ---------- -----UAA-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------C--- 541 ---CCG-UG- ---GUAC-CA -AUCA-GAUA UCAA------ --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- UGU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----G-UGG U---GAUUCA --UG-AUUUU UUUUCUGA-- -------UC- G----C---- 1021 -AC------- ---------G UUA------- ---------- ---------- ---------- 1081 ---------- ---------- ------GUG- -C-GA-CGCA -UCG-UUC-A AAUUU-CUGA 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-AG -GUAU-UGU- CUU----ACC A-UGGU-UG- 1201 UGA-CGGG-U -AGCGGACCG U-GGGUGCGG -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAU -CAAU----- -AG-AG---- 1861 -GGCGU---- --UUAU---A CG-U-C---- -U--UC-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AGGU-AAACA GCUUA----- -------UCG A-GG-AUCCA GCAGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUGUA-AG-C 2101 GUAU-ACC-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 U-G--G-CG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGC--- -----CCGU- 2521 GCUGUG---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- GU-----AAU ------GCGU 2641 G--------- -------CGG CG-CU-GG-- -G-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------G -CG------- CG-CU----- ----UUUGUG GAG-GGCG-- 2821 -G--CGCGU- -U--GUGG-- CUUCACUG-- -UC-G--CG- -G------CG UG--UCG-GC 2881 G--CC---AC --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-UU------ ---------- ---------- ---------- ---UGCCG-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C----UUGG- -UU------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------UC UA--UUU--U GUUGGUUUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UGAG AGCC----GA G-UAA-UGAU UAAGA-GGGC C-GGUU---- ---------G 3421 GGGGCA-UU- UG--UA-U-U CCAG-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUGC-U 3481 GG-A-AG-AC AAAC-CGCUG C-GAAA--GC G---UCUG-C C-AAG----- ---GACGAUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UAAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- U--AC-UA-U -AAACGAU-G -AGAACU-G- GGG------- 3661 -----AU--- ----CGGGCA G----G---- -CA-U----- ---------- --UACGAU-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CU --G-UCCG-- ----GAA--- --------CC C-UCC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGCU-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--UCA- 4021 CC-G-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAG-C-G AGACC-UG-G G-CGU-GCUA A-CUA-G-GG GC----CGC- -----UA-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CAUUG U-----GUA- 5521 --GCU-GUUC -GC--C-C-- ------CU-U C-UU-AGACG -GA---CUG- C-GG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GU-C C-G-CGGAAG -CUCCAGGC- AAUAACAGG- UCUG-AG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -GCGGA-C-C 5761 AA-CG-GG-U GA-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------GG -----AU-GC 5881 GC--GAAA-- GC-GU---UU --CC--CAAU --CC-C--CA -AA-UC-CG- CU-C-G-UG- 5941 CUG-GGGAU- AGA---GG-C U-UGCAAUU- U-UCCCUCU- UG-AA-C-GA GGA-AUACC- 6001 U-UGUA-A-G C-GUG-GG-U CAUCAG--CC C-GCGC-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G A-UC-C-GG- 6121 UGAGGC-UUU -GGGA----- --CUG-CCGC GGUU---GA- ---GGCG--- ---------- 6181 ---------- ---------- ---------- ----UUUA-- --CG-CC--- ----C----- 6241 ---------- -------UGG -CC--G-C-A GUGG---GAA C---UUAU-C CGAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA -CAGAAU~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Grac.verru 7872 bp RNA RNA 02-JUL-1998 DEFINITION Gracilaria verrucosa str. Norway isolate (red alga). REFERENCE 1 AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A., Liu,Q.Y. and Ragan,M.A. TITLE Nucleotide sequences of the 18S ribosomal RNA gene from the red algae Gracilara tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp. JOURNAL Nucleic Acids Res. 18, 4023-4024 (1990) COMMENT Corresponding GenBank entry: M33638|g168193 common_name= red alga isolate_name= Norway isolate BASE COUNT 454 a 366 c 498 g 453 u 6101 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UG-G U--AUAUGCU -UGU-UUA-A 61 AG-GACUAA- -GCCAUGC-A AGU-GCAAGU ---------- -------AUG AGUGAAUU-- 121 GUA------- ----CAACGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-GGUA-AA -ACAG-CUAU -AA-UUUCU- -UCGG-UG-- 241 CUAAAUACUA ---------- ---------- --------CU -C-GG-AUAC C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCCU CCA------- ---------- ---------- 361 --A-AAC--- -----GAC-- ---------- ---------- ---------- -----GCAA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------G--- 541 ---UCG-UG- ---GUAC-AA -AUU-AGAGA UACAA----- --GCCAA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGG U---GAUUCU A--G-AUUUU UUUUCUGA-- -------UC- G----C---- 1021 -A-------- ---------A UUAU------ ---------- ---------- ---------- 1081 ---------- ---------- -------UG- -C-GA-CGCA -CCG-UUC-A AAUUU-CUGA 1141 --CCU-AUC- AA-CUUUGG- -AUGGUA-AG -GUAU-UGG- CUU----ACC A-UGGU-UG- 1201 UGA-CGGG-U -AACGGACCG U-GGGUGCGG -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-ACUU-ACC C-AA-UCCGG ----ACA--- 1801 -C-CGGGA-G GUA-GUGAC- AAG------- ----AAAUAU -CAAU----- -AG-AG---- 1861 -GGCCC---- --GAU----G GG-U-U---- -U--UC-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AGGU-AAACA GCUUA----- -------UCG A-GG-AGCCA GCAGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUGUA-AG-C 2101 GUAU-ACC-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 U-G--G-UG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UCUG--- -ACUU----- 2521 GGGUC----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------GU- CC----UCGC ------GGAC 2641 ---------- ---------- -G-CU-CU-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------A- GGU------U GGG------- CG-CC----- ----UUUGUG GAU-GGGA-G 2821 CU----AGG- -U--GGUG-- CUUAAUUG-- -GA-U--CA- -CC------U AG--CUG-CC 2881 G--CC---AC --CGUUUACU GUG-AAAAAA A-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-AU------ ---------- ---------- ---------- ---UGCCC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C----CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUU--U GUUGGUUUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CUUG AAUC----GG G-UAA-UGAU UAAGA-GGGA C-GGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U CCGA-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUGU-C 3481 GG-A-AG-AC GAAC-AGCUG C-GAAA--GC G---UCUG-C C-AAG----- ---GACGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UAAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- U--AC-UA-U -AAACGAU-G -AGGACU-G- GAG------- 3661 -----AU--- ----CGGAUA A----G---- -AC-UG---- ---------- --AUAUA--- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GGC----UU --A-UCCG-- ----GCA--- --------UC C-UUC----- 3901 ---------- GAGAAA-UC- A----AAG-U GUU-UGCU-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--UCA- 4021 CC-G-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -AG-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UCUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAG-C-G AGACC-UG-G G-CGU-GCUA G-CUA-G-GC GC----CGU- -----UA-CU 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUU U---UGGUA- 5521 --GCGAGGCU --U--G-C-- ------CU-U C-CU-AGACG -GA---CUG- U-GG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GC-C C-A-CGGAAG -CUCCAGGC- AAUAACAGG- UCUG-AG-AU 5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CCG -CACGCGUGC UA-CACU-GA -ACGGG-U-C 5761 AA-CG-AG-U UA-------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GGA ------U-AU 5881 GC--GAAA-- GC-AU----U --UCC-CAAU --CU-C--UA -AA-UC-CG- UU-C-G-UG- 5941 AUG-GGGAU- CGA---CG-G U-UGCAAUU- U-UCCGUCG- UC-AA-C-GA GGA-AUACC- 6001 U-UGUA-A-G C-GCG-GG-U CAUCAU--CC C-GCGC-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G G-UC-C-GG- 6121 UGAGGC-CUU -GGGA----- --GAG-C-UA GAUGAA---- ---CUGA--- ---------- 6181 ---------- ---------- ---------- ----UUAU-- --UC-AG--- ---------- 6241 ---------- ------AUCU -UU--U-G-G C-UU---GAA C---UUGG-U CAAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAGAA~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Chdr.crisp 7872 bp RNA RNA 02-JUL-1998 DEFINITION Chondrus crispus (carragheen; carrageenophyte alga). REFERENCE 1 AUTHORS Bird,C.J., Murphy,C.A., Rice,E.L. and Ragan,M.A. TITLE The 18S rRNA gene sequences of four commercially important seaweeds JOURNAL J. Appl. Phycol. 4, 379-384 (1992) COMMENT Corresponding GenBank entry: Z14140|g17953 common_name= carragheen; carrageenophyte alga geog_source= Sandy Cove, Halifax Co., Nova Scotia (44 28'N, 63 34'W) BASE COUNT 437 a 369 c 521 g 451 u 6094 others ORIGIN 1 ........CA ACCUGGU-UG A--U-CC-UG CC-AG-UG-G U--AUAUGCU -UGU-CUC-A 61 AG-GACUAA- -GCCAUGC-A AGU-GUAAGU ---------- -------AUG AGUGAAUU-- 121 GUA------- ----CAACGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-GGUA-AA -ACAG-CUAU -AG-UUUCU- -UCGA-UG-- 241 GUAACUACUA ---------- ---------- --------CU -U-GG-AUAC C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAAGCCU UAA------- ---------- ---------- 361 --A-GCGA-- -------CA- ---------- ---------- ---------- -----UUUA- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----UG--- 541 ---UCG-UG- ---GUAU-AA -AUUG-GAGA UACAA----- --ACCAA--- ---------- 601 ---------- ---------- ---------- ---------- ---------- UGU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----U-UGG U---GAUUCA --CA-AUUUC UUUUCUGA-- -------UC- G----C---- 1021 -AC------- ---------G UUA------- ---------- ---------- ---------- 1081 ---------- ---------- ------GUG- -C-GA-CGCA -UCG-UUC-A AAUUU-CUGA 1141 --CCU-AUC- AA-CUUUGG- -AUGGUA-AG -GUAU-UGU- CUU----ACC A-UGGU-UG- 1201 UGA-CGAG-U -GACGGAUCG U-GGGUGCGA -GACU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCGG ----AUA--- 1801 -C-CGGGA-G GUA-GUGAC- AAG------- ----AAAUAG -CAAU----- -AG-AG---- 1861 -GGCCC---- --AAC----G GG-U-U---- -U--UC-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGA----- 1981 ------A-CA AGGU-AAACA GCUUA----- -------UCG A-GG-AGCCA GCAGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CUGUA-AG-C 2101 GUAU-ACC-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAGGU 2221 U-G--G-CG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGCA--- -GUCC----- 2521 AGGGC----- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------GU- CC----UCGC ------GGAC 2641 ---------- ---------- GG-AU-CU-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------G- GA-----GUU GGC------- CG-CC----- ----UUUGUG GAU-GGGG-- 2821 -G--CCUAG- -U--GGAG-- CUUCACUG-- -CU-U--CA- -UU-----GU GG--UCG-CU 2881 G--CC---AC --CGUUUACU GUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 G-UU------ ---------- ---------- ---------- ---UGCCA-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAU-A GAAU-AGGA- C--C-UGUU- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UG--UUU--U GUUGGUUUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------UGAG GAUC----GG G-UAA-UGAU UAAGA-GGGA C-GGUU---- ---------G 3421 GGGGCA-UU- UG--UA-U-U CCGG-C-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUGG-C 3481 GG-A-AG-AC AAAC-GGCUG C-GAAA--GC G---UCUG-C C-AAG----- ---GACGUUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UAAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- U--AC-UA-U -AAACGAU-G -AGGACU-G- GGG------- 3661 -----AU--- ----CGGGGA G----G---- -AC-U----- ---------- --GUAUUUU- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GGC----CU --A-CCCG-- ----GCA--- --------CC C-UUC----- 3901 ---------- GGGAAA-CC- A----AAG-U GUU-UGCU-U -UCU-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--UCA- 4021 CC-G-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CG-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GU-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UCUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAG-C-G AGACC-UG-G G-CGU-GCUA G-CUA-G-GC G-C---CAG- -----UA-CC 5221 G--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UUUU U---UGGUA- 5521 --CUG-AGGC U-U--G-C-- ------CU-U C-CU-AGACG -GA---CUG- U-GG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GU-C C-A-CGGAAG -CUCCAGGC- AAUAACAGG- UCUG-AG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGUGC UA-CACU-GA -GCGGG-U-C 5761 AA-CG-GG-U G--------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------AGG -----AU-GU 5881 GC--GAGA-- GC-GC---UU --CCU--AAU --CU-C--UA -AA-UC-CG- CU-C-G-UG- 5941 CUG-GGGAU- CGA---GG-C U-UGCAACU- U-UCCCUCU- UG-AA-C-GA GGA-ACACC- 6001 U-UGUA-A-G C-GUG-GG-U CAUCAU--CC C-GCGC-U-G -AAUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAGU-G G-UC-C-GG- 6121 UGAGGC-CUU -GGGA----- --GGG-A-UG GAUG--GAU- ---UGUG--- ---------- 6181 ---------- ---------- ---------- -----UUU-- --CA-CA-A- ---------- 6241 ---------- ------ACUA -UC--U-G-G C-CC---AAA C---UUGG-U CAAA-CCU-U 6301 A-U-CA-CUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA CAGAAUU~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Pavl.salin 7872 bp RNA RNA 02-JUL-1998 DEFINITION Pavlova salina str. Plymouth 486 (haptophyte). REFERENCE 1 AUTHORS Cavalier-Smith,T., Allsopp,M.T.E., Chao,E.E. and Couch,J.A. TITLE Haptophyte 18s ribosomal RNA phylogeny and signature sequences JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: L34669|g511873 common_name= haptophyte isolate_name= Plymouth 486 BASE COUNT 449 a 371 c 486 g 473 u 6093 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG UC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCACCUU-- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUUAU- -UUGA-UG-- 241 GUACCUUACU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAG GAA------- ---------- ---------- 361 --A-UCUC-- -----GAC-- ---------- ---------- ---------- -----UUCG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AGAA------ --ACCGA-CG ---------- 601 ---------- ---------- ---------- ---------- -------CGG GCAA------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCGG---- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UGC--G-UGC U---GAGUCA --UA-CUAAC UGUUCGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------U UAC------- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AG-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGC-GU- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCUC---- --UUC----G AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGC---- ----GAGCG- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UG- CC-----AUG ------GGUA 2641 ---------- --------UG CA-CU-G--- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- GC-------- GU-UU----- ----GUUU-- ---------- 2821 CC---UCUU- -CU--GC--- CGGUGCUUG- -G--C--UU- -CGG-UCGGG UG--UCG-G- 2881 --------CA --CGUUUACU UUG-AGAAAA U-CAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-AUU----- ---------- ---------- ---------- ---GCCAU-- -UGUAUGU-G 3001 U-UAGCA-UG G-GAUAAU-G GAAU-AGGA- C--C-UUGG- -UG------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CGAU CGCC---GAG G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------A 3421 GGGGCA-CU- CG--UA-U-U CCGU-A-G-A G-A-GAG-GU GAAA-UUC-U UAGACCCA-C 3481 GG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AGG----- ---GAUGUUU 3541 U-C--AC-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GAUG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACCAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----UGGUGG G----U---- -GU------- ---------- --CGUCUUUU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --C-AUCA-- ----GCA--- --------CC U-UUC----- 3901 ---------- GAGAAA-UC- A----GAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UU-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- AAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-AUA-G-GU C-GUC----- -----CA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CACUG U----GUUG- 5521 ------UGCA --G--A-U-- ------CU-U C-UU-AGAGG -GA---CUG- U-CG-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AUCCA-AC-C G-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-U-C 5761 AU-CG-AG-U CUC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UG-UA 5881 UC--GAAA-- GG-UA---UG --GGU--AAU --CU-GUUGA -AC-CU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GUG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GGAU-G G-UC-C-GG- 6121 UGAGGU-UUU -CGGA----- --CUG-G-CG CAACG--CA- ---GCGG--- ---------- 6181 ---------- ---------- ---------- ----UUUU-- --CC-GU-C- ----G----- 6241 ---------- -------UGA -UG--C-A-C C-GG---GAA G---UCAC-C CAAA-CCU-U 6301 A-U-CA-UCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Emil.huxle 7872 bp RNA RNA 02-JUL-1998 DEFINITION Emiliania huxleyi str. 920PML Hay and Mohler CCMP 374 (flagellate alga; haptophyte). REFERENCE 1 AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E.V., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution 46, 1801-1817 (1992) COMMENT Corresponding GenBank entry: M87327 geog_source= Gulf of Maine common_name= flagellate alga; haptophyte isolate_name= 920PML Hay and Mohler BASE COUNT 460 a 404 c 495 g 450 u 6063 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AGCGACU--- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -GG-UUUAU- -UUGA-UG-- 241 GUACCUUGCU A--------- ---------- --------CU -U-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACAUGCAG GAG------- ---------- ---------- 361 --U-UCCC-- -----GACU- ---------- ---------- ---------- -----CAC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGA-- 541 ---GGG-AU- ---GUAU-UU -AUUA-GAUA AGAA------ --ACCAA-A- ---------- 601 ---------- ---------- ---------- ---------- ------CCGG UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCGG----- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 UGC--G-UGC U---GAGUCA --UA-AUAAC UGCUCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------U CUAC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGGU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AG-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGC-GU- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GU A-AAUU-GCC CGAA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AG---- 1861 -GGCUA---- --UUU----U AG-U-C---- -U--UG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-ACAUC UCUUC----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- AAAGUUGU-U --GCAGUU-- ----AAAACG CUCGUAGUCG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGGCCG A--------- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UG- CC----GAUG ------GGUA 2641 ---------- --------UG CA-CU-GG-- -CC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------G GCGCG----- UC-CU----- ----UCCAC- CCG-GAGA-- 2821 CC---GCGC- -CU-ACU--- CUUAACUGA- -G--C--GG- -GCG-CGGG- -A--GAC-GG 2881 --------GU --CUUUUACU UUG-AAAAAA U-CAGAGU-G UUU-C-AA-G -C-AGGC--- 2941 A-GU------ ---------- ---------- ---------- ---CGCUC-- UUGCAUGG-A 3001 U-UAGCA-UG G-GAUAAU-G AAAU-AGGA- C--U-CUGG- -UG------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------C UA--UUU--U GUUGGUUU-- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ------CGAA CACC---GGA G-UAA-UGAU UAACA-GGGA C-AGUC---- ---------A 3421 GGGGCA-CU- CG--UA-U-U CCGC-C-G-A G-A-GAG-GU GAAA-UUC-U CAGACCAG-C 3481 GG-A-AG-AC GAAC-CACUG C-GAAA--GC A---UUUG-C C-AGG----- ---GAUGUUU 3541 U-C--AC-UG A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CGUAGUCUU- A--AC-CA-U -AAACCAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGAGG A----U---- -GU-U----- ---------- --CCAUUUGU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-UUCA-- ----GCA--- --------CC U-UUC----- 3901 ---------- GGGAAA-CU- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UU-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- GAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-GC-A G-CCU-GCUA A-AUA-G-CG A-----CGC- -----GA-AC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------CCUC C----GUUC- 5521 --GCU----- --GG-A-G-- ------CU-U C-UU-AGAGG -GA---CAA- C-UU-GU--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- CUUCA-AC-A A-G-UGGAAG -UUCGCGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAC-U-C 5761 AA-CG-AG-U CUAUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-GA 5881 CC--GAGA-- GG-UC---CG --GGU--AAU --CU-UUUGA -AA-UU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAACU- A-UUAAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GUG-UG-U CAUCAG--CG C-ACGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G A-UC-C-GG- 6121 UGAGGC-CCC -CGGA----- --CUG-C-GG CGCCG--CA- --GCUGG--- ---------- 6181 ---------- ---------- ---------- ----UUCU-- --CC-AGC-- ---------- 6241 ---------- -----CGCGA -CG--C-C-G C-RG---GAA G---CU-GUC CGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAAGCUUGG 7861 AUCC~~~~~~ ~~ // LOCUS Clmy.reinh 7872 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas reinhardtii (green alga). REFERENCE 1 AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) COMMENT Corresponding GenBank entry: M32703|g167440 common_name= green alga BASE COUNT 435 a 393 c 506 g 457 u 6081 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUGCUU-- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUACCUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCGC ACA------- ---------- ---------- 361 ----ACCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-UC- ---GUAU-UU -AUUA-GAUA AAAG------ --GCCAG-C- ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUCUG----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ACC--UGCGG U---GAAUCA --UG-AUAAC UUCACGAA-- -------UC- G----UA--- 1021 -UG----GG- ---------C UCGU------ ---------- ---------- ---------- 1081 ---------- ---------- ----CCCGA- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -GACGGAGGA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAGA-UGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCGC---- --UUC----G CG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGGG--- -UG-G---U- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC-----UCU ------GGUG 2641 ---------- --------UG CA-CU-GC-- -UC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- G-C------U CC-------- AC-CU----- ----UCCUGC CGG-GGA-CG 2821 GG----CUC- -CU-GGG--- CUUCACUG-- -UC-U--GG- -GA------C UC--GGA-GU 2881 C--GG---CG --AGGUUACU UUG-AGUAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-A CGAU-AGGA- C--U-CUGG- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UC---U GUUGGUCUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UGG GACC---GGA G-UAA-UGAU UAAGA-GGGG U-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U CCGU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-C 3481 GG-A-AG-AC GAAC-AUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUACUU 3541 U-C--AU-UG A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUUA-G-A 3601 UAC-C-GU-- CGUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGCAG A----U---- -GU-U----- ---------- --CUUUUGAU 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --U-GCCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A CG-G-GAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UGUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGG-UUG C-CUUGU-CA --GG-UUGAU U--CCGGU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-AUA-G-UC AG----CAU- -----CG-C- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------ACC U-----GCG- 5521 --GUG----- CGC-CG-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C A-A-UGGAAG -UAUGAGGC- GAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -CGCGA-C-C 5761 AA-CG-AG-C CUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GG 5881 CC--GAGA-- GG-CC----C --GGG-UAAU --CU-U-GUA -AA-CC-GC- GU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAGUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GGGU-G U-GC-U-GG- 6121 UGAAGU-GUU -CGGA----- --UUG-A-GC UUGG------ --CUGGG--- ---------- 6181 ---------- ---------- ---------- ----GCAA-- --CC-UGG-- ---------- 6241 ---------- ------CCUU -----G-C-U U-GA---GAA G---UUCA-U UAAA-CCC-U 6301 C-C-CA-CCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG.... 7861 .......... .. // LOCUS Clrl.ellip 7872 bp RNA RNA 02-JUL-1998 DEFINITION Chlorella ellipsoidea str. 211-1a (green alga). REFERENCE 1 AUTHORS Huss,V.A.R., Seidel,B. and Kessler,E. TITLE JOURNAL Unpublished (1994) COMMENT Corresponding GenBank entry: X63520|g17985 common_name= green alga isolate_name= 211-1a BASE COUNT 567 a 499 c 612 g 561 u 5633 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUGCUUU- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUACCUUACU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCGC AAA------- ---------- ---------- 361 ----UCCC-- -----GACU- ---------- ---------- ---------- -----UCC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GUAU-UU -AUUA-GAUA AAAG------ --GCCG--AC ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------AC 961 UCG----CGG U---GAAUCA --UG-AUAAC UUCACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -GACGGAGGA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUU---- --UUC----A AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCAA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGC-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 C-G--G-AU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---GGGU--- -UC-C---G- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CG-----UUU ------CGGU 2641 G--------- --------UG CA-CU-GA-- -CG------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- G-C------G CCU------- AU-CU----- ----UGCUGC CGG-GGA-CG 2821 GG----CUC- -CU-GGG--- CUUAACUG-- -UC-C--GG- -GA------C UC--GGA-GU 2881 C--GG---CG --AGGUUACU UUG-AGUAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-A CGAU-AGGA- C--U-CUGG- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UCU--U GUUGGUCUG- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------UAG GACC---GGA G-UAA-UGAU UAAGA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUUA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGUGG A----U---- -GU-U----- ---------- --UAUUGAU- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UU --C-ACCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAA-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UGAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGG-UUG C-CUUGU-CA --GG-UUGAU U--CCGGU-A 5161 AC-GAA-C-G AGACC-UC-A A-CCU-GCUA A-AUA-G-UC A-----CGG- -----UC-GA 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ------UUUU U----UCGG- 5521 --CUG----- GCC--G-A-- ------CU-U C-UU-AGAGG -GA---CUG- U-UG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GACUA-GC-C A-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGU UA-CACU-GA -UGCAU-U-C 5761 AA-CG-AG-C CUA------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UU-GA 5881 CC--GAGA-- GG-UC----C --GGG-UAAU --CU--GCGA -AA-CU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUAAUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GCA-AG-U CAUCAG--CU U-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GGAU-G U-GC-U-GG- 6121 UGAAGC-GUC -CGGA----- --CUG-G-UA ACAG---GU- --GACGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCUG- ----C----- 6241 ---------- --------CU -GC--U-U-C C-GG---GAA G---UUCG-U UAAA-CCC-U 6301 C-C-CA-UCU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-UUU-- --------CC 6361 AAUUGGUACG CUGACAAAGA UGGUCCUUCC GUCAAGUUCA CGUACUGAAG CCUUAGCCGC 6421 CUCGCAA--- ---------- ---------- -------GA- CGACUCGCCG CGACUUCCUC 6481 UUAUCGAGA- -GGUAAACAA GGAGCGAGUU UAAAGGCUAG UCAGCUCAGC UGGCAACACC 6541 GUCAAAUUGC GGGAACAUCC UAAGAGCUAU CGACCACCAA GCAGGCUGCU GAAAGGCGUC 6601 UGUGGCCGGA UUAACGACUC CGGGUAAGGU AACAGCGUCG GUAGAUGAAG CUUCCCUGAC 6661 C--GGAGGCU GAAAUGGAUC AUCCGCA--- ---------- ---------- ---------- 6721 ---------G CCAAGUCCCU CCUCAGACGC UUUCAAGGUG UCUGGCGGGA UGCUGUUCAC 6781 AGACUAAAUG AUGGUGGGU- ---------C CGCUCAUGGC GAGUGGGCUU AAGAUAUAGU 6841 CGGGUCGCUC UGGAAACAGG GCAGC-GAAU CGCAGUACUU CACCG----- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Stau.M752 7872 bp RNA RNA 02-JUL-1998 DEFINITION Staurastrum sp. str. M752 (green alga). REFERENCE 1 AUTHORS Surek,B., Beemelmanns,U., Melkonian,M. and Bhattacharya,D. TITLE Ribosomal RNA sequence comparisons demonstrate an evolutionary relationship between Zygnematales and charophytes JOURNAL Pl. System. Evol. 191, 171-181 (1994) REFERENCE 2 AUTHORS Bhattacharya,D., Surek,B., Rusing,M., Damberger,S. and Melkonian,M. TITLE Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae) JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 9916-9920 (1994) COMMENT Corresponding GenBank entry: X74752|g406604 common_name= green alga isolate_name= M752 BASE COUNT 572 a 471 c 578 g 588 u 5663 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUA AACUCUUUU- 121 AUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUAU- -UUGA-UG-- 241 GUACCUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC AAA------- ---------- ---------- 361 --C-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GCAU-UU -AUUA-GAUA AAAG------ --GCC---AA U--------- 601 ---------- ---------- ---------- ---------- -----CCGAG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUCGG---- 901 ---------- ---------- ---------- ---------- ---------- -------CAU 961 UGC-----GG U---GAUUCA --UA-AUAAC UCCACGAA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -AACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----AUA--- 1801 -C-AGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --UAU----G AG-U-U---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 U-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGA--- -GG-A---U- 2521 UCGGUCU--- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- --------G- CC----UACC ------GGU- 2641 ---------- -------UGA UA-CU-GU-- -UU------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- C-U------C CA-------- UC-CU----- ----UCUUGC CGG-GGA-CG 2821 CG-----UC- -CU-GGA--- CUUCACUG-- -GC-U--GG- -GG------C GC--GGA-GU 2881 C--GG---CG --AUGUUACU UUG-AAAAAA U-UAGAGU-G UUC-A-AA-G -C-AGGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G CGAU-AGGA- C--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---GGA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGCGG A----A---- -CA-CA---- ---------- --UUUA---- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --C-GCCA-- ----GCA--- --------CC U-UGU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGUGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-UU A-----CGC- -----GA-AC 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC G---UGUUC- 5521 -GCGG----- --U-CA-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GC-C G-GCUGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAU-U-C 5761 AA-CG-AG-C CCC------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----UG-GA 5881 UC--GAAA-- GG-UU---UA --GGA--AAU --CU-C-UGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UU-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUACC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G A-UC-C-GG- 6121 UGAAGU-UUU -CGGA----- --UUG-C-GG CG-ACG-UG- -GACGGU--- ---------- 6181 ---------- ---------- ---------- ---UCGCC-- --GC-UGUU- ---------- 6241 ---------- ------GGUG ACG--U-U-G U-GA---GAA G---UUCA-U UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG------ ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- -------UUC CGUUUAUGAU CCUUCUCGCC CCGUUAUGGG UUCGAGUCGC 6541 ACGGAAGCCU UAGCACUAUG UGCAUUGUAU UUUAAUACGC UGCACCCGUG CUAGUGCCAA 6601 UGAUGAUGUC AUUGGUGCGA CGUCAUCAAA CUGCGGGAAA GCUCCUAUAU GGCAUGGGAU 6661 ACCAAGCACG GCAUCACACA UUGUGUGUGA UGAGUGUGGC UGAGUUAAUG CACUCGGGUA 6721 AGGUAACAAC CCCCAUGUCA AGAGGACCGA CCUGCAGCCA AGCCUUUGGU UAUACCAAGG 6781 GUGCUGUUCA CAGACUAAAU GAUGACGGGU UGCUAAUCAC AAAGCGUGAU UGCAGCUCAA 6841 GAUAUAGUCG GACUCACUCU AGAGUGAGAC AACACGUAAU ACCUUCCCGC ACGUGAAUUC 6901 ACCG------ ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Eqst.robus 7872 bp RNA RNA 02-JUL-1998 DEFINITION Equisetum robustum (scouring rush; rough horsetail fern). REFERENCE 1 AUTHORS Huss,V.A.R. and Kranz,H.D. TITLE Molecular evolution of ferns and allies, and their relationship to seed plants: evidence from complete 18S rRNA gene sequences JOURNAL Unpublished (1995) COMMENT Corresponding GenBank entry: X78890|g860933 common_name= scouring rush; rough horsetail fern BASE COUNT 454 a 389 c 493 g 474 u 6062 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AACUCGUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACCUUGCU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC CAA------- ---------- ---------- 361 --C-UCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GCAU-UU -AUUA-GAUA AAAG------ --GCCGA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 AAC--G-CGG U---GAUUCA --UG-AUAAC UUCCCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUGC------ ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-UG---- 1861 -GGCUU---- --UUAC---A AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -GC-G---U- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CC----UCUC ------GGGU 2641 G--------- --------UG CA-CU-GU-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- G-C------U CCG------- UC-CU----- ----UUCUGU CGG-GGA-CG 2821 CG----CUC- -CU-GGC--- CUUAACUG-- -UC-C--GG- -GA------C GC--GGA-UU 2881 C--GG---CG --AUGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UG------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G UGAU-AGGA- C--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---GGA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UGGCAG A----U---- -GU-UA---- ---------- --CUUCGA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --U-GCCA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-UU A-----CGC- -----GA-AG 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CUU G---UCUUC- 5521 --GUG----- --GCCA-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GG-C C-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAU-U-C 5761 AA-CG-AG-U UUAAC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UG-GG 5881 CC--GAGA-- GG-UC---CG --GGU--AAU --CU-UUUGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-UUU -CGGA----- --UUG-C-GG CGACG--CU- --GGCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCCG- ----G----- 6241 ---------- -------CGA -CG--U-U-G U-GA---GAA G---UUCA-U UAAA-CCU-U 6301 A-C-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Psil.nudu3 7872 bp RNA RNA 02-JUL-1998 DEFINITION Psilotum nudum (skeleton fork fern; wisk fern). REFERENCE 1 AUTHORS Huss,V.A.R. and Kranz,H.D. TITLE Molecular evolution of ferns and allies, and their relationship to seed plants: evidence from complete 18S rRNA gene sequences JOURNAL Unpublished (1995) COMMENT Corresponding GenBank entry: X81963|g861086 common_name= skeleton fork fern; wisk fern BASE COUNT 444 a 404 c 503 g 458 u 6063 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AGCACCUU-- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACCUUGCU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC CAA------- ---------- ---------- 361 --C-UCCC-- -----GACU- ---------- ---------- ---------- -----UCC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GCAU-UU -AUUA-GAUA AAAG------ --GCCGA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 UAU--G-CGG U---GAUUCA --UG-AUAAC UCUGCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------C CCGGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-UGCU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-UG---- 1861 -GGCUU---- --UUCA---A AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAACC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -GC-G---A- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CU----CCUC ------GGGU 2641 G--------- --------UG CA-CU-GG-- -UC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- G-C------U CCG------- UC-CU----- ----UCCUGC CGG-GGA-CG 2821 CG----GCC- -CU-GGC--- CUUCGCUG-- -GC-U--GG- -GG------C GC--GGA-UU 2881 C--GG---CG --ACGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UG------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-G 3001 U-UAGCA-UG G-AAUAAC-G UGAU-AGGA- C--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---RGA G-UAA-UGAU UAAUA-GGGA C-AGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-UA---- ---------- --CCUUGA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----UC --C-GCCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-UU A-----CGC- -----GA-AG 5221 G--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------AUC C---UCUUC- 5521 --GUG----- --GCCA-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- RCCUA-GG-C C-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAU-U-C 5761 AA-CG-AG-U UCUACC---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------CCC -----UG-GG 5881 UC--GAGA-- GG-CC---CG --GGU--AAU --CU-UGUGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-UUU -CGGA----- --UUG-C-GG CGACG--CC- --GGCGG--- ---------- 6181 ---------- ---------- ---------- ----UCCG-- --CC-GCCG- ----G----- 6241 ---------- -------CCA -CG--U-U-G U-GA---GAA G---UUCA-U UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCAA~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Polt.formo 7872 bp RNA RNA 02-JUL-1998 DEFINITION Polytrichum formosum (moss). REFERENCE 1 AUTHORS Capesius,I. TITLE A molecular phylogeny of bryophytes based on the nuclear encoded 18s rRNA genes JOURNAL J. Plant Physiol. 146, 59-63 (1995) COMMENT Corresponding GenBank entry: X80982|g1040747 common_name= moss BASE COUNT 459 a 385 c 492 g 476 u 6060 others ORIGIN 1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUA AACUCUUUU- 121 GUA------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACCUUGCU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC AAA------- ---------- ---------- 361 --C-UCCC-- -----GACC- ---------- ---------- ---------- -----UUCUU 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GUAU-UU -AUUA-GAUA AAAG------ --ACCGA-UG ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 AUU--G-CGG U---GACUCA --UG-AUAAC UCGUCGAA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UCAGC----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-UGUU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCCG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-UG---- 1861 -GGCUU---- --UUAC---A AG-U-C---- -C--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 C-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -GA-G---A- 2521 GCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC---UCUUU U-----GGUG 2641 ---------- --------UG CA-CU-GA-- -UC------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- C--------U CCG------- UC-CU----- ----UUUGGU CGG-GGA-CG 2821 CG----CUC- -CU-GGC--- CUUGAUUG-- -GC-U--GG- -GA------C GC--GGA-GU 2881 C--GA---CG --AUGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G CGAU-AGGA- C--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UG-UUCC--- GUUGGUCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---GGA G-UAA-UGAU UAAUA-GGGA C-GGUU---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-UUCUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACU-A- GGG------- 3661 -----AU--- ----UCGCGG G----U---- -GU-UA---- ---------- --AUUUGA-- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------U -GAC----CC --C-GCGA-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U AUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-UU A-----CGC- -----GA-AG 5221 A--------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------AUC U---UCUUC- 5521 --GCG----- --GCCA-A-- ------CU-U C-UU-AGAGG -GA---CUA- U-CG-GC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUCUA-GC-C G-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGAAU-U-C 5761 AA-CG-AG-U UUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UG-GG 5881 CC--GAGA-- GG-CC---CG --GGU--AAU --CU-UUUGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -AUUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-UUU -CGGA----- --UCG-C-GG CGACG--CC- --GGCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCCG- ----G----- 6241 ---------- -------CGA -CG--U-U-G U-GA---GAA G---UUCA-U UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UCA~~~~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Zami.pumil 7872 bp RNA RNA 02-JUL-1998 DEFINITION Zamia pumila (coontie; cycad; Seminole bread; Florida arrow root). REFERENCE 1 AUTHORS Nairn,C.J. and Ferl,R.J. TITLE The complete nucleotide sequence of the small-subunit ribosomal RNA coding region for the cycad Zamia pumila: Phylogenetic implications JOURNAL J. Mol. Evol. 27, 133-141 (1988) COMMENT Corresponding GenBank entry: M20017|g173592 common_name= coontie; cycad; Seminole bread; Florida arrow root BASE COUNT 443 a 394 c 507 g 469 u 6059 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUCAGU ---------- -------AUG AACUAUUUUG 121 GA-------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACUCUGCU A--------- ---------- --------CA -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC CAA------- ---------- ---------- 361 --A-UCCC-- -----GAC-- ---------- ---------- ---------- -----UUUUU 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ------GAA- 541 ---GGG-AC- ---GCAU-CU -AUUA-GAUA AAAG------ --GCCGA-UG ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC UUU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 CGU--U-UGG U---GAAUCA --UG-AUACC UUGAUGGA-- -------UU- G----CA--- 1021 -UG----GC- ---------C CUCGA----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGCA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CCG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-UG---- 1861 -GGCUC---- --AUC----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGC--- --CCG---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- UU----UUUU ------GGGU 2641 G--------- --------UG CA-CC-GG-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GU-------U UCG------- UC-CC----- ----UUUUGU UGG-CGG-CG 2821 CG----CAC- -CU-GGC--- CUUAACUG-- -UC-U--GG- -GU------C GC--GGU-UC 2881 C--GA---CG --CUGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 U-UA------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G GUAU-AGGA- U--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--C GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---GGA G-UAA-UGAU UAACA-GGGA C-GGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-CACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-U----- ---------- --GCUCUAAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-CAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-G G-CCU-GCUA A-CUA-G-CU AC----GCG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------GUU U----CUUU- 5521 --CGU----- -GGCCA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GG-C C-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U CUAUAA---- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- --------CC -----UG-GG 5881 CC--GGGA-- GG-UC---CG --GG--AAAU --CU-GGCGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G A-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UCG-U-GC CGACG--AC- --GGCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CU-GGGC- ----G----- 6241 ---------- -------CGA -CG--U-C-G C-GA---GAA G---UUCA-U UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Pinu.luchu 7872 bp RNA RNA 02-JUL-1998 DEFINITION Pinus luchuensis (pine). REFERENCE 1 AUTHORS Chaw,S.M., Long,H., Wang,B.S., Zharkikh,A. and Li,W.H. TITLE The phylogenetic position of Taxaceae based on 18S rRNA sequences JOURNAL J. Mol. Evol. 37 (6), 624-630 (1993) COMMENT Corresponding GenBank entry: D16446|g442479 sequenced_mol= DNA tissue_type= leaves dev_stage= adult tree cell_type= somatic common_name= pine BASE COUNT 423 a 395 c 476 g 437 u 6141 others ORIGIN 1 .......... .......... .......... .......... .......... ......UC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUG AAC-AUUUCA 121 GA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GGA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACUUUGCU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC CAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----CUU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GCAU-UU -AUUA-GAUA AAAG------ --GCCGG-CG ---------- 601 ---------- ---------- ---------- ---------- ------CGGG CUCG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CCCG----- 901 ---------- ---------- ---------- ---------- ---------- --------CU 961 AUU--C-CGG U---GAUUCA --UG-AUAAC UCGACGGA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-CGCU -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-AGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-UG---- 1861 -GGCUC---- --AUC----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACCU 2221 U-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGUC--- -ACGG----- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UUCU U-----GGUG 2641 ---------- --------UG CA-CU-GG-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- C-U------C ACG------- UC-UC----- ----UUCUGC CGG-CGG-CG 2821 UG----UUC- -CU-GGC--- CUUAAUUG-- -GC-U--GG- -GU------C GC--GGU-UC 2881 C--GG---CG --CCGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G CGAU-AGGA- G--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UG--UUC--C GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GACC---GGA G-UAA-UGAU UAAUA-GGGA C-UGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-U-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GG-A-AG-AC GAAC-CACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-U----- ---------- --GCUCUAAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCCA-- ----GCA--- --------CC U-UCU----- 3901 ---------- GAGAAA-UC- A----GAG-U GUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AC----GCG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UUC C----CCUU- 5521 --CGC----- -GGCCA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- UCCUA-GG-C C-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAA-C-C 5761 AA-CG-AG-U UUCUC----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC -----CU-GG 5881 CCC-GAAA-- GG-UU---UG --GGA--AAU --CU-UGCCA -AA-UU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---CC-A U-UGCAAUU- A-UUGAUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G A-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UCG-C-GC CGACG--AC- --GGCGG--- ---------- 6181 ---------- ---------- ---------- -----UUC-- --CU-GUCG- ----G----- 6241 ---------- -------CGA -CG--U-C-G C-GA---GAA G---UUCA-U UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG. .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Gntm.leybo 7872 bp RNA RNA 02-JUL-1998 DEFINITION Gnetum leyboldii subsp. woodsonianum (gnetophyte; deciduous vine, shrub or tree, source of fiber & edible seeds). REFERENCE 1 AUTHORS Nickrent,D.L. and Starr,E.M. TITLE High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants JOURNAL J. Mol. Evol. 39, 62-70 (1994) COMMENT Corresponding GenBank entry: L24045|g398549 common_name= gnetophyte; deciduous vine, shrub or tree, source of fiber & edible seeds BASE COUNT 445 a 385 c 506 g 464 u 6072 others ORIGIN 1 .......... .........G A--Y-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-CUAAGU ---------- -------AUG AACUAGUUCG 121 AA-------- ----CGGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUCU- -UUGA-UG-- 241 GUACAUUACU A--------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAG CAA------- ---------- ---------- 361 --G-UCCC-- -----GACU- ---------- ---------- ---------- -----CUU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GCAU-UU -AUUA-GAUA AAAG------ --GCCGA-Y- ---------- 601 ---------- ---------- ---------- ---------- -------GAG GCUUG----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUC------ 901 ---------- ---------- ---------- ---------- ---------- --------GU 961 UGU--U-CGG U---GAAUCA --UG-AUAAC UCGAUGGA-- -------UG- C----GA--- 1021 -CG----GC- ---------C UUUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCG -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-UG- 1201 UGA-CGGG-U -GACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --AUC----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUUU-AAAGC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUCU 2221 U-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGG--- --GUG---G- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ------CGC- CG-----AUC ------CGGU 2641 G--------- --------UG CA-UC-GA-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GC-------U CC-------- GU-UC----- ---CUUCUGU CGG-CGA-CG 2821 CG----GUC- -CU-GGC--- CUUAAUUG-- -GC-U--GG- -GU------C GC--GGC-UU 2881 C--GA---CG --CUGUUACU UUG-AAAAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---UGCUC-- -UGAAUAC-A 3001 U-UAGCA-UG G-AAUAAC-G CGAU-AGGA- U--U-UCGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UG--UUG--U GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAAUA-GGGA C-UGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GGG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG--C GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-U----- ---------- --GCUUUUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUCG-- ----GCA--- --------CC U-UCC----- 3901 ---------- GAGAAA-UC- A----GAG-U GUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CK-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---A AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-CAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AC----GUG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UAG C----CCUU- 5521 --CGC----- -GGACA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUCA-GG-C C-A-UGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGCAU-U-C 5761 AG-CG-AG-C UUCCU----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------UCC ----CUG-GU 5881 CC--GAGA-- GG-AU---CG --GGA--AAU --CU-UGUGA -AA-AU-GC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-U U-UGCAAUU- A-UCGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GUG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAC-G A-UC-C-GG- 6121 UGAAAU-GUU -CGGA----- --UUA-C-GG CGACG--AU- --GAUGG--- ---------- 6181 ---------- ---------- ---------- ---UUUCG-- --CC-AUCG- ----U----- 6241 ---------- -----CGCGA -CG--U-C-G U-GA---GAA G---CUCA-U UGAA-CCU-U 6301 A-U-CG-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UACC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGUAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Zea_mayW22 7872 bp RNA RNA 02-JUL-1998 DEFINITION Zea mays str. W22 (maize; corn; Indian corn). REFERENCE 1 AUTHORS Messing,J., Carlson,J., Hagen,G., Rubenstein,I. and Oleson,A. TITLE Cloning and sequencing of the ribosomal RNA genes in maize: The 17S region JOURNAL DNA 3, 31-40 (1984) COMMENT Corresponding GenBank entry: K02202|g168608 clone= lambda-(W22)R1 common_name= maize; corn; Indian corn biol_source= leaf tissue isolate_name= W22 NB: The 5' and 3' ends of the maize 17S rRNA were identified by comparing with yeast, Xenopus, and rat 18S rRNA sequences. BASE COUNT 447 a 419 c 504 g 439 u 6063 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GCAAGU ---------- -------AUG AACUAAUUCG 121 AA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUACGUGCUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAA CAA------- ---------- ---------- 361 --A-CCCC-- -----GACU- ---------- ---------- ---------- -----UCC-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGGA- 541 ---GGG-GC- ---GCAU-UU -AUUA-GAUA AAAG------ --GCUGA-CG ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- --------CC 961 GAU--C-CGA U---GAUUCA --UG-AUAAC UUGACGGA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUCGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCA -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-GGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCGC---- --GUUA---G UG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACCU 2221 U-G--G-GC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---CGGG--- -CCG---GG- 2521 UGCCGC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----GUAC ------GGGC 2641 ---------- --------AG AA-CC-GA-- -C-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- CGG------C UCG------- AC-CC----- ----UUCUGC CGG-CGA-UG 2821 CG----CUC- -CU-GGC--- CUUAACUG-- -GC-C--GG- -GU------C GU--GCC-UC 2881 C--GG----G --CCGUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-AU------ ---------- ---------- ---------- ---CGCUC-- -UGGAUAC-A 3001 U-UAGCA-UG G-GAUAAC-A UCAU-AGGA- U--U-CCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CAGCGG -----U---- -GU-U----- ---------- --ACUAAUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----CC --C-GCUG-- ---GCCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-CAAGG AUU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GUC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AU----GCG- -----GA-G- 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -----CCAUC C-----CUC- 5521 --CGU----A -GUU-A-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GG-C C-G-C-GAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-C-C 5761 AA-CG-AG-U AUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GG 5881 CC--GACA-- GG-CC----- --GGU--AAU --CU-UGGGA -AA-UU-UC- AUGC-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UC-AA-C-GA GGA-AUGCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --GCU-C-GG CCGCA----- ---CCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCCC- ----C----- 6241 ---------- -----CGACC -GU--C-C-G CCGA---GAA G---UCCA-U UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Clyc.flrd2 7872 bp RNA RNA 02-JUL-1998 DEFINITION Calycanthus floridus (Carolina allspice; strawberry shrub). REFERENCE 1 AUTHORS Nickrent,D.L. TITLE JOURNAL Unpublished (1995) COMMENT Corresponding GenBank entry: U38318|g1049329 common_name= Carolina allspice; strawberry shrub BASE COUNT 431 a 399 c 485 g 442 u 6115 others ORIGIN 1 .......... ....GGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUG AACGAAUUCA 121 GA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUAUCUUCUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAC CAA------- ---------- ---------- 361 --A-CCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GCAU-UU -AUUA-GAUA AAAG------ --GUCGA--- ---------- 601 ---------- ---------- ---------- ---------- -----CGGGC UAU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCCG---- 901 ---------- ---------- ---------- ---------- ---------- ---------U 961 CGC--UCUGA U---GAUUCA --UG-AUAAC UCGACGGA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UCUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCA -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACU A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --UUC----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACCU 2221 U-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGG--- --CUG---G- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UCUG ------GGUG 2641 ---------- --------UG CA-CC-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GU-------C UCG------- UC-CC----- ----UACUGC CGG-CGA-UU 2821 CG----CUC- -CU-GGC--- CUUAACUG-- -GC-C--GG- -GU------- CG--ACC-UC 2881 C--GG---CG --CCGUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGCAUAC-A 3001 U-UAGCA-UG G-GAUAAC-A UCAC-AGGA- U--U-CUGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUC--U GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAACA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-U----- ---------- --GCUUUUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AU----GUG- -----GA-GC 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CGA C----CCUC- 5521 --CAC----- -GGCCA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GG-C C-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U CUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GG 5881 CC--GACA-- GG-CC---CG --GGU--AAU --CU-U-UGG -AAAUU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UCG-C-GG CGACG--UG- --GGCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCCG- ----G----- 6241 ---------- -------CGA -CG--U-C-G C-GA---GAA G---UCCA-C UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGA... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .. // LOCUS Arab.thali 7872 bp RNA RNA 02-JUL-1998 DEFINITION Arabidopsis thaliana str. Co10 (thale cress; mouse-ear cress). REFERENCE 1 AUTHORS Unfried,I., Stocker,U. and Gruendler,P. TITLE Nucleotide sequence of the 18s rRNA gene from Arabidopsis thaliana Co10 JOURNAL Nucleic Acids Res. 17, 7513-7513 (1989) COMMENT Corresponding GenBank entry: X16077|g16506 clone_lib= EMBL3 Sau3AI partial digest tissue_type= leaves dev_stage= 6-8 week old plants clone= ATR3 legacy_attribute= bases 1-163 of overlap bases 5125-5287 of . common_name= thale cress; mouse-ear cress isolate_name= Co10 BASE COUNT 453 a 392 c 495 g 464 u 6068 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUG AACGAAUUCA 121 GA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUAACUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAA CAA------- ---------- ---------- 361 --A-CCCC-- -----GACU- ---------- ---------- ---------- -----UAU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AC- ---GCAU-UU -AUUA-GAUA AAAG------ --GUCGA-C- ---------- 601 ---------- ---------- ---------- ---------- ----GCGGGC UCUG------ 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCUUGC--- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -----UCUGA U---GAUUCA --UG-AUAAC UCGACGGA-- -------UC- G----CA--- 1021 -UG----GC- ---------C UCUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-CGCA -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-GG- 1201 UAA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --UUUC---G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----AACCU 2221 U-G--G-GA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --UGGGU--- --CGG----- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC-----UUU ------GGUG 2641 ---------- --------UG CA-UU-GG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- CG-------G CUUG------ UC-CC----- ----UUCGGU CGG-CGA-UA 2821 CG----CUC- -CU-GGU--- CUUAAUUG-- -GC-C--GG- -GU------C GU--GCC-UC 2881 C--GG---CG --CUGUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGGAUAC-A 3001 U-UAGCA-UG G-GAUAAC-A UCAU-AGGA- U--U-UCGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGG-CUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAACA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CAGCGG A----U---- -GU-U----- ---------- --GCUUAUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCUG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AC----GUG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------CAU C----CCUU- 5521 --CAC--GGC --C--G-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GUUUA-GG-C C-A-AGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U UCAC------ ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------ACC -----UU-G- 5881 CC--GACA-- GG-CC---CG --GGU--AAU --CU-U-UGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G A-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UCG-C-GG CGACG--UG- --GGUGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CC-GCCC- ----G----- 6241 ---------- -------CGA -CG--U-C-G C-GA---GAA G---UCCA-C UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Glyc.maxW 7872 bp RNA RNA 02-JUL-1998 DEFINITION Glycine max str. var. Wayne (soybean). REFERENCE 1 AUTHORS Eckenrode,V.K., Arnold,J. and Meagher,R.B. TITLE Comparison of the nucleotide sequence of soybean l8S rRNA with the sequences of other small-subunit rRNAs JOURNAL J. Mol. Evol. 21, 259-269 (1985) COMMENT Corresponding GenBank entry: X02623|g18729 common_name= soybean isolate_name= var. Wayne BASE COUNT 451 a 398 c 489 g 469 u 6065 others ORIGIN 1 .........U ACUUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUG AACUAAUUCA 121 GA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUAUCUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAA CAA------- ---------- ---------- 361 --A-CCCC-- -----GACU- ---------- ---------- ---------- -----UCU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GGG-AU- ---GCAU-UU -AUUA-GAUA AAAG------ --GUCAA-CA ---------- 601 ---------- ---------- ---------- ---------- -----CAGGC UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCCUG---- 901 ---------- ---------- ---------- ---------- ---------- --------UU 961 GCU--U-UGA U---GAUUCA --UG-AUAAC UCGUCGGA-- -------UC- G----CA--- 1021 -CG----GC- ---------C UUUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCCGG- -C-GA-CGCA -UCA-UUC-A AAUUU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --AUU----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG AUGG-AUCCA UUGAAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACCU 2221 U-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGG--- --UCG---A- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC-----UCC ------GGUG 2641 ---------- --------UG CA-CC-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GG-------C UC-------- GU-CC----- ---CUUCUGC CGG-CGA-UG 2821 CG----CUC- -CU-GUC--- CUUAACUG-- -GC-C--GG- -GU------C GU--GCC-UC 2881 C--GG---UG --CUGUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGUAUAC-A 3001 U-UAGCA-UG G-GAUAAC-A CCAC-AGGA- U--U-CUGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUG--U GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAACA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CAGCGG A----U---- -GU-U----- ---------- --GCUUUUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCUG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- U--AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG -UU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-CU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-CAA-C-G AGACC-UC-A G-CCU-GCUA A-AUA-G-CU AU----GUG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UAA C----CCUC- 5521 --CAC----- -GGCCA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUUA-GG-C C-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U CUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GG 5881 CC--GACA-- GG-UC---CG --GGU--AAU --CU-U-UGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UUG-C-GG CGACG--UG- --AGCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CU-GCCC- ----G----- 6241 ---------- -------CGA -CG--U-U-G U-GA---GAA G---UCCA-C UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Frga.anana 7872 bp RNA RNA 02-JUL-1998 DEFINITION Fragaria ananassa str. genotype 8343-6 (strawberry). REFERENCE 1 AUTHORS Simovic,N., Wolyn,D. and Jelenkovic,G. TITLE JOURNAL Unpublished (1992) COMMENT Corresponding GenBank entry: X15590|g18448 clone= lambda clone_lib= lambda legacy_attribute= FR1/ legacy_attribute= source: rho FR1-11/rho FR1-5304. common_name= strawberry isolate_name= genotype 8343-6 BASE COUNT 451 a 398 c 491 g 464 u 6068 others ORIGIN 1 .........U ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUG AACUAAUUCA 121 GA-------- ----CUGUGA A--------- ---------- ---------- ---------A 181 C-U-----GC GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUAUCUACUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAA CAA------- ---------- ---------- 361 --A-UCCC-- -----GACU- ---------- ---------- ---------- -----UCUG- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----AGAA- 541 ---GGG-AU- ---GCAU-UU -AUUA-GAUA AAAG------ --GUCAA-C- ---------- 601 ---------- ---------- ---------- ---------- ----GCGGGC UCU------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -GCUCGC--- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --A--U-UGA U---GAUUCA --UG-AUAAC UCGACGGA-- -------UC- G----CA--- 1021 -CA----GC- ---------C UUUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GCUGG- -C-GA-CGCA -UCA-UUC-A AAUAU-CUGC 1141 --CCU-AUC- AA-CUUUCG- -AUGGUA-GG -AUAG-UGG- CCU----ACC A-UGGU-GG- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 1801 -C-GGGGA-G GUA-GUGAC- AAU------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUC---- --UUU----G AG-U-C---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------ACG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 GUAU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GACCU 2221 U-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---UGGG--- --UCG---A- 2521 CCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------CG- CC----UUAU ------GGUG 2641 ---------- --------UG CA-CC-GG-- -U-------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------C- GG-------C UCG------- UC-CC----- ----UUCUAC CGG-CGA-UA 2821 CG----CUC- -CU-GGC--- CUUAACUG-- -GC-C--GG- -GU------C GU--GCC-UC 2881 C--GG---UG --CUGUUACU UUG-AAGAAA U-UAGAGU-G CUC-A-AA-G -C-AAGC--- 2941 C-UA------ ---------- ---------- ---------- ---CGCUC-- -UGGAUAC-A 3001 U-UAGCA-UG G-GAUAAC-A UCAU-AGGA- U--U-UCGG- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUC--U GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAACA-GGGA C-AGUC---- ---------G 3421 GGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CGGCGG A----U---- -GU-U----- ---------- --ACUUUUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GCCG-- ----GCA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCG--C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--CUGAGA GC--UCUUU- CUUGAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AU----CGG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- --------UC U----CCUC- 5521 ----G----- -GGCCA-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-GG-CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- GCUUA--G-C G-A-ACCAAG -UUUGAGGC- AAUAACAGG- UCUG-UC-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U CUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC --------UU 5881 G-GCCGACCA -C-GG----- --GGU--AAU --CU-U-UGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UC-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GCG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGUUGUU -CGGA----- --UCG-C-GG CGACGGGGG- --GCCGG--- ---------- 6181 ---------- ---------- ---------- ----UUCG-- --CU-GCCC- ---------- 6241 ---------- ------GCGA -CG--U-C-G C-GA---GAA G--UUCCA-C UGAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ // LOCUS Actb.verti 7872 bp RNA RNA 02-JUL-1998 DEFINITION Arceuthobium verticilliflorum str. SAG 463.3 (mistletoe). REFERENCE 1 AUTHORS Nickrent,D.L. and Starr,E.M. TITLE High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants JOURNAL J. Mol. Evol. 39, 62-70 (1994) COMMENT Corresponding GenBank entry: L24042|g509387 common_name= mistletoe isolate_name= SAG 463.3 BASE COUNT 458 a 337 c 481 g 518 u 6078 others ORIGIN 1 .......... .........G A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUC-A 61 AA-GAUUAA- -GCCAUGC-A UGU-GUAAGU ---------- -------AUG AACUAAUUAA 121 GA-------- ----UGGUGA U--------- ---------- ---------- ---------A 181 C-U-----GU GAA-UGGC-U -C-AUUA-AA -UCAG-UUAU -AG-UUUGU- -UUGA-UG-- 241 GUUUUUUCUA ---------- ---------- --------CU -C-GG-AUAA C-C-GUAG-- 301 UA-AUU-CUA GAGCUAA-U- --ACGUGCAA UAA------- ---------- ---------- 361 --A-UCUU-- -----GACU- ---------- ---------- ---------- -----UUU-- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- -----GGAA- 541 ---GAG-GA- ---GCAU-UU -AUUA-GAUA AGAG------ --GUCAA-U- ---------- 601 ---------- ---------- ---------- ---------- -----GCAAG CUUUG----- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- -CUUGU---- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 UGC--ACUGA U---GAUUCA --UG-AUAA- UAGACGGA-- -------UC- G----CA--- 1021 -UG----GC- ---------C CCUGU----- ---------- ---------- ---------- 1081 ---------- ---------- ----GUCGG- -C-GA-UGCA -UCA-UUC-A AGUUU-CUGC 1141 --CCU-AUN- AA-CUUUCG- -AUGGUA-AG -AUAU-UGG- CCU----ACU A-UGGU-GU- 1201 UGA-CGGG-U -GACGGAGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCU- ---AAUGC-- 1801 ---GGGGA-G GUA-GUGAC- AAA------- ----AAAUAA -CAAU----- -AC-CG---- 1861 -GGCUU---- --UAAC---G AG-U-U---- -U--GG-UAA -UUG------ ---------- 1921 ---------- ---------- ---------- ---------- -------GAA UGAGU----- 1981 ------A-CA AUCU-AAAUC CCUUA----- -------AUG A-GG-AUCCA UUGGAG-GG- 2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 2101 G-AU-AUU-- UAAGUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 2161 ---------- ---------- ---------- ---------- ---------- -----GAUUU 2221 U-G--G-GU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- --UGGGU--- -UUGA----- 2521 UCGGUC---- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- -------UA- CC----UUUG ------GGUG 2641 ---------- --------UG UA-CC-GG-- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --------U- U--------A CCUC------ GU-CC----- ---CUCCUAC CCA-UGA-UG 2821 CG----CUU- -CU-GGC--- CUUAAUUG-- -GU-C--GG- -GU------C GU--GCC-UU 2881 G--GG---UG --CUGUUACU UUG-AAGAAA U-UAGUGU-G CUC-A-AA-G -C-AAGU--- 2941 U-UG------ ---------- ---------- ---------- ---UGCUC-- -UGGAUAC-A 3001 U-UAGCA-UG G-GAUAAC-G UCAU-AGGA- U--U-UUGA- -U-------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- --------CC UA--UUU--G GUUGGCCUU- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 -------CGG GAUC---GGA G-UAA-UGAU UAAUA-GGGA C-AGUC---- ---------G 3421 UGGGCA-UU- CG--UA-U-U UCAU-A-G-U C-A-GAG-GU GAAA-UUC-U UGGAUUUA-U 3481 GA-A-AG-AC GAAC-AACUG C-GAAA--GC A---UUUG-U C-AAG----- ---GAUGUUU 3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUGGGG-GCU -CGAA-GACG --AUCA-G-A 3601 UAC-C-GU-- CCUAGUCUC- A--AC-CA-U -AAACGAU-G -CCGACC-A- GGG------- 3661 -----AU--- ----CAGCGG A----U---- -GU-U----- ---------- --ACUUUUAG 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- -GAC----UC --C-GUUG-- ----GUA--- --------CC U-UAU----- 3901 ---------- GAGAAA-UC- A----AAG-U UUU-UGGG-U -UCC-GGGGG -GAG-UAUGG 3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 4021 CC-A-GGAGU ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 4501 -ACUCAA-CA -CGG-G---G AAACUUA-CC -AGGUC---- ---------- ---------- 4561 ---------- ---------- ---------- -CA-G-AC-A UA-G-UAAGG AUU-G-ACA- 4621 GA--UUGAGA GC--UCUUU- CGUUAUU-C- UAUG-GG-UG ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GCG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 5161 AC-GAA-C-G AGACC-UC-A G-CCU-GCUA A-CUA-G-CU AU----GUG- -----GA-GG 5221 ---------- ---------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- -------UAC A----CCUU- 5521 --CAU--GGG --U--A-G-- ------CU-U C-UU-AGAGG -GA---CUA- U-G--CC--- 5581 ---------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- AACUA-GG-C C-A-CGGAAG -UUUGAGGC- AAUAACAGG- UCUG-UG-AU 5701 GCCC-UU--- -AG-AUG-UU C-UGGG-CCG -CACGCGCGC UA-CACU-GA -UGUAU-U-C 5761 AA-CG-AG-U UUAUA----- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- -------GCC -----UU-GA 5881 CU--AUUA-- GG-UC---UG --GGU--AAU --CU-U-UGA -AA-UU-UC- AU-C-G-UG- 5941 AUG-GGGAU- AGA---UC-A U-UGCAAUU- G-UUGGUCU- UU-AA-C-GA GGA-AUUCC- 6001 U-AGUA-A-G C-GUG-AG-U CAUCAG--CU C-GCGU-U-G -ACUACGU-C CC-UGCCCUU 6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UU--GAAU-G G-UC-C-GG- 6121 UGAAGU-GUU -CGGA----- --UUA-U-GG CGACG--UN- --NNNGC--- ---------- 6181 ---------- ---------- ---------- ----UUUG-- --CU-GUCG- ----G----- 6241 ---------- -------CGA -UG--U-U-G U-GA---GAA G---UUCA-U UAAA-CCU-U 6301 A-U-CA-UUU AG-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ---------- ---------- ---------- ---------- 6601 ---------- ---------- ---------- ---------- ---------- ---------- 6661 ---------- ---------- ---------- ---------- ---------- ---------- 6721 ---------- ---------- ---------- ---------- ---------- ---------- 6781 ---------- ---------- ---------- ---------- ---------- ---------- 6841 ---------- ---------- ---------- ---------- ---------- ---------- 6901 ---------- ---------- ---------- ---------- ---------- ---------- 6961 ---------- ---------- ---------- ---------- ---------- ---------- 7021 ---------- ---------- ---------- ---------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---------- ---------- 7141 ---------- ---------- ---------- ---------- ---------- ---------- 7201 ---------- ---------- ---------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------- ---------- ---------- ---------- ---------- 7561 ---------- ---------- ---------- ---------- ---------- ---------- 7621 ---------- ---------- ---------- ---------- ---------- ---------- 7681 ---------- ---------- ---------- ---------- ---------- ---------- 7741 ---------- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --------GG -UGAA-CCU- GCGGAAG-GA UCAUUG~~~~ 7861 ~~~~~~~~~~ ~~ //