Energetic Considerations
Outline
1)Open vs Closed reaction centers a)Quantum Yield b)charge separation I)D1,D2,P680, Tyr-Yz Phe a, and PQA 2)Models of proton gradients and PS-II energy flux a)energy efficiencies 3)Stoichiometry of Chlorophyll and O2 evolution a)antenna chlorophyll 4)Tandem mechanisms for energy capture a)Push-Pull mechanism and characteristics I)inhibitors II)cyt reduction/oxidation 5)Dissection of Z-scheme components a)thermodynamic considerations b)misleading
Energy is the capacity to do work and overcome resistance.
Molecules tend to seek the least organized, least energetic state or
highest enthalpy, H.
Equilibrium in a biological system is death - i.e. organisms require a
regular input of energy. Energy in biological systems is supplied by
certain forms of chemical energy (see review)
such as highly reduced molecules or high-energy structures. Chemical
energy has traditionally been measured in calories, abbreviated
cal, but the SI unit, the joule, is now recommended.
Gibbs free energy, G, (named for J. Willard Gibbs, one of the
founders of thermodynamics) = H - TS where T is the temperature (°K)
and S is the entropy.
Standard free energy is designated DG°
DG° = -RTlnKeq
with a strongly -DG° at equilibrium there
will be a higher molar concentration of C + D than A + B.
For the following reaction series the change in free energy is given for
each step

R = the gas constant 1.987 cal/mol.
DG°´ = the change in standard free
energy where the pH is maintained at 7.
T = temperature in degrees Kelvin, 273.15 + °C


The reaction can be coupled to an exergonic reaction

Kinase has two substrates glucose and ATP and binds to both. The Gibbs Free Energy for the overall reaction is DG° = -4 (+3.3 - 7.3). Therefore this reaction would tend to go toward G-6-P and ADP.
Another example:

DG° = 7.7 - 7.6 - 8.0 = -7.9
| All materials © 1998, 1999, 2000, Dr. David Hildebrand or Dr. Bob Houtz, unless otherwise noted. | |||||||
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